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Matthew Berriman
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2020 – today
- 2021
- [j24]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni
, Nomi L. Harris
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021)
2010 – 2019
- 2018
- [j23]Raymond Y. N. Lee
WormBase 2017: molting into a new stage. Nucleic Acids Res. 46(Database-Issue): D869-D874 (2018) - 2016
- [j22]Kevin L. Howe
WormBase 2016: expanding to enable helminth genomic research. Nucleic Acids Res. 44(Database-Issue): 774-780 (2016) - [j21]Sascha Steinbiss
Companion: a web server for annotation and analysis of parasite genomes. Nucleic Acids Res. 44(Webserver-Issue): W29-W34 (2016) - 2015
- [j20]Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic Acids Res. 43(Database-Issue): 637-644 (2015) - 2014
- [j19]Todd W. Harris
WormBase 2014: new views of curated biology. Nucleic Acids Res. 42(Database-Issue): 789-793 (2014) - 2013
- [j18]Tim Carver, Simon R. Harris
BamView: visualizing and interpretation of next-generation sequencing read alignments. Briefings Bioinform. 14(2): 203-212 (2013) - [j17]Adhemar Zerlotini, Eric R. G. R. Aguiar, Fudong Yu
SchistoDB: an updated genome resource for the three key schistosomes of humans. Nucleic Acids Res. 41(Database-Issue): 728-731 (2013) - 2012
- [j16]Tim Carver, Simon R. Harris
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinform. 28(4): 464-469 (2012) - [j15]Priti Parikh, Jie Zheng, Flora J. Logan-Klumpler, Christian J. Stoeckert Jr., Christos Louis, Pantelis Topalis, Anna V. Protasio
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms. J. Biomed. Semant. 3: 5 (2012) - [j14]Flora J. Logan-Klumpler, Nishadi De Silva
GeneDB - an annotation database for pathogens. Nucleic Acids Res. 40(Database-Issue): 98-108 (2012) - [j13]Karen Yook
WormBase 2012: more genomes, more data, new website. Nucleic Acids Res. 40(Database-Issue): 735-741 (2012) - 2010
- [j12]Tim Carver, Ulrike Böhme
BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinform. 26(5): 676-677 (2010) - [j11]Thomas D. Otto
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinform. 26(14): 1704-1707 (2010) - [j10]María P. Magariños, John P. Overington, Santiago J. Carmona
Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens. BMC Bioinform. 11(S-10): O10 (2010) - [j9]Martin Aslett, Cristina Aurrecoechea, Matthew Berriman, John Brestelli, Brian P. Brunk, Mark Carrington, Daniel P. Depledge, Steve Fischer, Bindu Gajria, Xin Gao, Malcolm J. Gardner, Alan R. Gingle, Gregory R. Grant
TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res. 38(Database-Issue): 457-462 (2010)
2000 – 2009
- 2009
- [j8]Tim J. Carver, Nick R. Thomson
DNAPlotter: circular and linear interactive genome visualization. Bioinform. 25(1): 119-120 (2009) - [j7]Samuel A. Assefa, Thomas M. Keane
ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinform. 25(15): 1968-1969 (2009) - 2008
- [j6]Tim J. Carver, Matthew Berriman
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinform. 24(23): 2672-2676 (2008) - [j5]Bridget Chukualim, Nick Peters, Christiane Hertz-Fowler, Matthew Berriman:
TrypanoCyc - a metabolic pathway database for Trypanosoma brucei. BMC Bioinform. 9(S-10) (2008) - 2005
- [j4]Tim J. Carver, Kim Rutherford
ACT: the Artemis comparison tool. Bioinform. 21(16): 3422-3423 (2005) - 2004
- [j3]David M. A. Martin
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinform. 5: 178 (2004) - [j2]Christiane Hertz-Fowler
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32(Database-Issue): 339-343 (2004) - 2003
- [j1]Matthew Berriman, Kim Rutherford
Viewing and Annotating Sequence Data with Artemis. Briefings Bioinform. 4(2): 124 (2003)
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