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Jeff de Pons
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- affiliation: Medical College of Wisconsin and Marquette University Milwaukee, WI, USA
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2020 – today
- 2022
- [j18]Valérie de Crécy-Lagard
, Rocio Amorin de Hegedus
A roadmap for the functional annotation of protein families: a community perspective. Database J. Biol. Databases Curation 2022(2022) (2022) - 2021
- [j17]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021) - 2020
- [j16]Julie Agapite, Laurent-Philippe Albou
Alliance of Genome Resources Portal: unified model organism research platform. Nucleic Acids Res. 48(Database-Issue): D650-D658 (2020) - [j15]Jennifer R. Smith
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. Nucleic Acids Res. 48(Database-Issue): D731-D742 (2020)
2010 – 2019
- 2019
- [j14]Shur-Jen Wang, Stanley J. F. Laulederkind, Yiqing Zhao
Integrated curation and data mining for disease and phenotype models at the Rat Genome Database. Database J. Biol. Databases Curation 2019: baz014 (2019) - 2018
- [c3]Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Elizabeth R. Bolton, Jennifer R. Smith, Marek Tutaj, Jeff de Pons, Mary Shimoyama, Melinda R. Dwinell:
Adapting Disease Vocabularies for Curation at the Rat Genome Database. ICBO 2018 - 2017
- [c2]Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier:
The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) 2017 - 2016
- [j13]G. Thomas Hayman, Stanley J. F. Laulederkind, Jennifer R. Smith, Shur-Jen Wang, Victoria Petri, Rajni Nigam, Marek Tutaj, Jeff de Pons, Melinda R. Dwinell, Mary Shimoyama:
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database. Database J. Biol. Databases Curation 2016 (2016) - [j12]Mary Shimoyama, Jennifer R. Smith, Jeff de Pons, Marek Tutaj, Pawjai Khampang, Wenzhou Hong, Christy B. Erbe, Garth D. Ehrlich
The Chinchilla Research Resource Database: resource for an otolaryngology disease model. Database J. Biol. Databases Curation 2016 (2016) - [c1]Mary Shimoyama, Stanley J. F. Laulederkind, Jeff de Pons, Marek Tutaj, Victoria Petri, G. Thomas Hayman, Shur-Jen Wang, Rajni Nigam, Jennifer R. Smith, Jyothi Thota, Omid Ghiasvand, Melinda R. Dwinell:
Disease Connections at RGD. AMIA 2016 - 2015
- [j11]Weisong Liu, Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Rajni Nigam, Jennifer R. Smith, Jeff de Pons, Melinda R. Dwinell, Mary Shimoyama:
OntoMate: a text-mining tool aiding curation at the Rat Genome Database. Database J. Biol. Databases Curation 2015 (2015) - [j10]Liping Li, Enguo Chen, Chun Yang, Jun Zhu, Pushkala Jayaraman
Improved rat genome gene prediction by integration of ESTs with RNA-Seq information. Bioinform. 31(1): 25-32 (2015) - [j9]Mary Shimoyama, Jeff de Pons, G. Thomas Hayman, Stanley J. F. Laulederkind, Weisong Liu, Rajni Nigam, Victoria Petri, Jennifer R. Smith, Marek Tutaj, Shur-Jen Wang, Elizabeth A. Worthey, Melinda R. Dwinell, Howard J. Jacob:
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. Nucleic Acids Res. 43(Database-Issue): 743-750 (2015) - 2014
- [j8]Victoria Petri, Pushkala Jayaraman
The pathway ontology - updates and applications. J. Biomed. Semant. 5: 7 (2014) - 2013
- [j7]Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Jennifer R. Smith, Timothy Lowry, Rajni Nigam, Victoria Petri, Jeff de Pons, Melinda R. Dwinell, Mary Shimoyama, Diane H. Munzenmaier, Elizabeth A. Worthey, Howard J. Jacob:
The Rat Genome Database 2013 - data, tools and users. Briefings Bioinform. 14(4): 520-526 (2013) - [j6]Stanley J. F. Laulederkind, Weisong Liu, Jennifer R. Smith, G. Thomas Hayman, Shur-Jen Wang, Rajni Nigam, Victoria Petri, Timothy Lowry, Jeff de Pons, Melinda R. Dwinell, Mary Shimoyama:
PhenoMiner: quantitative phenotype curation at the rat genome database. Database J. Biol. Databases Curation 2013 (2013) - [j5]Jennifer R. Smith, Carissa A. Park, Rajni Nigam, Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Timothy Lowry, Victoria Petri, Jeff de Pons, Marek Tutaj, Weisong Liu, Elizabeth A. Worthey, Mary Shimoyama, Melinda R. Dwinell:
The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications. J. Biomed. Semant. 4: 26 (2013) - 2012
- [j4]Stanley J. F. Laulederkind, Marek Tutaj, Mary Shimoyama, G. Thomas Hayman, Timothy Lowry, Rajni Nigam, Victoria Petri, Jennifer R. Smith, Shur-Jen Wang, Jeff de Pons, Melinda R. Dwinell, Howard J. Jacob:
Ontology searching and browsing at the Rat Genome Database. Database J. Biol. Databases Curation 2012 (2012) - 2011
- [j3]Stanley J. F. Laulederkind, Mary Shimoyama, G. Thomas Hayman, Timothy Lowry, Rajni Nigam, Victoria Petri, Jennifer R. Smith, Shur-Jen Wang, Jeff de Pons, George Kowalski, Weisong Liu, Wes Rood, Diane H. Munzenmaier, Melinda R. Dwinell, Simon N. Twigger
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data. Database J. Biol. Databases Curation 2011 (2011) - [j2]Victoria Petri, Mary Shimoyama, G. Thomas Hayman, Jennifer R. Smith, Marek Tutaj, Jeff de Pons, Melinda R. Dwinell, Diane H. Munzenmaier, Simon N. Twigger
The Rat Genome Database Pathway Portal. Database J. Biol. Databases Curation 2011 (2011)
2000 – 2009
- 2009
- [j1]Melinda R. Dwinell, Elizabeth A. Worthey, Mary Shimoyama, Burcu Bakir-Gungor
The Rat Genome Database 2009: variation, ontologies and pathways. Nucleic Acids Res. 37(Database-Issue): 744-749 (2009)
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