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Rolf Kaiser
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2020 – today
- 2023
- [j12]Nicholas I-Hsien Kuo, Federico Garcia
, Anders Sönnerborg
Generating synthetic clinical data that capture class imbalanced distributions with generative adversarial networks: Example using antiretroviral therapy for HIV. J. Biomed. Informatics 144: 104436 (2023) - [i1]Giulia Di Teodoro, Martin Pirkl, Francesca Incardona, Ilaria Vicenti, Anders Sönnerborg, Rolf Kaiser, Laura Palagi, Maurizio Zazzi, Thomas Lengauer:
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. CoRR abs/2311.04846 (2023) - 2020
- [c8]Carolin E. M. Jakob, Melanie Stecher, Sandra Fuhrmann, Sebastian Wingen-Heimann, Stephanie Heinen, Gabriele Anton
Needs for an Integration of Specific Data Sources and Items - First Insights of a National Survey Within the German Center for Infection Research. GMDS 2020: 237-244
2010 – 2019
- 2018
- [j11]Matthias Döring
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data. Nucleic Acids Res. 46(Webserver-Issue): W271-W277 (2018) - 2013
- [j10]Pieter Libin
RegaDB: community-driven data management and analysis for infectious diseases. Bioinform. 29(11): 1477-1480 (2013) - [j9]Katarzyna Bozek, Thomas Lengauer, Saleta Sierra, Rolf Kaiser, Francisco S. Domingues
Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage. PLoS Comput. Biol. 9(3) (2013) - 2012
- [c7]Jasmina Bogojeska, Daniel Stöckel, Maurizio Zazzi, Rolf Kaiser, Francesca Incardona, Michal Rosen-Zvi, Thomas Lengauer:
History-alignment models for bias-aware prediction of virological response to HIV combination therapy. AISTATS 2012: 118-126 - 2011
- [j8]Martin Däumer, Rolf Kaiser, Rolf Klein, Thomas Lengauer, Bernhard Thiele, Alexander Thielen:
Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis. BMC Medical Informatics Decis. Mak. 11: 30 (2011) - 2010
- [j7]Thomas Lengauer, André Altmann
Chasing the AIDS virus. Commun. ACM 53(3): 66-74 (2010)
2000 – 2009
- 2008
- [c6]Michal Rosen-Zvi
Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB 2008: 399-406 - 2006
- [c5]Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann
Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194 - 2005
- [j6]Niko Beerenwinkel, Jörg Rahnenführer
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. 21(9): 2106-2107 (2005) - [j5]Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. 21(21): 3943-3950 (2005) - [j4]Niko Beerenwinkel, Jörg Rahnenführer
Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. 12(6): 584-598 (2005) - [c4]Tobias Sing, Valentina Svicher
Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. PKDD 2005: 285-296 - 2004
- [c3]Niko Beerenwinkel, Jörg Rahnenführer
Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44 - 2003
- [j3]Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. 31(13): 3850-3855 (2003) - [c2]Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig:
Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25 - 2002
- [j2]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Natl. Acad. Sci. USA 99(12): 8271-8276 (2002) - 2001
- [j1]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intell. Syst. 16(6): 35-41 (2001) - [c1]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130
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