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2020 – today

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2024
[j7]
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  - journals/biodb/AmusatHMGBGFR24
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Oluwamayowa O. Amusat, Harshad Hegde, Christopher J. Mungall, Anna Giannakou, Neil P. Byers, Dan Gunter, Kjiersten Fagnan, Lavanya Ramakrishnan:
Automated annotation of scientific texts for ML-based keyphrase extraction and validation. Database J. Biol. Databases Curation 2024 (2024)
2023
[i6]
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  - journals/corr/abs-2311-05042
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Oluwamayowa O. Amusat, Harshad Hegde, Christopher J. Mungall, Anna Giannakou, Neil P. Byers, Dan Gunter, Kjiersten Fagnan, Lavanya Ramakrishnan:
Automated Annotation of Scientific Texts for ML-based Keyphrase Extraction and Validation. CoRR abs/2311.05042 (2023)
2021
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  - conf/icse-bokss/BeattieG21
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Keith Beattie, Dan Gunter:
Lessons learned working with protected assets in an open-source collaborative scientific software project. BoKSS@ICSE 2021: 13-14

2010 – 2019

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2018
[i5]
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E. Wes Bethel, Brian Tierney, Jason Lee, Dan Gunter, Stephen Lau:
Using High-Speed WANs and Network Data Caches to Enable Remote and Distributed Visualization. CoRR abs/1801.09504 (2018)
2017
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Lavanya Ramakrishnan, Daniel K. Gunter:
Ten Principles for Creating Usable Software for Science. eScience 2017: 210-218
[c36]
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Gilberto Zonta Pastorello, Dan Gunter, Housen Chu, Danielle Christianson, Carlo Trotta, Eleonora Canfora, Boris Faybishenko, You-Wei Cheah, Norm Beekwilder, Stephen Chan, Sigrid Dengel, Trevor Keenan, Fianna O'Brien, Abdelrahman Elbashandy, Cristina Poindexter, Marty Humphrey, Dario Papale, Deborah A. Agarwal:
Hunting Data Rogues at Scale: Data Quality Control for Observational Data in Research Infrastructures. eScience 2017: 446-447
2016
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Patrick Huck, Dan Gunter, Shreyas Cholia, Donald Winston, Alpha T. N'Diaye, Kristin A. Persson:
User applications driven by the community contribution framework MPContribs in the Materials Project. Concurr. Comput. Pract. Exp. 28(7): 1982-1993 (2016)
[i4]
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Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer, James Hetherington, Frank Löffler, Dan Gunter, Ray Idaszak, Steven R. Brandt, Mark A. Miller, Sandra Gesing, Nick D. Jones, Nic Weber, Suresh Marru, Gabrielle Allen, Birgit Penzenstadler, Colin C. Venters, Ethan Davis, Lorraine J. Hwang, Ilian T. Todorov, Abani K. Patra, Miguel de Val-Borro:
Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). CoRR abs/1602.02296 (2016)
2015
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Anubhav Jain, Shyue Ping Ong, Wei Chen, Bharat Medasani, Xiaohui Qu, Michael Kocher, Miriam Brafman, Guido Petretto, Gian-Marco Rignanese, Geoffroy Hautier, Daniel K. Gunter, Kristin A. Persson:
FireWorks: a dynamic workflow system designed for high-throughput applications. Concurr. Comput. Pract. Exp. 27(17): 5037-5059 (2015)
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Patrick Huck, Anubhav Jain, Dan Gunter, Donald Winston, Kristin A. Persson:
A Community Contribution Framework for Sharing Materials Data with Materials Project. e-Science 2015: 535-541
[i3]
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Patrick Huck, Anubhav Jain, Dan Gunter, Donald Winston, Kristin A. Persson:
A Community Contribution Framework for Sharing Materials Data with Materials Project. CoRR abs/1510.05024 (2015)
[i2]
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Patrick Huck, Dan Gunter, Shreyas Cholia, Donald Winston, Alpha T. N'Diaye, Kristin A. Persson:
User Applications Driven by the Community Contribution Framework MPContribs in the Materials Project. CoRR abs/1510.05727 (2015)
2014
[c34]
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Gilberto Zonta Pastorello, Deborah A. Agarwal, Dario Papale, Taghrid Samak, Carlo Trotta, Alessio Ribeca, Cristina Poindexter, Boris Faybishenko, Dan Gunter, Rachel Hollowgrass, Eleonora Canfora:
Observational Data Patterns for Time Series Data Quality Assessment. eScience 2014: 271-278
[c33]
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Lavanya Ramakrishnan, Sarah S. Poon, Valerie C. Hendrix, Daniel K. Gunter, Gilberto Zonta Pastorello, Deborah A. Agarwal:
Experiences with User-Centered Design for the Tigres Workflow API. eScience 2014: 290-297
2013
[j4]
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Karan Vahi, Ian Harvey, Taghrid Samak, Daniel K. Gunter, Kieran Evans, David Rogers, Ian J. Taylor, Monte Goode, Fabio Silva, Eddie Al-Shakarchi, Gaurang Mehta, Ewa Deelman, Andrew Jones:
