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Shane Canon
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- affiliation: Lawrence Berkeley National Laboratory, Data & Analytics Services Group
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2020 – today
- 2022
- [c21]Laurie Stephey
, Shane Canon
Scaling Podman on Perlmutter: Embracing a community-supported container ecosystem. CANOPIE-HPC@SC 2022: 25-35 - 2021
- [j6]Bin Hu
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale. Frontiers Bioinform. 1 (2021) - [j5]Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49(Database-Issue): D1555 (2021) - [j4]Samuel M. D. Seaver
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49(Database-Issue): D575-D588 (2021) - [c20]Katerina B. Antypas, Deborah Bard, Johannes P. Blaschke
Enabling discovery data science through cross-facility workflows. IEEE BigData 2021: 3671-3680 - [c19]William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall:
Leveraging Ontologies within the National Microbiome Data Collaborative. ICBO 2021: 141-143 - [c18]Reid Priedhorsky, Shane Richard Canon, Timothy Randles, Andrew J. Younge:
Minimizing privilege for building HPC containers. SC 2021: 32 - [i3]Reid Priedhorsky, Shane Richard Canon, Timothy Randles, Andrew J. Younge:
Minimizing privilege for building HPC containers. CoRR abs/2104.07508 (2021) - 2020
- [c17]Shane Richard Canon:
The Role of Containers in Reproducibility. CANOPIE-HPC@SC 2020: 19-25
2010 – 2019
- 2018
- [c16]Jason R. Lee, Shane Richard Canon, Tina Declerck, Brent Draney, David Paul, David Skinner
Enhancing supercomputing with software defined networking. ICOIN 2018: 571-576 - [c15]Steven Andrew Farrell, Aaron Vose, Oliver Evans, Matthew L. Henderson, Shreyas Cholia
Interactive Distributed Deep Learning with Jupyter Notebooks. ISC Workshops 2018: 678-687 - 2017
- [j3]Philip C. Roth, Shane Richard Canon:
Special Issue on Data-Intensive Scalable Computing Systems. Parallel Comput. 61: 1-2 (2017) - 2016
- [c14]Alex Gittens, Aditya Devarakonda
Matrix factorizations at scale: A comparison of scientific data analytics in spark and C+MPI using three case studies. IEEE BigData 2016: 204-213 - [c13]Nicholas Chaimov
Scaling Spark on HPC Systems. HPDC 2016: 97-110 - [i2]Alex Gittens, Aditya Devarakonda, Evan Racah, Michael F. Ringenburg, Lisa Gerhardt, Jey Kottalam, Jialin Liu, Kristyn J. Maschhoff, Shane Canon, Jatin Chhugani, Pramod Sharma, Jiyan Yang, James Demmel, Jim Harrell, Venkat Krishnamurthy, Michael W. Mahoney, Prabhat:
Matrix Factorization at Scale: a Comparison of Scientific Data Analytics in Spark and C+MPI Using Three Case Studies. CoRR abs/1607.01335 (2016) - 2014
- [c12]Nicholas J. Wright
Cori: A Pre-Exascale Supercomputer for Big Data and HPC Applications. High Performance Computing Workshop 2014: 82-100 - 2013
- [c11]You-Wei Cheah, Shane Richard Canon, Beth Plale
Milieu: Lightweight and Configurable Big Data Provenance for Science. BigData Congress 2013: 46-53 - [c10]Elif Dede, Madhusudhan Govindaraju, Daniel K. Gunter
Performance evaluation of a MongoDB and hadoop platform for scientific data analysis. ScienceCloud@HPDC 2013: 13-20 - [c9]Sudip S. Dosanjh, Shane Canon, Jack Deslippe, Kjiersten Fagnan, Richard A. Gerber
Extreme Data Science at the National Energy Research Scientific Computing (NERSC) Center. PARCO 2013: 3-18 - 2012
