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20. EuroMPI 2013: Madrid, Spain
- Jack J. Dongarra, Javier García Blas, Jesús Carretero:
20th European MPI Users's Group Meeting, EuroMPI '13, Madrid, Spain - September 15 - 18, 2013. ACM 2013, ISBN 978-1-4503-1903-4
European MPI Users' Group Meeting (EuroMPI 2013): programming models and new implementation techniques
- Justin M. Wozniak, Tom Peterka, Timothy G. Armstrong, James Dinan, Ewing L. Lusk, Michael Wilde, Ian T. Foster:
Dataflow coordination of data-parallel tasks via MPI 3.0. 1-6 - Alejandro Calderón
, Jesús Carretero
Improving MPI applications with a new MPI_Info and the use of the memoization. 7-12 - James Dinan, Pavan Balaji, David Goodell, Douglas Miller, Marc Snir, Rajeev Thakur
Enabling MPI interoperability through flexible communication endpoints. 13-18 - Timo Schneider, Fredrik Kjolstad
MPI datatype processing using runtime compilation. 19-24 - Daniel J. Holmes, Stephen Booth:
McMPI: a managed-code MPI library in pure C#. 25-30
European MPI Users' Group Meeting (EuroMPI 2013): I/O and memory management
- Vishwanath Venkatesan, Rakhi Anand, Jaspal Subhlok, Edgar Gabriel:
Optimized process placement for collective I/O operations. 31-36 - Saba Sehrish, Seung Woo Son, Wei-keng Liao
Improving collective I/O performance by pipelining request aggregation and file access. 37-42 - Judicael A. Zounmevo, Dries Kimpe, Robert B. Ross, Ahmad Afsahi:
Using MPI in high-performance computing services. 43-48 - Christi Symeonidou, Polyvios Pratikakis, Angelos Bilas
DRASync: distributed region-based memory allocation and synchronization. 49-54
European MPI Users' Group Meeting (EuroMPI 2013): benchmarking and performance analysis
- Amin Hassani, Anthony Skjellum, Ron Brightwell, Brian W. Barrett:
Design, implementation, and performance evaluation of MPI 3.0 on portals 4.0. 55-60 - Antonio J. Peña
Analysis of topology-dependent MPI performance on Gemini networks. 61-66 - Brian W. Barrett, Simon D. Hammond, Ron Brightwell, K. Scott Hemmert:
The impact of hybrid-core processors on MPI message rate. 67-71 - Marc-André Hermanns
Understanding the formation of wait states in applications with one-sided communication. 73-78
European MPI Users' Group Meeting (EuroMPI 2013): networking and communication protocols
- Masayuki Hatanaka, Atsushi Hori, Yutaka Ishikawa:
Optimization of MPI persistent communication. 79-84 - Masamichi Takagi, Yuichi Nakamura, Atsushi Hori, Balazs Gerofi, Yutaka Ishikawa:
Revisiting rendezvous protocols in the context of RDMA-capable host channel adapters and many-core processors. 85-90 - Mingzhe Li, Sreeram Potluri, Khaled Hamidouche, Jithin Jose, Dhabaleswar K. Panda:
Efficient and truly passive MPI-3 RMA using InfiniBand atomics. 91-96
European MPI Users' Group Meeting (EuroMPI 2013): algorithms and optimizations
- Sameer Kumar, Daniel Faraj:
Optimization of MPI_Allreduce on the blue Gene/Q supercomputer. 97-103 - Michael Hofmann, Gudula Rünger:
In-place algorithms for the symmetric all-to-all exchange with MPI. 105-110 - Mohammed el Mehdi Diouri, Olivier Glück, Jean-Christophe Mignot, Laurent Lefèvre:
Energy estimation for MPI broadcasting algorithms in large scale HPC systems. 111-116
European MPI Users' Group Meeting (EuroMPI 2013): traces analysis and validation
- Emmanuelle Saillard, Patrick Carribault, Denis Barthou
Combining static and dynamic validation of MPI collective communications. 117-122 - Michael Wagner
Runtime message uniquification for accurate communication analysis on incomplete MPI event traces. 123-128 - Tobias Hilbrich, Bronis R. de Supinski, Fabian Hänsel, Matthias S. Müller
Runtime MPI collective checking with tree-based overlay networks. 129-134
European MPI Users' Group Meeting (EuroMPI 2013): poster session
- Daiki Fukudome, Toshiya Takami
Parallel bucket-brigade communication interface for scientific applications. 135-136 - Hubert Ritzdorf:
First observations using nonblocking collectives in MVAPICH. 137-138 - Francisco Rodrigo Duro, Javier García Blas
