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Timo Lassmann
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2020 – today
- 2023
- [j15]Timo Lassmann
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SAMStat 2: quality control for next generation sequencing data. Bioinform. 39(1) (2023) - 2020
- [j14]Timo Lassmann
Kalign 3: multiple sequence alignment of large datasets. Bioinform. 36(6): 1928-1929 (2020)
2010 – 2019
- 2018
- [j13]J. Kenneth Baillie
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. PLoS Comput. Biol. 14(3) (2018) - 2016
- [j12]Hans Ienasescu, Kang Li, Robin Andersson
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. Database J. Biol. Databases Curation 2016 (2016) - [j11]David J. Arenillas, Alistair R. R. Forrest
CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs. Bioinform. 32(18): 2858-2860 (2016) - 2015
- [j10]Timo Lassmann
TagDust2: a generic method to extract reads from sequencing data. BMC Bioinform. 16: 24:1-24:8 (2015) - [j9]Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j8]Timo Lassmann
MOIRAI: A Compact Workflow System for CAGE Analysis. BMC Bioinform. 15: 144 (2014) - [j7]The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva
A promoter-level mammalian expression atlas. Nat. 507(7493): 462-470 (2014) - 2011
- [j6]Timo Lassmann
SAMStat: monitoring biases in next generation sequencing data. Bioinform. 27(1): 130-131 (2011)
2000 – 2009
- 2009
- [j5]Timo Lassmann
TagDust - a program to eliminate artifacts from next generation sequencing data. Bioinform. 25(21): 2839-2840 (2009) - 2007
- [j4]Timo Lassmann
Automatic extraction of reliable regions from multiple sequence alignments. BMC Bioinform. 8(S-5) (2007) - 2006
- [j3]Robert D. Finn
Pfam: clans, web tools and services. Nucleic Acids Res. 34(Database-Issue): 247-251 (2006) - [j2]Timo Lassmann
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. Nucleic Acids Res. 34(Web-Server-Issue): 596-599 (2006) - 2005
- [j1]Timo Lassmann
Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinform. 6: 298 (2005)
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