- [j2]Lavanya Ramakrishnan, Shane Richard Canon, Krishna Muriki, Iwona Sakrejda, Nicholas J. Wright
Evaluating Interconnect and Virtualization Performance forHigh Performance Computing. SIGMETRICS Perform. Evaluation Rev. 40(2): 55-60 (2012) - [c8]Zacharia Fadika, Madhusudhan Govindaraju, Shane Richard Canon, Lavanya Ramakrishnan:
Evaluating Hadoop for Data-Intensive Scientific Operations. IEEE CLOUD 2012: 67-74 - [c7]Elif Dede, Zacharia Fadika, Jessica Hartog, Madhusudhan Govindaraju, Lavanya Ramakrishnan, Dan Gunter
MARISSA: MApReduce Implementation for Streaming Science Applications. eScience 2012: 1-8 - 2010
- [c6]Lavanya Ramakrishnan, Keith R. Jackson, Shane Canon, Shreyas Cholia
Defining future platform requirements for e-Science clouds. SoCC 2010: 101-106 - [c5]Keith R. Jackson, Lavanya Ramakrishnan, Krishna Muriki, Shane Canon, Shreyas Cholia
Performance Analysis of High Performance Computing Applications on the Amazon Web Services Cloud. CloudCom 2010: 159-168 - [c4]Kesheng Wu
Multi-level bitmap indexes for flash memory storage. IDEAS 2010: 114-116
2000 – 2009
- 2008
- [c3]Weikuan Yu
Empirical Analysis of a Large-Scale Hierarchical Storage System. Euro-Par 2008: 130-140 - 2007
- [c2]Weikuan Yu
Exploiting Lustre File Joining for Effective Collective IO. CCGRID 2007: 267-274 - 2004
- [c1]Ian T. Foster, Jerry Gieraltowski, Scott Gose, Natalia Maltsev, Edward N. May, Alex A. Rodriguez, Dinanath Sulakhe, A. Vaniachine, Jim Shank, Saul Youssef, David Adams, Richard Baker, Wensheng Deng, Jason Smith, Dantong Yu, Iosif Legrand, Suresh Singh, Conrad Steenberg, Yang Xia, M. Anzar Afaq, Eileen Berman, James Annis, L. A. T. Bauerdick, Michael Ernst, Ian Fisk, Lisa Giacchetti, Gregory E. Graham, Anne Heavey, Joseph Kaiser, Nickolai Kuropatkin, Ruth Pordes, Vijay Sekhri, John Weigand, Yujun Wu, Keith Baker, Lawrence Sorrillo, John Huth, Matthew Allen, Leigh Grundhoefer, John Hicks, Fred Luehring, Steve Peck, Robert Quick, Stephen C. Simms, George Fekete, Jan vandenBerg, Kihyeon Cho, Kihwan Kwon, Dongchul Son, Hyoungwoo Park, Shane Canon, Keith R. Jackson, David E. Konerding, Jason Lee, Doug Olson, Iwona Sakrejda, Brian Tierney, Mark Green, Russ Miller, James Letts, Terrence Martin, David Bury, Catalin Dumitrescu, Daniel Engh, Robert W. Gardner, Marco Mambelli, Yuri Smirnov, Jens-S. Vöckler, Michael Wilde, Yong Zhao, Xin Zhao, Paul Avery, Richard Cavanaugh, Bockjoo Kim, Craig Prescott, Jorge Luis Rodriguez, Andrew Zahn, Shawn McKee, Christopher T. Jordan, James E. Prewett, Timothy L. Thomas, Horst Severini, Ben Clifford, Ewa Deelman, Larry Flon, Carl Kesselman, Gaurang Mehta, Nosa Olomu, Karan Vahi, Kaushik De, Patrick McGuigan, Mark Sosebee, Dan Bradley, Peter Couvares, Alan DeSmet, Carey Kireyev, Erik Paulson, Alain Roy, Scott Koranda, Brian Moe, Bobby Brown, Paul Sheldon:
The Grid2003 Production Grid: Principles and Practice. HPDC 2004: 236-245 - 2003
- [i1]Craig E. Tull, Shane Canon, Steve Chan, Doug Olson, Laura Pearlman, Von Welch:
Using CAS to Manage Role-Based VO Sub-Groups. CoRR cs.CR/0306088 (2003) - 2001
- [j1]Stephen Chan, Cary Whitney, Iwona Sakreja, Shane Canon:
Monitoring Tools for Larger Sites. login Usenix Mag. 26(5) (2001)
Coauthor Index
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