A hierarchical parallel storage system based on distributed memory for large scale systems. 139-140 - Oscar Vega-Gisbert, José E. Román
Towards the availability of Java bindings in open MPI. 141-142 - Juan-Antonio Rico-Gallego, Juan Carlos Díaz Martín:
On the performance of concurrent transfers in collective algorithms. 143-144 - Antonio Pimenta, Eduardo César
Methodology for MPI applications autotuning. 145-146 - Takenori Shimosaka, Hitoshi Murai, Mitsuhisa Sato:
A communication library between multiple sets of MPI processes for a MPMD model. 147-148 - Shinji Sumimoto, Takayuki Okamoto, Hideyuki Akimoto, Tomoya Adachi, Yuichiro Ajima, Kenichi Miura:
Dynamic memory usage analysis of MPI libraries using DMATP-MPI. 149-150
Special session on improving MPI user and developer interaction (IMUDI)
- Jason Graham, Edward Givelberg, Kalin Kanov:
Run-time creation of the turbulent channel flow database by an HPC simulation using MPI-DB. 151-156 - Pablo Mosquera Michaelsen, Balázs Pritz, Martin Gabi:
A fluid-structure-interaction tool by coupling of existing codes. 157-162 - Joshua Hursey, Jeffrey M. Squyres:
Advancing application process affinity experimentation: open MPI's LAMA-based affinity interface. 163-168
International Workshop on Parallelism in Bioinformatics (PBio): hardware accelerators in bioinformatics
- Fabian Nowak, Michael Bromberger, Martin Schindewolf, Wolfgang Karl:
Multi-parallel prefiltering on the convey HC-1 for supporting homology detection. 169-174 - Carlos García, Francisco D. Igual, Guillermo Botella, Manuel Prieto, Francisco Tirado:
Non-negative matrix factorization on low-power architectures: a comparative study. 175-178 - Sérgio Dias
Triangulating molecular surfaces on multiple GPUs. 181-186 - Pedro Valero-Lara
A GPU approach for accelerating 3D deformable registration (DARTEL) on brain biomedical images. 187-192
International Workshop on Parallelism in Bioinformatics (PBio): MPI implementations in bioinformatics
- Sergio Santander-Jiménez
Parallelizing a multiobjective swarm intelligence approach to phylogenetics using hybrid MPI/OpenMP schemes. 193-198 - Marco Ferretti, Mirto Musci:
Entire motifs search of secondary structures in proteins: a parallelization study. 199-204 - Gonzalo Martín, David E. Singh, Maria-Cristina V. Marinescu
Parallel algorithm for simulating the spatial transmission of influenza in EpiGraph. 205-210 - Matteo Comin
Efficient parallel construction of suffix trees for genomes larger than main memory. 211-216 - Francisco Javier García Blas
Parallel implementation of a X-ray tomography reconstruction algorithm based on MPI and CUDA. 217-222
International Workshop on Parallelism in Bioinformatics (PBio): multicore computing in bioinformatics
- David L. González-Álvarez, Miguel A. Vega-Rodríguez
Parallelizing a hybrid multiobjective differential evolution for identifying cis-regulatory elements. 223-228 - Elmar Peise, Diego Fabregat-Traver
Algorithms for large-scale whole genome association analysis. 229-234 - Héctor Martínez
A dynamic pipeline for RNA sequencing on multicore processors. 235-240 - Miguel E. Coimbra
Parallel efficient aligner of pyrosequencing reads. 241-246 - Ivan Teixido
P-Biblio-MetReS, a parallel data mining tool for the reconstruction of molecular networks. 247-252
International Workshop on Parallelism in Bioinformatics (PBio): parallel tools and applications in bioinformatics
- Romain Vasseur, Stéphanie Baud
Parallel strategies for an inverse docking method. 253-258 - Miquel Orobitg
Scalability and accuracy improvements of consistency-based multiple sequence alignment tools. 259-264 - Ahmad Salah
A data decomposition middleware tool with a generic built-in work-flow. 265-269 - Aprígio Bezerra, Porfidio Hernández
Job scheduling for optimizing data locality in Hadoop clusters. 271-276 - François Moreews
Seamless coarse grained parallelism integration in intensive bioinformatics workflows. 277-282
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