A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific Workflows. J. Grid Comput. 11(3): 381-406 (2013)
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Ahmed El-Hassany, Ezra Kissel, Dan Gunter, D. Martin Swany:
Design and Implementation of a Unified Network Information Service. IEEE SCC 2013: 224-231
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Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang:
Automatic Outlier Detection for Genome Assembly Quality Assessment. e-Science 2013: 45-52
[c30]
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Elif Dede, Madhusudhan Govindaraju, Daniel K. Gunter, Shane Richard Canon, Lavanya Ramakrishnan:
Performance evaluation of a MongoDB and hadoop platform for scientific data analysis. ScienceCloud@HPDC 2013: 13-20
2012
[c29]
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Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gideon Juve, Fabio Silva, Karan Vahi:
Failure analysis of distributed scientific workflows executing in the cloud. CNSM 2012: 46-54
[c28]
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Elif Dede, Zacharia Fadika, Jessica Hartog, Madhusudhan Govindaraju, Lavanya Ramakrishnan, Dan Gunter, Shane Richard Canon:
MARISSA: MApReduce Implementation for Streaming Science Applications. eScience 2012: 1-8
[c27]
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Taghrid Samak, Dan Gunter, Zhong Wang:
Prediction of protein solubility in E. coli. eScience 2012: 1-8
[c26]
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Ezra Kissel, Ahmed El-Hassany, Guilherme Fernandes, D. Martin Swany, Dan Gunter, Taghrid Samak, Jennifer M. Schopf:
Scalable integrated performance analysis of multi-gigabit networks. NOMS 2012: 1227-1233
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Taghrid Samak, Dan Gunter, Valerie C. Hendrix:
Scalable analysis of network measurements with Hadoop and Pig. NOMS 2012: 1254-1259
[c24]
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Karan Vahi, Ian Harvey, Taghrid Samak, Daniel K. Gunter, Kieran Evans, David Rogers, Ian J. Taylor, Monte Goode, Fabio Silva, Eddie Al-Shakarchi, Gaurang Mehta, Andrew Jones, Ewa Deelman:
A General Approach to Real-Time Workflow Monitoring. SC Companion 2012: 108-118
[c23]
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Dan Gunter, Shreyas Cholia, Anubhav Jain, Michael Kocher, Kristin A. Persson, Lavanya Ramakrishnan, Shyue Ping Ong, Gerbrand Ceder:
Community Accessible Datastore of High-Throughput Calculations: Experiences from the Materials Project. SC Companion 2012: 1244-1251
[c22]
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Dan Gunter, Rajkumar Kettimuthu, Ezra Kissel, D. Martin Swany, Jun Yi, Jason Zurawski:
Exploiting Network Parallelism for Improving Data Transfer Performance. SC Companion 2012: 1600-1606
2011
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Scott Callaghan, Philip Maechling, Patrick Small, Kevin Milner, Gideon Juve, Thomas H. Jordan, Ewa Deelman, Gaurang Mehta, Karan Vahi, Dan Gunter, Keith Beattie, Christopher X. Brooks:
Metrics for heterogeneous scientific workflows: A case study of an earthquake science application. Int. J. High Perform. Comput. Appl. 25(3): 274-285 (2011)
[c21]
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Dan Gunter, Ewa Deelman, Taghrid Samak, Christopher X. Brooks, Monte Goode, Gideon Juve, Gaurang Mehta, Priscilla Moraes, Fabio Silva, D. Martin Swany, Karan Vahi:
Online workflow management and performance analysis with Stampede. CNSM 2011: 1-10
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Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gideon Juve, Gaurang Mehta, Fabio Silva, Karan Vahi:
Online Fault and Anomaly Detection for Large-Scale Scientific Workflows. HPCC 2011: 373-381
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Elif Dede, Madhusudhan Govindaraju, Daniel K. Gunter, Lavanya Ramakrishnan:
Riding the elephant: managing ensembles with hadoop. MTAGS@SC 2011: 49-58
[c18]
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Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gaurang Mehta, Fabio Silva, Karan Vahi:
Failure prediction and localization in large scientific workflows. WORKS@SC 2011: 107-116
2010
[j2]
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Scott Callaghan, Ewa Deelman, Dan Gunter, Gideon Juve, Philip Maechling, Christopher X. Brooks, Karan Vahi, Kevin Milner, Robert Graves, Edward Field, David Okaya, Thomas H. Jordan:
Scaling up workflow-based applications. J. Comput. Syst. Sci. 76(6): 428-446 (2010)
[c17]
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  - conf/hpdc/KettimuthuSGABBCCDFHHLLLMNPRRWWW10
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Rajkumar Kettimuthu, Alex Sim, Dan Gunter, Bill Allcock, Peer-Timo Bremer, John Bresnahan, Andrew Cherry, Lisa Childers, Eli Dart, Ian T. Foster, Kevin Harms, Jason Hick, Jason Lee, Michael Link, Jeff Long, Keith Miller, Vijaya Natarajan, Valerio Pascucci, Ken Raffenetti, David Ressman, Dean N. Williams, Loren Wilson, Linda Winkler:
Lessons learned from moving earth system grid data sets over a 20 Gbps wide-area network. HPDC 2010: 316-319

