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Indra Neil Sarkar
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2020 – today
- 2022
- [j37]Vivek Ramanan, Shanti Mechery, Indra Neil Sarkar
:
GenBank as a source to monitor and analyze Host-Microbiome data. Bioinform. 38(17): 4172-4177 (2022) - [j36]Emily R. Pfaff
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. J. Am. Medical Informatics Assoc. 29(4): 609-618 (2022) - [c47]Katherine A. Brown, Indra Neil Sarkar, Karen Crowley, Dilum P. Aluthge, Elizabeth S. Chen:
An Unsupervised Cluster Analysis of Post-COVID-19 Mental Health Outcomes and Associated Comorbidities. AMIA 2022 - 2021
- [c46]Aaron S. Eisman, Katherine A. Brown, Elizabeth S. Chen, Indra Neil Sarkar:
Clinical Note Section Detection Using a Hidden Markov Model of Unified Medical Language System Semantic Types. AMIA 2021 - [c45]Jessica D. Tenenbaum, Theresa Cullen, Indra Neil Sarkar, Philip R. O. Payne, Brian E. Dixon:
Public Health Informatics in a Global Pandemic: In the COVID response trenches. AMIA 2021 - 2020
- [c44]Katherine A. Brown, Indra Neil Sarkar, Elizabeth S. Chen:
Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. AMIA 2020 - [c43]Aaron S. Eisman, Nishant R. Shah, Carsten Eickhoff, George Zerveas, Elizabeth S. Chen, Wen-Chih Wu, Indra Neil Sarkar:
Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures. AMIA 2020 - [c42]Sotiris Karagounis, Indra Neil Sarkar, Elizabeth S. Chen:
Coding Free-Text Chief Complaints from a Health Information Exchange: A Preliminary Study. AMIA 2020 - [c41]Jiaying Lai, Indra Neil Sarkar:
A Phylogenetic Approach to Analyze the Conservativeness of BRCA1 and BRCA2 Mutations. AMIA 2020 - [i1]Aaron S. Eisman, Nishant R. Shah, Carsten Eickhoff, George Zerveas, Elizabeth S. Chen, Wen-Chih Wu, Indra Neil Sarkar:
Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures. CoRR abs/2010.05757 (2020)
2010 – 2019
- 2019
- [j35]Jessica Schuster, Michael Superdock
Machine learning approach to literature mining for the genetics of complex diseases. Database J. Biol. Databases Curation 2019: baz124 (2019) - [j34]Vivekanand Sharma, Maria Isabel Restrepo, Indra Neil Sarkar
Solr-Plant: efficient extraction of plant names from text. BMC Bioinform. 20(1): 263:1-263:4 (2019) - [c40]Indra Neil Sarkar, Wayne Law, Michael J. Balick:
Identifying Phytochemicals from Biomedical Literature Utilizing Semantic Knowledge Sources. MedInfo 2019: 278-282 - [c39]Isaac E. Kim Jr.
Racial Representation Disparity of Population-Level Genomic Sequencing Efforts. MedInfo 2019: 974-978 - [c38]Maria I. Restrepo, Mary C. McGrath, Indra Neil Sarkar, Elizabeth S. Chen:
Web-Based Visualization of MeSH-Based PubMed/MEDLINE Statistics. MedInfo 2019: 1490-1491 - 2018
- [c37]Sukrit S. Jain, Indra Neil Sarkar, Paul Stey, Rajsavi S. Anand, Dustin R. Biron, Elizabeth S. Chen:
Using Demographic Factors and Comorbidities to Develop a Predictive Model for ICU Mortality in Patients with Acute Exacerbation COPD. AMIA 2018 - [c36]Justin E. Kleiner, Michael Cohen, Dilum P. Aluthge, Ishan Sinha, Indra Neil Sarkar, Elizabeth S. Chen, Dario R. Roque:
Predicting Thromboembolism after Vaginal and Laparoscopic Hysterectomy in Gynecologic Oncology Patients using Machine Learning. AMIA 2018 - [c35]Jonathan T. Vu, Dilum P. Aluthge, Ishan Sinha, Elizabeth S. Chen, Indra Neil Sarkar:
Predicting the Costs of Medical Liability Using Artificial Neural Networks. AMIA 2018 - [c34]Vivekanand Sharma, Indra Neil Sarkar:
Identifying natural health product and dietary supplement information within adverse event reporting systems. PSB 2018: 268-279 - 2017
- [j33]Julia Adler-Milstein, Peter J. Embí, Blackford Middleton
