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Alexandre P. Francisco
Alexandre Paulo Francisco
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- affiliation: Technical University of Lisbon, Portugal
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Journal Articles
- 2024
- [j35]António Pedro Branco, Cátia Vaz
, Alexandre P. Francisco:
Computing RF Tree Distance over Succinct Representations. Algorithms 17(1): 15 (2024) - [j34]João Almeida
A multi-objective mixed integer linear programming model for thesis defence scheduling. Eur. J. Oper. Res. 312(1): 92-116 (2024) - [j33]Bruno Lourenço, Cátia Vaz
phyloDB: A framework for large-scale phylogenetic analysis of sequence based typing data. SoftwareX 26: 101668 (2024) - 2023
- [j32]Joaquim Espada, Alexandre P. Francisco
On Finding Optimal (Dynamic) Arborescences. Algorithms 16(12): 559 (2023) - 2022
- [j31]Miguel E. Coimbra
A practical succinct dynamic graph representation. Inf. Comput. 285(Part): 104862 (2022) - [j30]Luís M. S. Russo
Order-preserving pattern matching indeterminate strings. Inf. Comput. 289(Part): 104924 (2022) - [j29]Miguel E. Coimbra
VeilGraph: incremental graph stream processing. J. Big Data 9(1): 23 (2022) - [j28]Alexandre P. Francisco
Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 193 (2022) - [j27]Alexandre P. Francisco
Correction to: Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 228 (2022) - [j26]João Nuno Ferreira Alves
Cache-oblivious Hilbert Curve-based Blocking Scheme for Matrix Transposition. ACM Trans. Math. Softw. 48(4): 37:1-37:28 (2022) - 2021
- [j25]Cátia Vaz
Distance-based phylogenetic inference from typing data: a unifying view. Briefings Bioinform. 22(3) (2021) - [j24]Andreia Sofia Teixeira
Eliciting Fairness in N-Player Network Games through Degree-Based Role Assignment. Complex. 2021: 6851477:1-6851477:11 (2021) - [j23]Luís M. S. Russo, Alexandre P. Francisco
Small Longest Tandem Scattered Subsequences. Sci. Ann. Comput. Sci. 31(1): 79-110 (2021) - [j22]Miguel E. Coimbra
An analysis of the graph processing landscape. J. Big Data 8(1): 55 (2021) - 2020
- [j21]Luís M. S. Russo
Sparsifying parity-check matrices. Appl. Soft Comput. 96: 106601 (2020) - 2018
- [j20]Luís M. S. Russo, Andreia Sofia Teixeira
Linking and Cutting Spanning Trees. Algorithms 11(4): 53 (2018) - [j19]João A. Carriço, Maxime Crochemore, Alexandre P. Francisco
Fast phylogenetic inference from typing data. Algorithms Mol. Biol. 13(1): 4:1-4:14 (2018) - [j18]Andreia Sofia Teixeira
SpliceTAPyR - An Efficient Method for Transcriptome Alignment. Int. J. Found. Comput. Sci. 29(8): 1297-1310 (2018) - [j17]Andreia Sofia Teixeira
Large-Scale Simulations of Bacterial Populations Over Complex Networks. J. Comput. Biol. 25(8): 850-861 (2018) - [j16]Miguel Monteiro
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 1953-1959 (2018) - 2017
- [j15]Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinform. 33(1): 128-129 (2017) - 2016
- [j14]Luís M. S. Russo, Alexandre P. Francisco
Extending quick hypervolume. J. Heuristics 22(3): 245-271 (2016) - [j13]Bruno Ribeiro-Gonçalves
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Res. 44(Webserver-Issue): W246-W251 (2016) - [j12]Pedro Rijo, Alexandre P. Francisco, Mário J. Silva:
Evaluating the impact of k-anonymization on the inference of interaction networks. Trans. Data Priv. 9(1): 49-72 (2016) - 2015
- [j11]Naércio Magaia
Betweenness centrality in Delay Tolerant Networks: A survey. Ad Hoc Networks 33: 284-305 (2015) - 2014
- [j10]Cátia Vaz
TypOn: the microbial typing ontology. J. Biomed. Semant. 5: 43 (2014) - [j9]Miguel Cacho Teixeira
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42(Database-Issue): 161-166 (2014) - [j8]Luís M. S. Russo, Alexandre P. Francisco
Quick Hypervolume. IEEE Trans. Evol. Comput. 18(4): 481-502 (2014) - 2012
- [j7]Susana Vinga
Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis. Algorithms Mol. Biol. 7: 10 (2012) - [j6]Alexandre P. Francisco
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinform. 13: 87 (2012) - [j5]Alexandre P. Francisco
Mining query log graphs towards a query folksonomy. Concurr. Comput. Pract. Exp. 24(17): 2179-2192 (2012) - 2011
- [j4]Joana P. Gonçalves
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. Bioinform. 27(22): 3149-3157 (2011) - [j3]Dário Abdulrehman, Pedro T. Monteiro
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res. 39(Database-Issue): 136-140 (2011) - 2009
- [j2]Alexandre P. Francisco
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinform. 10 (2009) - 2008
- [j1]Pedro T. Monteiro
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36(Database-Issue): 132-136 (2008)
Conference and Workshop Papers
- 2023
- [c25]João Nuno Ferreira Alves
A Novel Triangular Space-Filling Curve for Cache-Oblivious In-Place Transposition of Square Matrices. IPDPS 2023: 368-378 - 2021
- [c24]Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos:
Eliciting Fairness in Multiplayer Bargaining through Network-Based Role Assignment. AAMAS 2021: 1683-1685 - 2020
- [c23]Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco
Approximating Optimal Bidirectional Macro Schemes. DCC 2020: 153-162 - [c22]Miguel E. Coimbra
On Dynamic Succinct Graph Representations. DCC 2020: 213-222 - 2018
- [c21]Pedro C. Souto, Andreia Sofia Teixeira, Alexandre P. Francisco
Capturing Financial Volatility Through Simple Network Measures. COMPLEX NETWORKS (2) 2018: 534-546 - [c20]Rui Henriques
Order-Preserving Pattern Matching Indeterminate Strings. CPM 2018: 2:1-2:15 - [c19]Alexandre P. Francisco
Exploiting Computation-Friendly Graph Compression Methods for Adjacency-Matrix Multiplication. DCC 2018: 307-314 - [c18]Miguel E. Coimbra
Gelly-scheduling: distributed graph processing for service placement in community networks. SAC 2018: 151-160 - 2017
- [c17]Bruno Dantas, Calmenelias Fleitas, Alexandre Almeida, João Forja, Alexandre P. Francisco
NGSPipes: Fostering Reproducibility and Scalability in Biosciences. BCB 2017: 603 - [c16]Alexandre P. Francisco
Dynamic Phylogenetic Inference for Sequence-based Typing Data. BCB 2017: 604 - [c15]Andreia Sofia Teixeira
Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks. ICA3PP 2017: 591-600 - [c14]Maxime Crochemore, Alexandre P. Francisco
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time. WABI 2017: 9:1-9:14 - 2016
- [c13]Andreia Sofia Teixeira
Spanning Edge Betweenness in Practice. CompleNet 2016: 3-10 - [c12]Hugo Lopes
Influence and Sentiment Homophily on Twitter Social Circles. CompleNet 2016: 349-361 - 2015
- [c11]A. C. Leitão, Alexandre Paulo Francisco
Techniques for Brain Functional Connectivity Analysis from High Resolution Imaging. CompleNet 2015: 131-138 - 2014
- [c10]Diogo Anjos, Paulo Carreira
Real-Time Integration of Building Energy Data. BigData Congress 2014: 250-257 - [c9]Mário J. Silva, Pedro Rijo, Alexandre P. Francisco
Evaluating the Impact of Anonymization on Large Interaction Network Datasets. PSBD@CIKM 2014: 3-10 - 2011
- [c8]Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco
Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network. PACBB 2011: 49-56 - 2010
- [c7]Alexandre P. Francisco
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops 2010: 19-26 - [c6]Alexandre P. Francisco
Fully Generalized Graph Cores. CompleNet 2010: 22-34 - [c5]Alexandre P. Francisco
On Community Detection in Very Large Networks. CompleNet 2010: 208-216 - [c4]João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino
An Ontology and a REST API for Sequence Based Microbial Typing Data. JBI 2010: 21-28 - [c3]Alexandre P. Francisco
Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy. SPIRE 2010: 237-242 - 2008
- [c2]Alexandre P. Francisco