2000 – 2009

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2008
[c16]
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Scott Callaghan, Philip Maechling, Ewa Deelman, Karan Vahi, Gaurang Mehta, Gideon Juve, Kevin Milner, Robert Graves, Edward Field, David Okaya, Dan Gunter, Keith Beattie, Thomas H. Jordan:
Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake. eScience 2008: 151-158
2007
[c15]
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  - conf/cf/KamilPGLOS07
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Shoaib Kamil, Ali Pinar, Daniel K. Gunter, Michael Lijewski, Leonid Oliker, John Shalf:
Reconfigurable hybrid interconnection for static and dynamic scientific applications. Conf. Computing Frontiers 2007: 183-194
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Dan Gunter, Brian Tierney, Aaron Brown, D. Martin Swany, John Bresnahan, Jennifer M. Schopf:
Log summarization and anomaly detection for troubleshooting distributed systems. GRID 2007: 226-234
2006
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Jason Zurawski, D. Martin Swany, Dan Gunter:
A scalable framework for representation and exchange of network measurements. TRIDENTCOM 2006
2005
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Daniel K. Gunter, Keith R. Jackson, David E. Konerding, Jason Lee, Brian Tierney:
Essential Grid Workflow Monitoring Elements. GCA 2005: 39-45
[c11]
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Brian Tierney, Daniel K. Gunter:
Techniques for tuning workflows in cluster environments. HPDC 2005: 303-305
[c10]
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Stephen J. Bailey, Brian Tierney, Daniel K. Gunter:
Scalable Analysis of Distributed Workflow Traces. PDPTA 2005: 849-855
2003
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Dan Gunter, Brian Tierney, Craig E. Tull, Vibha Virmani:
On-Demand Grid Application Tuning and Debugging with the NetLogger Activation Service. GRID 2003: 76-83
[c8]
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Dan Gunter, Brian Tierney:
NetLogger: A Toolkit for Distributed System Performance Tuning and Debugging. Integrated Network Management 2003: 97-100
[i1]
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Craig E. Tull, Dan Gunter, Wim Lavrijsen, David R. Quarrie, Brian Tierney:
GMA Instrumentation of the Athena Framework using NetLogger. CoRR cs.DC/0306086 (2003)
2002
[c7]
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Dan Gunter, Brian Tierney, Keith R. Jackson, Jason Lee, Martin Stoufer:
Dynamic Monitoring of High-Performance Distributed Applications. HPDC 2002: 163-170
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Jason Lee, Dan Gunter, Martin Stoufer, Brian Tierney:
Monitoring data archives for grid environments. SC 2002: 49:1-49:10
2001
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Brian Tierney, Brian Crowley, Dan Gunter, Jason Lee, Mary R. Thompson:
A Monitoring Sensor Management System for Grid Environments. Clust. Comput. 4(1): 19-28 (2001)
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Brian Tierney, Dan Gunter, Jason Lee, Martin Stoufer, Joseph B. Evans:
Enabling Network-Aware Applications. HPDC 2001: 281-288
2000
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Brian Tierney, Brian Crowley, Dan Gunter, Mason Holding, Jason Lee, Mary R. Thompson:
A Monitoring Sensor Management System for Grid Environments. HPDC 2000: 97-104
[c3]
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  - conf/mascots/GunterTCHL00
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Dan Gunter, Brian Tierney, Brian Crowley, Mason Holding, Jason Lee:
NetLogger: A Toolkit for Distributed System Performance Analysis. MASCOTS 2000: 267-273
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E. Wes Bethel, Brian Tierney, Jason Lee, Dan Gunter, Stephen Lau:
Using High-Speed WANs and Network Data Caches to Enable Remote and Distributed Visualization. SC 2000: 28

1990 – 1999

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1998
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  - https://dblp.org/rec/conf/hpdc/TierneyJCHBG98
Brian Tierney, William E. Johnston, Brian Crowley, Gary Hoo, Christopher X. Brooks, Dan Gunter:
The NetLogger Methodology for High Performance Distributed Systems Performance Analysis. HPDC 1998: 260-267

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