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Geoffrey J. Barton
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2020 – today
- 2022
- [j43]Mihaly Varadi
, Stephen Anyango
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - [j42]Stuart A. MacGowan
Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants. PLoS Comput. Biol. 18(3) (2022) - 2021
- [j41]Javier S. Utgés
Ankyrin repeats in context with human population variation. PLoS Comput. Biol. 17(8) (2021) - 2020
- [j40]Mihaly Varadi
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020)
2010 – 2019
- 2019
- [j39]Kimon Froussios
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana. Bioinform. 35(18): 3372-3377 (2019) - [i2]Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton
Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq. F1000Research 8: 213 (2019) - [i1]Kira Mourão, Nicholas J. Schurch
Detection and mitigation of spurious antisense expression with RoSA. F1000Research 8: 819 (2019) - 2018
- [j38]Peter V. Troshin, James B. Procter
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure. Bioinform. 34(11): 1939-1940 (2018) - 2016
- [j37]Joseph Ward, Christian Cole
AlmostSignificant: simplifying quality control of high-throughput sequencing data. Bioinform. 32(24): 3850-3851 (2016) - 2015
- [j36]Fábio Madeira
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides. Bioinform. 31(14): 2276-2283 (2015) - [j35]Marek Gierlinski, Christian Cole
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinform. 31(22): 3625-3630 (2015) - [j34]Alexey Drozdetskiy, Christian Cole
JPred4: a protein secondary structure prediction server. Nucleic Acids Res. 43(Webserver-Issue): W389-W394 (2015) - 2011
- [j33]Peter V. Troshin, James B. Procter
Java bioinformatics analysis web services for multiple sequence alignment - JABAWS: MSA. Bioinform. 27(14): 2001-2002 (2011) - [j32]Michelle S. Scott, Peter V. Troshin, Geoffrey J. Barton
NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinform. 12: 317 (2011) - [j31]Ian M. Overton
Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus. BMC Syst. Biol. 5: 68 (2011) - 2010
- [j30]Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton:
Human protein-protein interaction prediction. BMC Bioinform. 11(S-10): P1 (2010)
2000 – 2009
- 2009
- [j29]Andrew M. Waterhouse
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinform. 25(9): 1189-1191 (2009) - [j28]David M. A. Martin
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases. Nucleic Acids Res. 37(Database-Issue): 244-250 (2009) - [j27]Mark D. McDowall
PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 37(Database-Issue): 651-656 (2009) - [j26]Michelle S. Scott, Fabio Avolio
Human miRNA Precursors with Box H/ACA snoRNA Features. PLoS Comput. Biol. 5(9) (2009) - 2008
- [j25]Ian M. Overton
ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction. Bioinform. 24(7): 901-907 (2008) - [j24]Jonathan R. Manning
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction. BMC Bioinform. 9 (2008) - [j23]Thomas P. Walsh, Caleb Webber
SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser. Nucleic Acids Res. 36(Web-Server-Issue): 25-29 (2008) - [j22]Ian M. Overton
TarO: a target optimisation system for structural biology. Nucleic Acids Res. 36(Web-Server-Issue): 190-196 (2008) - [j21]Christian Cole
The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 36(Web-Server-Issue): 197-201 (2008) - 2007
- [j20]Michelle S. Scott, Geoffrey J. Barton
Probabilistic prediction and ranking of human protein-protein interactions. BMC Bioinform. 8 (2007) - [j19]Michelle S. Scott, Geoffrey J. Barton:
Prediction and ranking of human protein-protein interactions within a Bayesian framework. BMC Syst. Biol. 1(S-1): P66 (2007) - [j18]Emily R. Jefferson, Geoffrey J. Barton:
The relationship between domain-domain interaction orientation and sequence similarity. BMC Syst. Biol. 1(S-1): S13 (2007) - [j17]Emily R. Jefferson
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. Nucleic Acids Res. 35(Database-Issue): 580-589 (2007) - 2006
- [j16]Julie Dawn Thompson, Arnaud Muller
MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. 7: 318 (2006) - [j15]G. P. S. Raghava
Quantification of the variation in percentage identity for protein sequence alignments. BMC Bioinform. 7: 415 (2006) - 2005
- [j14]Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Geoffrey J. Barton:
Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures. BMC Bioinform. 6(S-3) (2005) - 2004
- [j13]Michele E. Clamp, James A. Cuff
The Jalview Java alignment editor. Bioinform. 20(3): 426-427 (2004) - [j12]David M. A. Martin
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinform. 5: 178 (2004) - [j11]Adel Golovin, Thomas J. Oldfield, John G. Tate
E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. 32(Database-Issue): 211-216 (2004) - 2003
- [j10]David M. A. Martin
Visual Representation of Database Search Results: The RHIMS Plot. Bioinform. 19(8): 1037-1038 (2003) - [j9]Caleb Webber
Increased Coverage Obtained by Combination of Methods for Protein Sequence Database Searching. Bioinform. 19(11): 1397-1403 (2003) - [j8]G. P. S. Raghava
OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy. BMC Bioinform. 4: 47 (2003) - 2001
- [j7]Asim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton
3Dee: a database of protein structural domains. Bioinform. 17(1): 200-201 (2001) - [j6]Caleb Webber, Geoffrey J. Barton
Estimation of P-values for global alignments of protein sequences. Bioinform. 17(12): 1158-1167 (2001) - 2000
- [j5]James A. Cuff
ProtEST: protein multiple sequence alignments from expressed sequence tags. Bioinform. 16(2): 111-116 (2000)
1990 – 1999
- 1998
- [j4]James A. Cuff
JPred: a consensus secondary structure prediction server. Bioinform. 14(10): 892-893 (1998) - 1995
- [c1]Robert B. Russell
Protein fold recognition from secondary structure assignments. HICSS (5) 1995: 302-311 - 1993
- [j3]Geoffrey J. Barton:
An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps. Comput. Appl. Biosci. 9(6): 729-734 (1993) - [j2]C. D. Livingstone, Geoffrey J. Barton:
Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput. Appl. Biosci. 9(6): 745-756 (1993) - 1991
- [j1]Geoffrey J. Barton:
Scanning protein sequence databanks using a distributed processing workstation network. Comput. Appl. Biosci. 7(1): 85-88 (1991)
Coauthor Index
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