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Kathleen M. Jagodnik
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Journal Articles
- 2022
- [j15]Eryk Kropiwnicki, Alexander Lachmann, Daniel J. B. Clarke
, Zhuorui Xie, Kathleen M. Jagodnik, Avi Ma'ayan
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules. BMC Bioinform. 23(1): 76 (2022) - [j14]Alon Bartal
Progress in and Opportunities for Applying Information Theory to Computational Biology and Bioinformatics. Entropy 24(7): 925 (2022) - [j13]John Erol Evangelista
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022) - 2021
- [j12]Eryk Kropiwnicki, John Erol Evangelista
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning. Database J. Biol. Databases Curation 2021 (2021) - [j11]Alon Bartal
Role-Aware Information Spread in Online Social Networks. Entropy 23(11): 1542 (2021) - [j10]Daniel J. B. Clarke
Appyters: Turning Jupyter Notebooks into data-driven web apps. Patterns 2(3): 100213 (2021) - 2020
- [j9]Alon Bartal, Alexander Lachmann, Daniel J. B. Clarke
EnrichrBot: Twitter bot tracking tweets about human genes. Bioinform. 36(12): 3932-3934 (2020) - [j8]Maxim V. Kuleshov
The COVID-19 Drug and Gene Set Library. Patterns 1(6): 100090 (2020) - 2019
- [j7]Zichen Wang
Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures. Bioinform. 35(7): 1247-1248 (2019) - [j6]Alexandra B. Keenan, Denis Torre
ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Nucleic Acids Res. 47(Webserver-Issue): W212-W224 (2019) - 2018
- [j5]Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. Nucleic Acids Res. 46(Database-Issue): D558-D566 (2018) - 2017
- [j4]Kathleen M. Jagodnik, Simon Koplev
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics 71: 49-57 (2017) - 2016
- [j3]Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland
GEN3VA: aggregation and analysis of gene expression signatures from related studies. BMC Bioinform. 17: 461:1-461:12 (2016) - [j2]Maxim V. Kuleshov
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Res. 44(Webserver-Issue): W90-W97 (2016) - [j1]Kathleen M. Jagodnik
Human-Like Rewards to Train a Reinforcement Learning Controller for Planar Arm Movement. IEEE Trans. Hum. Mach. Syst. 46(5): 723-733 (2016)
Conference and Workshop Papers
- 2017
- [c3]Amrapali Zaveri
smartAPI: Towards a More Intelligent Network of Web APIs. ESWC (2) 2017: 154-169 - [c2]Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier:
The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) 2017 - 2009
- [c1]Philip S. Thomas, Antonie J. van den Bogert, Kathleen M. Jagodnik, Michael S. Branicky:
Application of the Actor-Critic Architecture to Functional Electrical Stimulation Control of a Human Arm. IAAI 2009
Informal and Other Publications
- 2024
- [i1]Alon Bartal, Kathleen M. Jagodnik, Nava Pliskin, Abraham Seidmann:
Utilizing AI and Social Media Analytics to Discover Adverse Side Effects of GLP-1 Receptor Agonists. CoRR abs/2404.01358 (2024)
Coauthor Index
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