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Judith Klein-Seetharaman
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- affiliation: University of Warwick, Warwick Medical School, UK
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2020 – today
- 2023
- [c18]Abdullah Mamun
, Chia-Cheng Kuo, David W. Britt, Lawrence D. Devoe, Mark I. Evans, Hassan Ghasemzadeh, Judith Klein-Seetharaman:
Neonatal Risk Modeling and Prediction. BSN 2023: 1-4 - 2022
- [j16]Abraham Asfaw, Alexandre Blais, Kenneth R. Brown, Jonathan Candelaria, Christopher Cantwell, Lincoln D. Carr
Building a Quantum Engineering Undergraduate Program. IEEE Trans. Educ. 65(2): 220-242 (2022) - 2021
- [c17]Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman:
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome. PSB 2021 - [c16]Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam:
Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience. PSB 2021
2010 – 2019
- 2017
- [j15]Meghana Kshirsagar, Keerthiram Murugesan, Jaime G. Carbonell, Judith Klein-Seetharaman:
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. J. Comput. Biol. 24(6): 501-514 (2017) - [j14]Narinder Sanghera, Alexander Anderson
Insulin biosensor development: a case study. Int. J. Parallel Emergent Distributed Syst. 32(1): 119-138 (2017) - 2016
- [c15]Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan:
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. RECOMB 2016: 53-64 - 2015
- [c14]Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman:
Refining Literature Curated Protein Interactions Using Expert Opinions. Pacific Symposium on Biocomputing 2015: 318-329 - 2013
- [j13]Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman:
Multitask learning for host-pathogen protein interactions. Bioinform. 29(13): 217-226 (2013) - 2012
- [j12]Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman:
Techniques to cope with missing data in host-pathogen protein interaction prediction. Bioinform. 28(18): 466-472 (2012) - [j11]Javier García-García
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. Nucleic Acids Res. 40(Web-Server-Issue): 147-151 (2012) - [j10]Nevenka Dimitrova, Judith Klein-Seetharaman, Peter Beyerlein, Ahmed H. Tewfik:
Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors]. IEEE Signal Process. Mag. 29(1): 19-21 (2012) - [c13]Ilia Nouretdinov, Alex Gammerman, Yanjun Qi, Judith Klein-Seetharaman:
Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal Method. Pacific Symposium on Biocomputing 2012: 311-322 - 2011
- [j9]Zhongming Zhao, Junfeng Xia
Virus interactions with human signal transduction pathways. Int. J. Comput. Biol. Drug Des. 4(1): 83-105 (2011) - 2010
- [j8]Yanjun Qi, Öznur Tastan
Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. Bioinform. 26(18) (2010) - [c12]Irtisha Singh
Comparison of virus interactions with human signal transduction pathways. BCB 2010: 17-24 - [c11]Subhodeep Moitra, Naveena Yanamala, Öznur Tastan
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. SoSE 2010: 1-7
2000 – 2009
- 2009
- [c10]Sivaraman Balakrishnan, Öznur Tastan
Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1. GENSiPS 2009: 1-4 - [c9]Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman:
Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration. Pacific Symposium on Biocomputing 2009: 516-527 - 2008
- [j7]Madhavi Ganapathiraju
Transmembrane helix prediction using amino acid property features and latent semantic analysis. BMC Bioinform. 9(S-1) (2008) - [j6]Naveena Yanamala, Kalyan C. Tirupula, Judith Klein-Seetharaman:
Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors. BMC Bioinform. 9(S-1) (2008) - [c8]Yanjun Qi, Fernanda Balem, Christos Faloutsos
Protein complex identification by supervised graph local clustering. ISMB 2008: 250-268 - 2007
- [j5]Madhavi Ganapathiraju
TMpro web server and web service: transmembrane helix prediction through amino acid property analysis. Bioinform. 23(20): 2795-2796 (2007) - [j4]Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph
A mixture of feature experts approach for protein-protein interaction prediction. BMC Bioinform. 8(S-10) (2007) - 2006
- [p1]Madhavi Ganapathiraju, Vijayalaxmi Manoharan, Raj Reddy, Judith Klein-Seetharaman:
Collaborative Discovery Through Biological Language Modeling Interface. Ambient Intelligence in Everyday 2006: 300-321 - 2005
- [j3]Yang Cai, Ingo Snel, Betty Cheng, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman:
BioSim--a biomedical character-based problem solving environment. Future Gener. Comput. Syst. 21(7): 1145-1156 (2005) - [c7]Betty Yee Man Cheng, Jaime G. Carbonell, Judith Klein-Seetharaman:
A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries. ISMIS 2005: 29-37 - [c6]Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph:
Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources. Pacific Symposium on Biocomputing 2005 - 2004
- [j2]Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan
Comparison of probabilistic combination methods for protein secondary structure prediction. Bioinform. 20(17): 3099-3107 (2004) - [j1]Madhavi K. Ganapathiraju, Judith Klein-Seetharaman, Narayanaswamy Balakrishnan, Raj Reddy:
Characterization of protein secondary structure. IEEE Signal Process. Mag. 21(3): 78-87 (2004) - [c5]Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj Reddy, Judith Klein-Seetharaman:
Computational Biology and Language. Ambient Intelligence for Scientific Discovery 2004: 25-47 - [c4]Yang Cai, Judith Klein-Seetharaman:
Ambient intelligence for scientific discovery. CHI Extended Abstracts 2004: 1705-1706 - [c3]Deborah K. Weisser, Judith Klein-Seetharaman:
Identification of fundamental building blocks in protein sequences using statistical association measures. SAC 2004: 154-161 - [c2]Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan:
Context sensitive vocabulary and its application in protein secondary structure prediction. SIGIR 2004: 538-539 - 2003
- [c1]Yang Cai, Ingo Snel, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman:
Towards Biomedical Problem Solving in a Game Environment. International Conference on Computational Science 2003: 1005-1014
Coauthor Index
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