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Karel Berka
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2020 – today
- 2023
- [j22]Ondrej Schindler
, Karel Berka
αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Res. 51(W1): 11-16 (2023) - [j21]Aliaksei Chareshneu
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. Nucleic Acids Res. 51(W1): 326-330 (2023) - 2022
- [j20]Adam Midlik
OverProt: secondary structure consensus for protein families. Bioinform. 38(14): 3648-3650 (2022) - [j19]Mihaly Varadi
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j18]Ivana Hutarová Vareková, Jan Hutar, Adam Midlik
2DProts: database of family-wide protein secondary structure diagrams. Bioinform. 37(23): 4599-4601 (2021) - [j17]Ondrej Schindler
Optimized SQE atomic charges for peptides accessible via a web application. J. Cheminformatics 13(1): 45 (2021) - [j16]Ondrej Schindler
Correction to: Optimized SQE atomic charges for peptides accessible via a web application. J. Cheminformatics 13(1): 52 (2021) - [j15]Ian Sillitoe
CATH: increased structural coverage of functional space. Nucleic Acids Res. 49(Database-Issue): D266-D273 (2021) - [j14]David Sehnal
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res. 49(Webserver-Issue): 431-437 (2021) - 2020
- [j13]Mihaly Varadi
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020) - [j12]Tomás Racek
Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic Acids Res. 48(Webserver-Issue): W591-W596 (2020)
2010 – 2019
- 2019
- [j11]Jakub Juracka
MolMeDB: Molecules on Membranes Database. Database J. Biol. Databases Curation 2019: baz078 (2019) - 2018
- [j10]Lukás Pravda
ChannelsDB: database of biomacromolecular tunnels and pores. Nucleic Acids Res. 46(Database-Issue): D399-D405 (2018) - [j9]Lukás Pravda
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update). Nucleic Acids Res. 46(Webserver-Issue): W368-W373 (2018) - 2016
- [j8]Václav Bazgier, Karel Berka
Exponential repulsion improves structural predictability of molecular docking. J. Comput. Chem. 37(28): 2485-2494 (2016) - [j7]Petra Cechová
Ion Pathways in the Na+/K+-ATPase. J. Chem. Inf. Model. 56(12): 2434-2444 (2016) - [j6]Jon C. Ison
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - 2015
- [j5]Veronika Navrátilová, Markéta Paloncýová
Effect of Cholesterol on the Structure of Membrane-Attached Cytochrome P450 3A4. J. Chem. Inf. Model. 55(3): 628-635 (2015) - 2014
- [j4]Lukás Pravda
Anatomy of enzyme channels. BMC Bioinform. 15: 379 (2014) - [j3]Tjaart A. P. de Beer
PDBsum additions. Nucleic Acids Res. 42(Database-Issue): 292-296 (2014) - 2013
- [j2]David Sehnal, Radka Svobodová Vareková, Karel Berka, Lukás Pravda, Veronika Navrátilová, Pavel Banás, Crina-Maria Ionescu, Michal Otyepka, Jaroslav Koca:
MOLE 2.0: advanced approach for analysis of biomacromolecular channels. J. Cheminformatics 5: 39 (2013) - 2012
- [j1]Karel Berka
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels. Nucleic Acids Res. 40(Web-Server-Issue): 222-227 (2012)
1980 – 1989
- 1986
- [b1]Karel Berka, Lothar Kreiser:
Logik-Texte - kommentierte Auswahl zur Geschichte der modernen Logik (4. Aufl.). Akademie Verlag 1986, pp. I-XVII, 1-633
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