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Stefan Canzar
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2020 – today
- 2024
- [j20]Stefan Canzar
, Van Hoan Do, Slobodan Jelic, Sören Laue, Domagoj Matijevic, Tomislav Prusina:
Metric multidimensional scaling for large single-cell datasets using neural networks. Algorithms Mol. Biol. 19(1): 21 (2024) - [j19]Mislav Blazevic, Stefan Canzar
Anti Tai mapping for unordered labeled trees. Inf. Process. Lett. 185: 106454 (2024) - 2023
- [c20]Van Hoan Do
Identifying Cell Types in Single-Cell Multimodal Omics Data via Joint Embedding Learning. KSE 2023: 1-6 - [c19]Bartol Borozan, Luka Borozan, Domagoj Severdija, Domagoj Matijevic, Stefan Canzar
Fortuna Detects Novel Splicing in Drosophila scRNASeq Data. MIPRO 2023: 410-415 - 2022
- [c18]Antonio Jovanovic, Israa Alqassem, Nathan Chappell, Stefan Canzar
Predicting RNA splicing branchpoints. MIPRO 2022: 383-388 - 2021
- [j18]Olga Lazareva, Stefan Canzar
BiCoN: network-constrained biclustering of patients and omics data. Bioinform. 37(16): 2398-2404 (2021) - [i4]Mislav Blazevic, Stefan Canzar, Khaled M. Elbassioni, Domagoj Matijevic:
Anti Tai Mapping for Unordered Labeled Trees. CoRR abs/2107.08292 (2021) - 2020
- [j17]Shounak Chakraborty, Stefan Canzar
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. J. Comput. Biol. 27(3): 330-341 (2020) - [e1]Stefan Canzar
Protein-Protein Interaction Networks, Methods and Protocols. Methods in Molecular Biology 2074, Springer 2020, ISBN 978-1-4939-9872-2 [contents]
2010 – 2019
- 2019
- [j16]Dinanath Sulakhe, Mark D'Souza, Sheng Wang
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. Briefings Bioinform. 20(5): 1754-1768 (2019) - [c17]Luka Borozan, Domagoj Matijevic, Stefan Canzar
Properties of the generalized Robinson-Foulds metric. MIPRO 2019: 330-335 - [c16]Van Hoan Do, Mislav Blazevic, Pablo Monteagudo, Luka Borozan, Khaled M. Elbassioni, Sören Laue, Francisca Rojas Ringeling, Domagoj Matijevic, Stefan Canzar:
Dynamic Pseudo-time Warping of Complex Single-Cell Trajectories. RECOMB 2019: 294-296 - 2018
- [j15]Stefan Canzar
On the approximability of the maximum interval constrained coloring problem. Discret. Optim. 27: 57-72 (2018) - [c15]Shounak Chakraborty, Stefan Canzar
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. RECOMB 2018: 21-36 - 2017
- [j14]Stefan Canzar
BASIC: BCR assembly from single cells. Bioinform. 33(3): 425-427 (2017) - [j13]Stefan Canzar
Short Read Mapping: An Algorithmic Tour. Proc. IEEE 105(3): 436-458 (2017) - 2016
- [j12]Somaye Hashemifar, Jianzhu Ma, Hammad Naveed
ModuleAlign: module-based global alignment of protein-protein interaction networks. Bioinform. 32(17): 658-664 (2016) - [j11]Stefan Canzar
Resolving Conflicting Predictions from Multimapping Reads. J. Comput. Biol. 23(3): 203-217 (2016) - 2015
- [j10]Stefan Canzar
On Tree-Constrained Matchings and Generalizations. Algorithmica 71(1): 98-119 (2015) - [c14]Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert
CIDANE: Comprehensive Isoform Discovery and Abundance Estimation. RECOMB 2015: 60-61 - 2013
- [j9]Tanja Magoc, Stephan Pabinger
GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinform. 29(14): 1718-1725 (2013) - [j8]Stefan Canzar
