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PEARC 2020: Portland, OR, USA
- Gwen A. Jacobs, Craig A. Stewart:
PEARC '20: Practice and Experience in Advanced Research Computing, Portland, OR, USA, July 27-31, 2020. ACM 2020, ISBN 978-1-4503-6689-2
Advanced Research Computing Environments
- Kathy Benninger, Greg Hood, Derek Simmel, Luke Tuite, Arthur W. Wetzel, Alexander Ropelewski, Simon C. Watkins, Alan M. Watson, Marcel Bruchez:
Cyberinfrastructure of a Multi-Petabyte Microscopy Resource for Neuroscience Research. 1-7 - Steven R. Brandt, Alex Bigelow, Sayef Azad Sakin, Katy Williams, Katherine E. Isaacs
, Kevin A. Huck
JetLag: An Interactive, Asynchronous Array Computing Environment. 8-12 - Andrew E. Bruno, Salvatore J. Guercio, Doris Sajdak
Grendel: Bare Metal Provisioning System for High Performance Computing. 13-18 - Gabriele Carcassi, Joe Breen, Lincoln Bryant, Robert W. Gardner, Shawn McKee
SLATE: Monitoring Distributed Kubernetes Clusters. 19-25 - Alan Chalker
Cloud and on-premises data center usage, expenditures, and approaches to return on investment: A survey of academic research computing organizations. 26-33 - Jason Alt, Rachana Ananthakrishnan, Kyle Chard
OAuth SSH with Globus Auth. 34-40 - Volodymyr V. Kindratenko, Dawei Mu, Yan Zhan, John Maloney, Sayed Hadi Hashemi, Benjamin Rabe, Ke Xu, Roy H. Campbell, Jian Peng, William Gropp
HAL: Computer System for Scalable Deep Learning. 41-48 - B. J. Lougee, Michael Robinson, Chris Stackpole, Mark Watson, Greg Woodward:
Bear: Cyberinfrastructure for Long-Tail Researchers at the Federal Reserve Bank of Kansas City. 49-55 - George Papadimitriou
Workflow Submit Nodes as a Service on Leadership Class Systems. 56-63 - Srijith Rajamohan, Robert E. Settlage:
Informing the On/Off-prem Cloud Discussion in Higher Education. 64-71 - Pierre Rioux, Gregory Kiar, Alexandre Hutton, Alan C. Evans, Shawn T. Brown
Deploying large fixed file datasets with SquashFS and Singularity. 72-76 - Patrick Schmitz
A Research Computing and Data Capabilities Model for Strategic Decision-Making. 77-84 - Igor Sfiligoi, David Schultz
Demonstrating a Pre-Exascale, Cost-Effective Multi-Cloud Environment for Scientific Computing: Producing a fp32 ExaFLOP hour worth of IceCube simulation data in a single workday. 85-90 - Joe Stubbs
Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing Ecosystems. 91-98 - Rachana Ananthakrishnan, Kyle Chard
An Open Ecosystem for Pervasive Use of Persistent Identifiers. 99-105 - Dan Stanzione
Frontera: The Evolution of Leadership Computing at the National Science Foundation. 106-111 - Joseph P. White
Monitoring and Analysis of Power Consumption on HPC Clusters using XDMoD. 112-119
Application Software, Support, and Outcomes
- Cédric Arisdakessian, Sean B. Cleveland
MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data. 120-124 - D. Balamurugan, Kristina Plazonic, Kevin Abbey, Seema Husain, Neeraja Syed:
Building an Interactive Workbench Environment for Single Cell Genomics Applications. 125-131 - Manush Bhatt, Rajesh Kalyanam
Design and Deployment of Photo2Building: A Cloud-based Procedural Modeling Tool as a Service. 132-138 - Rajendra Bose, Alexander Antoniades, John Pellman:
Research Computing Infrastructure and Researcher Engagement: Notes from Neuroscience. 139-143 - Andrew Burks, Luc Renambot, Andrew E. Johnson
VisSnippets: A Web-Based System for Impromptu Collaborative Data Exploration on Large Displays. 144-151 - Timothy Burley, Lorissa Humble, Charles Sleeper, Abigail Sticha, Angela Chesler, Patrick Regan, Ernesto Verdeja, Paul R. Brenner
NLP Workflows for Computational Social Science: Understanding Triggers of State-Led Mass Killings. 152-159 - Marcus Christie, Suresh Marru, Eroma Abeysinghe, Dimuthu Upeksha, Sudhakar Pamidighantam
An extensible Django-based web portal for Apache Airavata. 160-167 - Laura Christopherson
Toward a Data Lifecycle Model for NSF Large Facilities. 168-175 - Patrick Clemins
Implementing a Loosely-Coupled Integrated Assessment Model in the Pegasus Workflow Management System. 176-180 - Sean B. Cleveland
Tapis API Development with Python: Best Practices In Scientific REST API Implementation: Experience implementing a distributed Stream API. 181-187 - Sean B. Cleveland
Scientific Data Annotation and Dissemination: Using the 'Ike Wai Gateway to Manage Research Data. 188-197 - Christiaan P. Gribble, Victor Eijkhout, Paul A. Navrátil
