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Lachlan James M. Coin
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2020 – today
- 2024
- [j27]Cong Wang
, Zhijie He
PLANNER: A Multi-Scale Deep Language Model for the Origins of Replication Site Prediction. IEEE J. Biomed. Health Informatics 28(4): 2445-2454 (2024) - 2023
- [j26]Ruyi Chen
ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species. Briefings Bioinform. 24(3) (2023) - [j25]Yan Zhu
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters. Briefings Bioinform. 24(4) (2023) - [j24]Fuyi Li
Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins. Comput. Biol. Medicine 163: 107155 (2023) - 2022
- [j23]Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb
Positive-unlabeled learning in bioinformatics and computational biology: a brief review. Briefings Bioinform. 23(1) (2022) - [j22]Meng Zhang
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction. Briefings Bioinform. 23(2) (2022) - [j21]Quanzhong Liu
DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions. Bioinform. 38(17): 4053-4061 (2022) - [j20]Eike Steinig
Nanoq: ultra-fast quality control for nanopore reads. J. Open Source Softw. 7(69): 2991 (2022) - 2021
- [j19]Fuyi Li
Porpoise: a new approach for accurate prediction of RNA pseudouridine sites. Briefings Bioinform. 22(6) (2021) - [j18]Son Hoang Nguyen
Real-time resolution of short-read assembly graph using ONT long reads. PLoS Comput. Biol. 17(1) (2021)
2010 – 2019
- 2018
- [j17]Minh Duc Cao, Devika Ganesamoorthy, Chenxi Zhou
Simulating the dynamics of targeted capture sequencing with CapSim. Bioinform. 34(5): 873-874 (2018) - [j16]Haojing Shao, Devika Ganesamoorthy, Tania P. S. Duarte
npInv: accurate detection and genotyping of inversions using long read sub-alignment. BMC Bioinform. 19(1): 261:1-261:13 (2018) - [j15]Devika Ganesamoorthy
GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing. BMC Bioinform. 19(1): 267:1-267:14 (2018) - 2017
- [j14]Son Hoang Nguyen
Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode. Bioinform. 33(24): 3988-3990 (2017) - 2016
- [j13]Minh Duc Cao
Realtime analysis and visualization of MinION sequencing data with npReader. Bioinform. 32(5): 764-766 (2016) - 2014
- [j12]Evangelos Bellos
cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data. Bioinform. 30(17): 639-645 (2014) - 2013
- [j11]Fan Zhang
YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data. BMC Bioinform. 14: 331 (2013) - 2012
- [j10]Lachlan James M. Coin
An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis. Bioinform. 28(18): 370-374 (2012) - 2011
- [j9]Hariklia Eleftherohorinou, Johanna C. Andersson-Assarsson
famCNV: copy number variant association for quantitative traits in families. Bioinform. 27(13): 1873-1875 (2011) - 2010
- [j8]Paul F. O'Reilly
invertFREGENE: software for simulating inversions in population genetic data. Bioinform. 26(6): 838-840 (2010) - [j7]Shu-Yi Su, Julian E. Asher, Marjo-Riitta Järvelin
Inferring combined CNV/SNP haplotypes from genotype data. Bioinform. 26(11): 1437-1445 (2010)
2000 – 2009
- 2008
- [j6]Shu-Yi Su, David J. Balding
Disease association tests by inferring ancestral haplotypes using a hidden markov model. Bioinform. 24(7): 972-978 (2008) - [j5]Shu-Yi Su, Jonathan White, David J. Balding
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions. BMC Bioinform. 9 (2008) - [j4]Jue Ruan
TreeFam: 2008 Update. Nucleic Acids Res. 36(Database-Issue): 735-740 (2008) - 2006
- [j3]Heng Li
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34(Database-Issue): 572-580 (2006) - 2004
- [j2]Lachlan James M. Coin
Enhanced protein domain discovery using taxonomy. BMC Bioinform. 5: 56 (2004) - [j1]Alex Bateman
The Pfam protein families database. Nucleic Acids Res. 32(Database-Issue): 138-141 (2004) - [c1]Lachlan James M. Coin
Improved techniques for the identification of pseudogenes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 94-100
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last updated on 2024-10-07 21:23 CEST by the dblp team
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