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2nd BIBE 2001: Bethesda, Maryland, USA
- Nikolaos G. Bourbakis:
2nd IEEE International Symposium on Bioinformatics and Bioengineering, Bethesda, Maryland, USA, November 4-5, 2001, Proceedings. IEEE Computer Society 2003, ISBN 0-7695-1423-5
Session BI 1: Interoperability of Biological Databases
- Prasenjit Mitra, Gio Wiederhold:
An Algebra for Semantic Interoperability of Information Sources. 174-182 - Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller:
An XML Application For Genomic Data Interoperation. 97-103 - Liangyou Chen, Hasan M. Jamil
:
Supporting Remote User Defined Functions in Heterogeneous Biological Databases. 144-152 - Barbara A. Eckman, Zoé Lacroix, Louiqa Raschid:
Optimized Seamless Integration of Biomolecular Data. 23-32
Session BI 2: Phylogenetic Trees & Biological Information Sources
- John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten
Comparing Trees in a Phylogenetic Relationship Repository. 166-173 - Hasan M. Jamil
Querying Phylogenies Visually. 3-10 - Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data. 15-22 - Raymond K. Wong, William M. Shui:
Utilizing Multiple Bioinformatics Information Sources: An XML Database Approach. 73-80
Session BI 3: Proteins & Structure Prediction
- Martin T. Swain, Anthony J. Brooks, Graham J. L. Kemp:
An Automated Approach to Modeling Class II MHC Alleles and Predicting Peptide Binding. 81-88 - Samuel Ieong, Ming-Yang Kao, Tak Wah Lam
Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. 183-190 - Joan Hérisson, Rachid Gherbi:
Model-Based Prediction of the 3D Trajectory of Huge DNA Sequences Interactive Visualization and Exploration. BIBE 2001: 263-270 - Phillip W. Lord, Jacqueline Renée Reich, Alex L. Mitchell, Robert D. Stevens, Terri K. Attwood
PRECIS: An Automated Pipeline for Producing Concise Reports About Proteins. 57-64
Session BI 4: Gene Expression and Gene Regulation
- Chun Tang, Li Zhang, Aidong Zhang, Murali Ramanathan:
Interrelated Two-way Clustering: An Unsupervised Approach for Gene Expression Data Analysis. 41-48 - Victor M. Markowitz, Thodoros Topaloglou:
Applying Data Warehousing Concepts to Gene Expression Data Management. 65-72 - Michihiro Kuramochi, George Karypis
Gene Classification using Expression Profiles: A Feasibility Study. 191-200 - Arvind K. Bansal:
Integrating Co-Regulated Gene Groups and Pair-Wise Genome Comparisons to Automate Reconstruction of Microbial Pathways. 209-216
Session BE 1: Brain Bio-Imaging
- Michale E. Brandt:
Thinking Nonlinearly About Brain Dynamics: A neurocomentary. 112-118 - Sagar Saladi, Pujita Pinnamaneni, Joerg Meyer:
Texture-Based 3-D Brain Imaging. 136-143 - Lijin Ding, A. Ardeshir Goshtasby:
Registration of Multi-Modal Brain Images Using the Rigidity Constraint. 217-222 - Lisa M. Bates, Richard A. Robb:
Investigation of Ultrasound Image Based Correction of Intraoperative Brain Shift. 254-261
Session BI 5: Biological Data Mining and Knowledge Discovery
- Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova
Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration. 153-160 - Michael L. Raymer, Leslie A. Kuhn, William F. Punch III:
Knowledge Discovery in Biological Databasets Using a Hybrid Bayes Classifier/Evolutionary Algorithm. 236-245 - Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao:
Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. 104-111 - Michael J. Wise, A. Mark Osborn:
TRUFFLER: Programs to Study Microbial Community Composition and Flux from Fluorescent DNA Fingerprinting Data. 129-135
Session BE 2: Bio-Imaging
- Francis K. H. Quek, Robert K. Bryll, Mary P. Harper, Lei Chen, Lorraine O. Ramig:
Audio and Vision-Based Evaluation of Parkinson's Disease from Discourse Video. 246-253 - Nikolaos V. Tsekos
Development of a Robotic Device for MRI-Guided Interventions in the Breast. 201-208 - Jason R. Gilder, Michael L. Raymer, Travis E. Doom:
PocketMol: A Molecular Visualization Tool for the PocketPC (short paper). 11-14 - Nikolaos G. Bourbakis, Despina Kavraki:
An Intelligent Assistant for Navigation of Visually Impaired People (short paper). 230-235
Session BI 6: Sequence Search and Alignment
- Aaron Davidson:
A Fast Pruning Algorithm for Optimal Sequence Alignment. 49-56 - Hadon Nash, Douglas Blair, John J. Grefenstette:
Comparing Algorithms for Large-Scale Sequence Analysis. 89-96 - Crispin J. Miller
PSST... The Probabilisitic Sequence Search Tool. 33-40 - Robert F. Murphy, Meel Velliste, Jie Yao, Gregory Porreca:
Searching Online Journals for Fluorescence Microscope Images Depicting Protein Subcellular Location Patterns. 119-128
Session BE 3: Bioengineering
- Mostafa Fatemi, James F. Greenleaf:
Medical Applications of Radiation Micro-Force (Invited Presentation). 262 - Ricardo Gutierrez-Osuna, Nilesh U. Powar, P. Sun:
Chemosensory Adaptation in an Electronic Nose. 223-229 - José Quintero, Antonio Aguilera, Maryvonne Abraham, Hyxia Villegas, Guillermo Montilla, Basel Solaiman:
Medical Decision-Making and Collaborative Reasoning. 161-165 - Deacon J. Sweeney, Gerald M. Alter, Michael L. Raymer, Travis E. Doom:
Profile Combinatorics for Fragment Selection in Comparative Protein Structure Modeling. 271-278
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