Implementing a Prototype System for 3D Reconstruction of Compressible Flow. 198-206 - Rajesh Kalyanam
GeoEDF: An Extensible Geospatial Data Framework for FAIR Science. 207-214 - Pouya Kousha
Accelerated Real-time Network Monitoring and Profiling at Scale using OSU INAM. 215-223 - Nathaniel Kremer-Herman, Douglas Thain
Log Discovery for Troubleshooting Open Distributed Systems with TLQ. 224-231 - Matthew Li, Nicolas Chan, Viraat Chandra, Krishna Muriki:
Cluster Usage Policy Enforcement Using Slurm Plugins and an HTTP API. 232-238 - Jared H. McLean
The Hawai'i Rainfall Analysis and Mapping Application (HI-RAMA): Decision Support and Data Visualization for Statewide Rainfall Data. 239-245 - Susan Mehringer
Using Containers to Create More Interactive Online Training and Education Materials. 246-251 - Jennifer R. Dierauer, Chen Zhu
FutureWater Indiana: A science gateway for spatio-temporal modeling of water in Wabash basin with a focus on climate change. 252-261 - Sudhakar Pamidighantam
A Science Gateway for Simulating the Economics of Carbon Sequestration Technologies: SimCCS2.0. 262-269 - Barry I. Schneider
Atomic and Molecular Scattering Applications in an Apache Airavata Science Gateway. 270-277 - Isuru Ranawaka, Suresh Marru, Juleen Graham, Aarushi Bisht, Jim Basney
Custos: Security Middleware for Science Gateways. 278-284 - Danying Shao, Gretta Kellogg
PEGR: a management platform for ChIP-based next generation sequencing pipelines. 285-292 - Andrew J. Solis
VisQueue: An Analytical Dashboard for Science Exploration on HPC Systems. 293-298 - Bradley D. Spitzbart, Heather J. Lynch, Matteo Turilli, Shantenu Jha
ICEBERG: Imagery Cyber-infrastructure and Extensible Building blocks to Enhance Research in the Geosciences. (A Research Programmer's Perspective). 299-303 - Ryan Theriot, James Hutchison, Nurit Kirshenbaum
Tailoring Data Visualization to Diversely Informed End Users. 304-310 - Peter Vaillancourt
Reproducible and Portable Workflows for Scientific Computing and HPC in the Cloud. 311-320 - Stephanie Zeller, Francesca Samsel
Environmental Visualization: Moving Beyond the Rainbows. 321-326 - Jun Zhou, Karen Y. Smith
Building Science Gateways for Humanities. 327-332
Machine Learning/AI
- Rocco Febbo, Brendan Flood, Julian Halloy
Autonomous Vehicle Control Using a Deep Neural Network and Jetson Nano. 333-338 - Alberto González Martínez, Billy Troy Wooton, Nurit Kirshenbaum
Exploring Collections of research publications with Human Steerable AI. 339-348 - Christopher Pondoc
A Pilot Benchmarking Study of Deep Neural Network Performance on Low Magnification Pathology Region-of-Interest Images. 349-357 - Paul Rodríguez, Alan B. Craig, Alison Langmead, Christopher J. Nygren
Extracting and Analyzing Deep Learning Features for Discriminating Historical Art: Deep Learning Features and Art. 358-363 - Zachary S. Tschirhart, Karl W. Schulz:
Evaluation of Clustering Techniques for GPS Phenotyping Using Mobile Sensor Data. 364-371 - Philip Yao, Andrew So, Tingting Chen, Hao Ji:
On Multiview Robustness of 3D Adversarial Attacks. 372-378
Workforce development, diversity, and professionalization
- Astri Briliyanti, Julie Wilson Rojewski, Katy Luchini-Colbry, Dirk Colbry
CyberAmbassadors: Results from Pilot Testing a New Professional Skills Curriculum. 379-385 - Leslie Froeschl, Scott Wells, Marques Bland:
Best Practices in Project Management in a Large, Distributed Organization: Lessons Learned from XSEDE. 386-392 - Sharon Broude Geva, Dana Brunson
Fostering Collaboration Among Organizations in the Research Computing and Data Ecosystem. 393-401 - John Goodhue, Julie Ma, Adrian Del Maestro, Sia Najafi, Bruce Segee, Scott Valcourt, Ralph Zottola
Northeast Cyberteam: Workforce Development for Research Computing at Small and Mid-sized Institutions. 402-406 - Kate L. Hertweck
From novice to expert: Supporting all levels of computational expertise in reproducible research methods. 407-413 - Daniel Lapine
NCSA Internship Program for Cyberinfrastructure Professionals. 414-420 - Henry Neeman, David Akin, Hussein M. Al-Azzawi, Kevin L. Brandt, Jamene Brooks Kieffer
Cyberinfrastructure Facilitation Skills Training via the Virtual Residency Program. 421-428 - Robert S. Sinkovits, Osvaldo D. Soto:
Introducing Computing and Technology through Problem-Solving in Discrete Mathematics. 429-435 - Lan Zhao, Carol X. Song