Charge Group Partitioning in Biomolecular Simulation. J. Comput. Biol. 20(3): 188-198 (2013) - [j7]Sandro Andreotti
The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees. J. Comput. Biol. 20(9): 643-659 (2013) - [j6]Stefan Canzar
A polynomial-delay algorithm for enumerating approximate solutions to the interval constrained coloring problem. ACM J. Exp. Algorithmics 18 (2013) - [c13]Sebastian Böcker
The Generalized Robinson-Foulds Metric. WABI 2013: 156-169 - [i3]Sebastian Böcker
The generalized Robinson-Foulds metric. CoRR abs/1307.7824 (2013) - 2012
- [j5]Tobias Marschall
CLEVER: clique-enumerating variant finder. Bioinform. 28(22): 2875-2882 (2012) - [c12]Stefan Canzar
Solving the Minimum String Cover Problem. ALENEX 2012: 75-83 - [c11]Stefan Canzar
Charge Group Partitioning in Biomolecular Simulation. RECOMB 2012: 29-43 - [i2]Stefan Canzar, Sandro Andreotti:
A Branch-and-Cut Algorithm for the 2-Species Duplication-Loss Phylogeny Problem. CoRR abs/1208.2698 (2012) - 2011
- [j4]Ernst Althaus, Stefan Canzar
Approximation Algorithms for the Interval Constrained Coloring Problem. Algorithmica 61(2): 342-361 (2011) - [j3]Stefan Canzar
An exact algorithm for side-chain placement in protein design. Optim. Lett. 5(3): 393-406 (2011) - [c10]Stefan Canzar
On Tree-Constrained Matchings and Generalizations. ICALP (1) 2011: 98-109 - [c9]Stefan Canzar
A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding. WABI 2011: 26-38 - [i1]Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau:
An Exact Algorithm for Side-Chain Placement in Protein Design. CoRR abs/1103.1503 (2011) - 2010
- [j2]Ernst Althaus, Stefan Canzar
Computing H/D-Exchange rates of single residues from data of proteolytic fragments. BMC Bioinform. 11: 424 (2010) - [c8]Stefan Canzar
A Polynomial Delay Algorithm for Enumerating Approximate Solutions to the Interval Constrained Coloring Problem. ALENEX 2010: 23-33 - [c7]Stefan Canzar
On the Approximability of the Maximum Interval Constrained Coloring Problem. ISAAC (2) 2010: 168-179
2000 – 2009
- 2009
- [c6]Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah Tiptopn, Huimin Zhang:
Discrete Fitting of Hydrogen-Deuterium-Exchange-data of Overlapping Fragments. BIOCOMP 2009: 496-502 - 2008
- [b1]Stefan Canzar:
Lagrangian Relaxation - Solving NP-hard Problems in Computational Biology via Combinatorial Optimization. Henri Poincaré University, Nancy, France, 2008 - [j1]Ernst Althaus, Stefan Canzar
A Lagrangian relaxation approach for the multiple sequence alignment problem. J. Comb. Optim. 16(2): 127-154 (2008) - [c5]Ernst Althaus, Stefan Canzar
LASA: A Tool for Non-heuristic Alignment of Multiple Sequences. BIRD 2008: 489-498 - [c4]Ernst Althaus, Stefan Canzar
Computing H/D-exchange speeds of single residues from data of peptic fragments. SAC 2008: 1273-1277 - [c3]Ernst Althaus, Stefan Canzar
Approximating the Interval Constrained Coloring Problem. SWAT 2008: 210-221 - 2007
- [c2]Ernst Althaus, Stefan Canzar
A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem. COCOA 2007: 267-278 - 2006
- [c1]Stefan Canzar, Jan Remy:
Shape Distributions and Protein Similarity. German Conference on Bioinformatics 2006: 1-10
Coauthor Index
aka: Khaled Elbassioni
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