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA 2008: 220-231 - [c1]Alexandre P. Francisco
Clique Analysis of Query Log Graphs. SPIRE 2008: 188-199
Informal and Other Publications
- 2024
- [i22]Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz
A modular and scalable web platform for computational phylogenetics. CoRR abs/2405.16346 (2024) - [i21]João Nuno Ferreira Alves, Samir Moustafa, Siegfried Benkner, Alexandre P. Francisco, Wilfried N. Gansterer, Luís M. S. Russo:
Accelerating Graph Neural Networks with a Novel Matrix Compression Format. CoRR abs/2409.02208 (2024) - 2023
- [i20]Bruno Lourenço, Cátia Vaz
phyloDB: A framework for large-scale phylogenetic analysis. CoRR abs/2310.12658 (2023) - [i19]Joaquim Espada, Alexandre P. Francisco
On Finding Optimal (Dynamic) Arborescences. CoRR abs/2311.03262 (2023) - [i18]António Pedro Branco, Cátia Vaz
Phylogenetic tree distance computation over succinct representations. CoRR abs/2312.14029 (2023) - 2021
- [i17]Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos:
Evolution of collective fairness in complex networks through degree-based role assignment. CoRR abs/2102.13597 (2021) - 2020
- [i16]Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco:
Approximating Optimal Bidirectional Macro Schemes. CoRR abs/2003.02336 (2020) - [i15]Luís M. S. Russo, Alexandre P. Francisco, Tatiana Rocher:
Incremental Multiple Longest Common Sub-Sequences. CoRR abs/2005.02725 (2020) - [i14]Luís M. S. Russo, Tobias Dietz, José Rui Figueira, Alexandre P. Francisco, Stefan Ruzika:
Sparsifying Parity-Check Matrices. CoRR abs/2005.05051 (2020) - [i13]Diogo M. Costa, Alexandre P. Francisco, Luís M. S. Russo:
Hardness of Modern Games. CoRR abs/2005.10506 (2020) - [i12]Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco:
Distance-based phylogenetic inference from typing data: a unifying view. CoRR abs/2006.07016 (2020) - [i11]Luís M. S. Russo, Alexandre P. Francisco:
Small Longest Tandem Scattered Subsequences. CoRR abs/2006.14029 (2020) - 2019
- [i10]Diogo M. Costa, Luís M. S. Russo, Rui Henriques, Hideo Bannai, Alexandre P. Francisco:
Order-Preserving Pattern Matching Indeterminate Strings. CoRR abs/1905.02589 (2019) - [i9]Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro:
On dynamic succinct graph representations. CoRR abs/1911.03195 (2019) - [i8]Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga:
Distributed graphs: in search of fast, low-latency, resource-efficient, semantics-rich Big-Data processing. CoRR abs/1911.11624 (2019) - 2018
- [i7]Luís M. S. Russo, Andreia Sofia Teixeira, Alexandre P. Francisco:
Linking and Cutting Spanning Trees. CoRR abs/1801.06846 (2018) - [i6]Miguel E. Coimbra, Renato Rosa, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga:
GraphBolt: Streaming Graph Approximations on Big Data. CoRR abs/1810.02781 (2018) - 2017
- [i5]Bruno Dantas, Calmenelias Fleitas, Alexandre P. Francisco, José Simão, Cátia Vaz
Beyond NGS data sharing and towards open science. CoRR abs/1701.03507 (2017) - [i4]Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga:
Gelly-Scheduling: Distributed Graph Processing for Network Service Placement. CoRR abs/1703.10446 (2017) - [i3]Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga:
Study on Resource Efficiency of Distributed Graph Processing. CoRR abs/1703.10628 (2017) - [i2]Alexandre P. Francisco
Exploiting Computation-Friendly Graph Compression Methods. CoRR abs/1708.07271 (2017) - 2012
- [i1]Luís M. S. Russo, Alexandre P. Francisco:
Quick HyperVolume. CoRR abs/1207.4598 (2012)
Coauthor Index
João A. Carriço
aka: João André Carriço
aka: João André Carriço
Arlindo L. Oliveira
aka: Arlindo Limede Oliveira
aka: Arlindo Limede Oliveira
Luís M. S. Russo
aka: Luís Manuel Silveira Russo
aka: Luís Manuel Silveira Russo
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