Building a Gateway Infrastructure for Interactive Cyber Training and Workforce Development. 436-443
Poster Short Papers
- Rebecca Belshe, Peter Schlichting, Gil Speyer:
Refactoring a statistical package for demanding memory loads: Adapting R for high performance telemetry data analytics. 444-447 - Caughlin Bohn
Legion: A K-12 HPC Outreach and Education Cluster. 448-451 - Nicholas Boyd, Jacob Hawkins, Thomas Yang, Scott A. Valcourt:
Augmented Reality: Telehealth Demonstration Application. 452-455 - Carrie Brown
Great Plains CyberTeam: A Regional Mentor Approach to Cyberinfrastructure Workforce Development and Advancement. 456-460 - In Kwon Choi, Eroma Abeysinghe, Eric Coulter, Suresh Marru, Marlon E. Pierce
TopPIC Gateway: A Web Gateway for Top-Down Mass Spectrometry Data Interpretation. 461-464 - You Alex Gao, Jim Basney
SciTokens SSH: Token-based Authentication for Remote Login to Scientific Computing Environments. 465-468 - Bowei Kang
Online Single-cell RNA-seq Data Denoising with Transfer Learning. 469-472 - Brian Leonard, Minyue Fan, Joel S. Welling:
Optimizing a Specialized Convolutional Neural Network in a Supercomputing Environment Using Tensorflow and VisIt. 473-476 - Lee Liming
Use Case Methodology in XSEDE System Integration. 477-480 - Marla Meehl, Wendy Huntoon, Maria Kalyvaki
Preparing Women for Leadership in IT-What WINS Is Doing. 481-483 - Viswanath Nandigam, Kai Lin, Manu Shantharam, Scott Sakai, Subhashini Sivagnanam:
Research Workflows - Towards reproducible science via detailed provenance tracking in Open Science Chain. 484-486 - John-Paul Navarro
Secure XSEDE Information APIs. 487-490 - Paul Parsons
SGCI Incubator and its Role in Workforce Development: Lessons Learned from Training, Consultancy, and Building a Community of Community-Builders for Science Gateways. 491-494 - Igor Sfiligoi:
Demonstrating 100 Gbps in and out of the public Clouds. 495-499 - Igor Sfiligoi, Daniel McDonald, Rob Knight
Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude. 500-504 - Subhashini Sivagnanam, Wyatt Gorman, Donald Doherty
Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform. 505-509 - Subhashini Sivagnanam, Kenneth Yoshimoto, Ted Carnevale, Dave Nadeau, Martin Kandes, Trevor Petersen, Dung Truong, Ramón Martínez-Cancino, Arnaud Delorme, Scott Makeig, Amit Majumdar:
Neuroscience Gateway Enabling Large Scale Modeling and Data Processing in Neuroscience Research. 510-513 - Vanessa V. Sochat:
AskCI Server: Collaborative knowledge base. 514-517 - Ana Luisa Veroneze Solórzano, Lucas Leandro Nesi, Lucas Mello Schnorr:
Using Visualization of Performance Data to Investigate Load Imbalance of a Geophysics Parallel Application. 518-521 - Joe Stubbs, Suresh Marru, Daniel Mejia
Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications. 522-525 - Sajid Ali
Benchmark informed software upgrades on Quest, Northwestern's HPC cluster. 526-529 - Ravi Tripathi, William Stonewall Monroe, Mike Hanby, John-Paul Robinson:
Building a Scalable Infrastructure: To grow computational research and enhance collaboration across the research enterprise. 530-533 - Emily Z. Wang, Yi-Gui Wang:
Computational Study in a PUI using XSEDE Resources and ECSS Support. 534-537 - Jason Yalim
Toward Dynamically Controlling Slurm's Classic Fairshare Algorithm. 538-542
Visualization Short Papers
- David Bock, Francina Dominguez
Beating of the Amazon: Visualizing the Diurnal Cycle of the Amazonian Hydroclimatology. 543-544 - Francis Ray Cristobal, Michael Dodge, Briana Noll, Nickolas Rosenberg, John H. R. Burns, Joseph Sanchez, Drew Gotshalk, Kailey H. Pascoe, Alexandra Runyan
Exploration of Coral Reefs in Hawai'i through Virtual Reality: Hawaiian Coral Reef Museum VR. 545-546 - Eliot Feibush
Visualization Techniques for Data on 3D Grids: Raleigh-Taylor Simulation Example. 547-548 - Cale Guillermo, Billy Troy Wooton, Dylan Kobayashi:
LandSAGE: A decision support tool for monitoring and mitigation of natural disasters. 549-550 - Brian Leonard, Minyue Fan, Joel Welling:
Using VisIt to Evaluate the Accuracy of a Convolutional Neural Network. 551-552 - Jared H. McLean
A VR Environment for Demonstrating the Impact of Sea Level Rise on Hawai'i. 553-554 - Ngan V. T. Nguyen
RadarViewer : Visualizing the dynamics of multivariate data. 555-556
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