Crossing the health IT chasm: considerations and policy recommendations to overcome current challenges and enable value-based care. J. Am. Medical Informatics Assoc. 24(5): 1036-1043 (2017) - [c33]Aaron S. Eisman, Rory B. Weiner, Elizabeth S. Chen, Paul Stey, Rishi K. Wadhera, Aaron P. Kithcart, Indra Neil Sarkar:
An Automated System for Categorizing Transthoracic Echocardiography Indications According to the Echocardiography Appropriate Use Criteria. AMIA 2017 - [c32]Ashley S. Lee, Indra Neil Sarkar, Genevieve B. Melton, Yuanqing Liu, Vivekanand Sharma, Elizabeth S. Chen:
Comorbidity Miner: An Open Source Interactive Tool for Mining Disparate Electronic Health Data Sources. AMIA 2017 - [c31]Vivekanand Sharma, Wayne Law, Michael J. Balick, Indra Neil Sarkar:
Harnessing Biomedical Natural Language Processing Tools to Identify Medicinal Plant Knowledge from Historical Texts. AMIA 2017 - [c30]Margaret M. Thorsen, Indra Neil Sarkar, Elizabeth S. Chen, Elaine Fontaine, Gregory Walker, Megan L. Ranney:
Assessing Data Quality within Health Information Exchanges: A Case Study for Supporting Emergency Department Research. AMIA 2017 - 2016
- [j32]Laura K. Wiley
Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting. J. Am. Medical Informatics Assoc. 23(2): 413-419 (2016) - [j31]Kim M. Unertl
Developing new pathways into the biomedical informatics field: the AMIA High School Scholars Program. J. Am. Medical Informatics Assoc. 23(4): 819-823 (2016) - [c29]David Boone, John T. Finnell, Kim M. Unertl, Indra Neil Sarkar:
New Pathways Into Biomedical Informatics: Educational Outreach Programs for High School Students. AMIA 2016 - [c28]Elizabeth S. Chen, Genevieve B. Melton, Mark Howison, Erik Knoll, Ashley S. Lee, Indra Neil Sarkar:
Mining and Visualizing Sequential Patterns in the Electronic Health Record: A Case Study for Asthma With and Without Mental Disorders. AMIA 2016 - [c27]Saif S. Khairat, Glynda Doyle, Indra Neil Sarkar, Jeff Williamson:
Report from the ED-WG Frontline: Biomedical and Health Informatics Baccalaureate (BHIB) Course. AMIA 2016 - [c26]Yan Wang, Elizabeth S. Chen, Ilo Leppik, Serguei V. S. Pakhomov, Indra Neil Sarkar, Genevieve B. Melton:
Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record. CRI 2016 - [c25]Kaija Saranto, Elizabeth M. Borycki, Indra Neil Sarkar:
How to Prepare a Nursing Informatics Conference Submission. Nursing Informatics 2016: 703-704 - 2015
- [j30]Elizabeth S. Chen, Elizabeth W. Carter, Tamara Winden, Indra Neil Sarkar, Yan Wang, Genevieve B. Melton
Multi-source development of an integrated model for family health history. J. Am. Medical Informatics Assoc. 22(e1): e67-e80 (2015) - [j29]Joseph D. Romano
Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships. J. Biomed. Informatics 54: 10-38 (2015) - [c24]Elizabeth W. Carter, Indra Neil Sarkar, Genevieve B. Melton, Elizabeth S. Chen:
Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures. AMIA 2015 - [c23]Elizabeth S. Chen, Genevieve B. Melton, Richard Wasserman, Paul Rosenau, Diantha B. Howard, Indra Neil Sarkar:
Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma. AMIA 2015 - [c22]Darlene Peterson, Timothy E. Burdick, Joshua Cohen, Indra Neil Sarkar, Julie Lin, Dennis Plante, Elizabeth S. Chen:
Surveying Problem List Perceptions and Use in the Electronic Health Record. AMIA 2015 - [c21]Yan Wang, Elizabeth S. Chen, Serguei V. S. Pakhomov, Elliot G. Arsoniadis, Elizabeth W. Carter, Elizabeth Lindemann, Indra Neil Sarkar, Genevieve B. Melton:
Automated Extraction of Substance Use Information from Clinical Texts. AMIA 2015 - [e1]Indra Neil Sarkar, Andrew Georgiou, Paulo Mazzoncini de Azevedo Marques:
MEDINFO 2015: eHealth-enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics, São Paulo, Brazil, 19-23 August 2015. Studies in Health Technology and Informatics 216, IOS Press 2015, ISBN 978-1-61499-563-0 [contents] - 2014
- [j28]Adam Sateriale
Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds. J. Am. Medical Informatics Assoc. 21(2): 238-244 (2014) - [j27]Ahmed Ragab Nabhan, Indra Neil Sarkar:
Structural network analysis of biological networks for assessment of potential disease model organisms. J. Biomed. Informatics 47: 178-191 (2014) - [c20]Elizabeth S. Chen, Elizabeth W. Carter, Indra Neil Sarkar, Tamara Winden, Genevieve B. Melton:
Examining the Use, Contents, and Quality of Free-Text Tobacco Use Documentation in the Electronic Health Record. AMIA 2014 - [c19]Indra Neil Sarkar, Elizabeth S. Chen, Paul Rosenau, Matthew B. Storer, Beth Anderson, Jeffrey D. Horbar:
Using Arden Syntax to Identify Registry-Eligible Very Low Birth Weight Neonates from the Electronic Health Record. AMIA 2014 - [c18]Yucan Zhang, Indra Neil Sarkar, Elizabeth S. Chen:
PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed. AMIA 2014 - 2013
- [j26]Vivekanand Sharma, Indra Neil Sarkar:
Bioinformatics opportunities for identification and study of medicinal plants. Briefings Bioinform. 14(2): 238-250 (2013) - [j25]Vivekanand Sharma, Indra Neil Sarkar:
Research and applications: Leveraging biodiversity knowledge for potential phyto-therapeutic applications. J. Am. Medical Informatics Assoc. 20(4): 668-679 (2013) - [j24]Vivekanand Sharma, Indra Neil Sarkar
Leveraging concept-based approaches to identify potential phyto-therapies. J. Biomed. Informatics 46(4): 602-614 (2013) - [j23]Philip R. O. Payne
People, organizational, and leadership factors impacting informatics support for clinical and translational research. BMC Medical Informatics Decis. Mak. 13: 20 (2013) - [c17]Elizabeth S. Chen, Elizabeth W. Carter, Tamara Winden, Indra Neil Sarkar, Genevieve B. Melton:
Development of a Comprehensive Family Health History Information Model. AMIA 2013 - [c16]Indra Neil Sarkar, Elizabeth S. Chen, Steven J. Kappel:
Resolving and Standardizing Providers within Administrative Data. AMIA 2013 - 2012
- [j22]Ahmed Ragab Nabhan, Indra Neil Sarkar:
The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy. Briefings Bioinform. 13(1): 122-134 (2012) - [j21]Indra Neil Sarkar:
A vector space model approach to identify genetically related diseases. J. Am. Medical Informatics Assoc. 19(2): 249-254 (2012) - [j20]Elizabeth S. Chen, Genevieve B. Melton
Translating standards into practice: Experiences and lessons learned in biomedicine and health care. J. Biomed. Informatics 45(4): 609-612 (2012) - [c15]Elizabeth S. Chen, Genevieve B. Melton, Timothy E. Burdick, Paul Rosenau, Indra Neil Sarkar:
Characterizing the Use and Contents of Free-Text Family History Comments in the Electronic Health Record. AMIA 2012 - [c14]Genevieve B. Melton, Sharad Manaktala, Indra Neil Sarkar, Elizabeth S. Chen:
Social and Behavioral History Information in Public Health Datasets. AMIA 2012 - [c13]Ahmed Ragab Nabhan, Indra Neil Sarkar:
Mining Disease Fingerprints From Within Genetic Pathways. AMIA 2012 - [c12]Indra Neil Sarkar, Elizabeth S. Chen:
Determining Compound Comorbidities for Heart Failure from Hospital Discharge Data. AMIA 2012 - 2011
- [j19]Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier
Translational bioinformatics: linking knowledge across biological and clinical realms. J. Am. Medical Informatics Assoc. 18(4): 354-357 (2011) - [j18]Indra Neil Sarkar
The joint summits on translational science: Crossing the translational chasm. J. Biomed. Informatics 44(Supplement-1): S1-S2 (2011) - [j17]Indra Neil Sarkar
Selected Papers from the 2011 Summit on Translational Bioinformatics. J. Biomed. Informatics 44(Supplement-1): S3-S4 (2011) - [j16]Matthew Scotch
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44(Supplement-1): S44-S47 (2011) - 2010
- [j15]Indra Neil Sarkar:
Editorial: Bioinformatics education in the 21st century. Briefings Bioinform. 11(6): 535-536 (2010) - [j14]Genevieve B. Melton
Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report. J. Am. Medical Informatics Assoc. 17(3): 337-340 (2010) - [j13]Elizabeth S. Chen, Indra Neil Sarkar
MeSHing molecular sequences and clinical trials: A feasibility study. J. Biomed. Informatics 43(3): 442-450 (2010)
2000 – 2009
- 2009
- [j12]Indra Neil Sarkar:
Biodiversity Informatics: the emergence of a field. BMC Bioinform. 10(S-14): 1 (2009) - [j11]Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya:
Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinform. 10(S-2) (2009) - [j10]Yves A. Lussier, Indra Neil Sarkar:
Selected proceedings of the 2009 Summit on Translational Bioinformatics. BMC Bioinform. 10(S-9): 0 (2009) - [c11]Indra Neil Sarkar, Ryan Schenk, Holly Miller, Catherine N. Norton:
LigerCat: Using "MeSH Clouds" from Journal, Article, or Gene Citations to Facilitate the Identification of Relevant Biomedical Literature. AMIA 2009 - 2008
- [j9]Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics. BMC Bioinform. 9 (2008) - 2007
- [j8]Indra Neil Sarkar:
Biodiversity informatics: organizing and linking information across the spectrum of life. Briefings Bioinform. 8(5): 347-357 (2007) - [j7]Patrick R. Leary, David P. Remsen, Catherine N. Norton, David J. Patterson
uBioRSS: Tracking taxonomic literature using RSS. Bioinform. 23(11): 1434-1436 (2007) - [c10]Indra Neil Sarkar:
Session Introduction. Pacific Symposium on Biocomputing 2007: 340-342 - 2006
- [j6]Joanna C. Chiu, Ernest K. Lee
OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinform. 22(6): 699-707 (2006) - [j5]Indra Neil Sarkar
Phylogenetics in the modern era. J. Biomed. Informatics 39(1): 3-5 (2006) - [c9]Indra Neil Sarkar, Abha Agrawal:
Literature Based Discovery of Gene Clusters Using Phylogenetic Methods. AMIA 2006 - [c8]Chif N. Umejei, Indra Neil Sarkar:
zMedline: A Medline-Based Content Management System. AMIA 2006 - 2005
- [j4]Paul J. Planet, Indra Neil Sarkar:
mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinform. 21(24): 4423-4424 (2005) - [c7]Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier:
GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. Pacific Symposium on Biocomputing 2005: 116-127 - 2004
- [j3]Jeffrey A. Rosenfeld, Indra Neil Sarkar, Paul J. Planet, David H. Figurski, Robert DeSalle:
ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinform. 20(18): 3462-3465 (2004) - 2003
- [c6]Michael N. Cantor, Indra Neil Sarkar, R. Gelman, Frank W. Hartel, Olivier Bodenreider, Yves A. Lussier
An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS®$. MIE 2003: 62-67 - [c5]Indra Neil Sarkar, Michael N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier:
Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. Pacific Symposium on Biocomputing 2003: 427-450 - 2002
- [j2]Indra Neil Sarkar, Justin Starren:
Implementation Brief: Desiderata for Personal Electronic Communication in Clinical Systems. J. Am. Medical Informatics Assoc. 9(3): 209-216 (2002) - [j1]Indra Neil Sarkar, Paul J. Planet, T. E. Bael, S. E. Stanley, Mark Siddall, Robert DeSalle, David H. Figurski:
Characteristic attributes in cancer microarrays. J. Biomed. Informatics 35(2): 111-122 (2002) - [c4]Yves A. Lussier, Indra Neil Sarkar, Michael Cantor:
An integrative model for in-silico clinical-genomics discovery science. AMIA 2002 - [c3]Indra Neil Sarkar, Michael N. Cantor, Robert DeSalle, Yves A. Lussier:
Exploring SNOMED Using Phylogenetic Analysis Tools. AMIA 2002 - [c2]Indra Neil Sarkar, Thomas C. Rindflesch:
Discovering protein similarity using natural language processing. AMIA 2002 - 2001
- [c1]Indra Neil Sarkar, Paul J. Planet, Robert DeSalle, David H. Figurski:
Knowledge Aggregation from Organized Sets (KAOS) Applied to Clinical Data. AMIA 2001
Coauthor Index
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