default search action
John Scotter Morris
Person information
- affiliation: University of California, San Francisco, USA
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
- [j22]John H. Morris, Karthik Soman
, Rabia E. Akbas
The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. Bioinform. 39(2) (2023) - [j21]Maija Utriainen, John H. Morris:
clusterMaker2: a major update to clusterMaker, a multi-algorithm clustering app for Cytoscape. BMC Bioinform. 24(1): 134 (2023) - [j20]Dexter Pratt, Rudolf T. Pillich, John H. Morris:
Translating desktop success to the web in the cytoscape project. Frontiers Bioinform. 3 (2023) - [i9]Karthik Soman
Biomedical knowledge graph-enhanced prompt generation for large language models. CoRR abs/2311.17330 (2023) - 2022
- [j19]Sergio E. Baranzini
A Biomedical Open Knowledge Network Harnesses the Power of AI to Understand Deep Human Biology. AI Mag. 43(1): 46-58 (2022) - 2021
- [j18]Eliot Ragueneau
IntAct App: a Cytoscape application for molecular interaction network visualization and analysis. Bioinform. 37(20): 3684-3685 (2021) - 2020
- [i8]Marc Legeay
Visualize omics data on networks with Omics Visualizer, a Cytoscape App. F1000Research 9: 157 (2020)
2010 – 2019
- 2019
- [j17]Damian Szklarczyk, Annika L. Gable
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47(Database-Issue): D607-D613 (2019) - [j16]G. Elisabeta Marai
Ten simple rules to create biological network figures for communication. PLoS Comput. Biol. 15(9) (2019) - 2018
- [i7]Barry Demchak
The Cytoscape Automation app article collection. F1000Research 7: 800 (2018) - [i6]Brett Settle
Copycat Layout: Network layout alignment via Cytoscape Automation. F1000Research 7: 822 (2018) - [i5]Brett Settle
aMatReader: Importing adjacency matrices via Cytoscape Automation. F1000Research 7: 823 (2018) - 2017
- [j15]Gemma L. Holliday
Biocuration in the structure-function linkage database: the anatomy of a superfamily. Database J. Biol. Databases Curation 2017: bax006 (2017) - [j14]Gemma L. Holliday
Biocuration in the structure-function linkage database: the anatomy of a superfamily. Database J. Biol. Databases Curation 2017: bax045 (2017) - [j13]Damian Szklarczyk, John H. Morris
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res. 45(Database-Issue): D362-D368 (2017) - [j12]Angela F. Harper
An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j11]Janelle B. Leuthaeuser, John H. Morris
DASP3: identification of protein sequences belonging to functionally relevant groups. BMC Bioinform. 17: 458:1-458:13 (2016) - 2015
- [j10]John H. Morris
cddApp: a Cytoscape app for accessing the NCBI conserved domain database. Bioinform. 31(1): 134-136 (2015) - [i4]John H. Morris
CyAnimator: Simple Animations of Cytoscape Networks. F1000Research 4: 482 (2015) - 2014
- [j9]Eyal Akiva, Shoshana D. Brown, Daniel E. Almonacid
The Structure-Function Linkage Database. Nucleic Acids Res. 42(Database-Issue): 521-530 (2014) - [j8]Conrad C. Huang, Elaine C. Meng, John H. Morris
Enhancing UCSF Chimera through web services. Nucleic Acids Res. 42(Webserver-Issue): 478-484 (2014) - [i3]Alexander R. Pico
The Cytoscape app article collection. F1000Research 3: 138 (2014) - [i2]John H. Morris
enhancedGraphics: a Cytoscape app for enhanced node graphics. F1000Research 3: 147 (2014) - [i1]John H. Morris
setsApp: Set operations for Cytoscape Nodes and Edges. F1000Research 3: 149 (2014) - 2012
- [j7]Stefanie Jäger
Global landscape of HIV-human protein complexes. Nat. 481(7381): 365-370 (2012) - 2011
- [j6]Leonard Apeltsin, John H. Morris
Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution. Bioinform. 27(3): 326-333 (2011) - [j5]John H. Morris
clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinform. 12: 436 (2011) - 2010
- [j4]Gang Su, Allan Kuchinsky, John H. Morris
GLay: community structure analysis of biological networks. Bioinform. 26(24): 3135-3137 (2010) - [j3]Andrés F. Flórez
Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection. BMC Bioinform. 11: 484 (2010)
2000 – 2009
- 2007
- [j2]John H. Morris
structureViz: linking Cytoscape and UCSF Chimera. Bioinform. 23(17): 2345-2347 (2007) - 2006
- [j1]Alex S. Nord
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. Nucleic Acids Res. 34(Database-Issue): 642-648 (2006) - 2005
- [c1]Thomas E. Ferrin, Conrad C. Huang, Daniel M. Greenblatt, Doug Stryke, Kathleen M. Giacomini, John H. Morris:
Enhancing Data Sharing in Collaborative Research Projects with DASH. Pacific Symposium on Biocomputing 2005
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:20 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: