Patterns, Volume 4

Volume 4, Number 1, January 2023

Perspectives

• 
  Alex De Vries:
  Cryptocurrencies on the road to sustainability: Ethereum paving the way for Bitcoin. 100633

Articles

• 
  Jiheum Park, Michael G. Artin, Kate E. Lee, Benjamin L. May, Michael Park, Chin Hur, Nicholas P. Tatonetti:
  Structured deep embedding model to generate composite clinical indices from electronic health records for early detection of pancreatic cancer. 100636

Review

• 
  Maged Helmy, Tuyen Trung Truong, Eric Jul, Paulo Ferreira:
  Deep learning and computer vision techniques for microcirculation analysis: A review. 100641

Articles

• 
  Yi Wang, Zijun Sun, Qiu-Shun He, Jiwei Li, Ming Ni, Meng Yang:
  Self-supervised graph representation learning integrates multiple molecular networks and decodes gene-disease relationships. 100651

Perspectives

• 
  Travis Greene, Amit Dhurandhar, Galit Shmueli:
  Atomist or holist? A diagnosis and vision for more productive interdisciplinary AI ethics dialogue. 100652

Articles

• 
  Robin Vandaele, Pritam Mukherjee, Heather Marie Selby, Rajesh Pravin Shah, Olivier Gevaert:
  Topological data analysis of thoracic radiographic images shows improved radiomics-based lung tumor histology prediction. 100657
• 
  Wan Xiang Shen, Shu Ran Liang, Yu Yang Jiang, Yuzong Chen:
  Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations. 100658

Descriptor

• 
  Robert Leaman, Rezarta Islamaj, Alexis Allot, Qingyu Chen, W. John Wilbur, Zhiyong Lu:
  Comprehensively identifying Long Covid articles with human-in-the-loop machine learning. 100659

Articles

• 
  Florimond Houssiau, Piotr Sapiezynski, Laura Radaelli, Erez Shmueli, Yves-Alexandre de Montjoye:
  Detrimental network effects in privacy: A graph-theoretic model for node-based intrusions. 100662
• 
  Joshua R. Waite, Sin Yong Tan, Homagni Saha, Soumik Sarkar, Anwesha Sarkar:
  Few-shot deep learning for AFM force curve characterization of single-molecule interactions. 100672

People of Data

• 
  Wan Xiang Shen, Yuzong Chen:
  Toward ordered -omics data science: Researchers on the magic of turning metagenomic chaos into image-like patterns. 100673

Opinions

• 
  Steve Cranford:
  Data science's communication problem in three films. 100675
• 
  Joyjit Chatterjee, Nina Dethlefs:
  This new conversational AI model can be your friend, philosopher, and guide ... and even your worst enemy. 100676
• 
  Steve Cranford:
  One more thing ... Patterns 2.0. 100677

Volume 4, Number 2, February 2023

Articles

• 
  Filip Dinic, Zhibo Wang, Ihor Neporozhnii, Usama Bin Salim, Rochan Bajpai, Navneeth Rajiv, Vedant Chavda, Vishal Radhakrishnan, Oleksandr Voznyy:
  Strain data augmentation enables machine learning of inorganic crystal geometry optimization. 100663
• 
  Hao-Dong Xu, Johnathan Jia, Hyun-Hwan Jeong, Zhongming Zhao:
  Deep learning for detecting and elucidating human T-cell leukemia virus type 1 integration in the human genome. 100674

Review

• 
  Jenna C. Fromer, Connor W. Coley:
  Computer-aided multi-objective optimization in small molecule discovery. 100678

Perspective

• 
  Kelly Widdicks, Federica Lucivero, Gabrielle Samuel, Lucas Somavilla Croxatto, Marcia Tavares Smith, Carolyn Ten Holter, Mike Berners-Lee, Gordon S. Blair, Marina Jirotka, Bran Knowles, Steven Sorrell, Miriam Börjesson Rivera, Caroline Cook, Vlad C. Coroama, Timothy J. Foxon, Jeffrey Hardy, Lorenz M. Hilty, Simon Hinterholzer, Birgit Penzenstadler:
  Systems thinking and efficiency under emissions constraints: Addressing rebound effects in digital innovation and policy. 100679

Articles

• 
  Yongheng Wang, Weidi Zhang, Hoyin Yip, Chuyuan Qu, Hongru Hu, Xiaotie Chen, Teresa Lee, Xi Yang, Bingjun Yang, Priyadarsini Kumar, Su Yeon Lee, Javier J. Casimiro, Jiawei Zhang, Aijun Wang, Kit S. Lam:
  SIC50: Determining drug inhibitory concentrations using a vision transformer and an optimized Sobel operator. 100686
• 
  Chenxi Sun, Hongyan Li, Moxian Song, Derun Cai, Baofeng Zhang, Shenda Hong:
  Continuous diagnosis and prognosis by controlling the update process of deep neural networks. 100687

Descriptor

• 
  Daisuke Komura, Takumi Onoyama, Koki Shinbo, Hiroto Odaka, Minako Hayakawa, Mieko Ochi, Ranny Rahaningrum Herdiantoputri, Haruya Endo, Hiroto Katoh, Tohru Ikeda, Tetsuo Ushiku, Shumpei Ishikawa:
  Restaining-based annotation for cancer histology segmentation to overcome annotation-related limitations among pathologists. 100688
• 
  Andrew L. Hufton:
  Staying the course. 100690

Opinion

• 
  Leandro A Bugnon, Emilio Fenoy, Alejandro A. Edera, Jonathan Raad, Georgina Stegmayer, Diego H. Milone:
  Transfer learning: The key to functionally annotate the protein universe. 100691

Volume 4, Number 3, March 2023

Articles

• 
  Sohrab Ferdowsi, Julien Knafou, Nikolay Borissov, David Vicente Alvarez, Rahul Mishra, Poorya Amini, Douglas Teodoro:
  Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study. 100689
• 
  Markus J. Buehler:
  Unsupervised cross-domain translation via deep learning and adversarial attention neural networks and application to music-inspired protein designs. 100692

Opinions

• 
  Brent A. Anders:
  Is using ChatGPT cheating, plagiarism, both, neither, or forward thinking? 100694

Articles

• 
  Jinyu Fan, Yi Zeng:
  Challenging deep learning models with image distortion based on the abutting grating illusion. 100695
• 
  Wanyun Zhou, Yufei Liu, Yingxin Li, Siqi Kong, Weilin Wang, Boyun Ding, Jiyun Han, Chaozhou Mou, Xin Gao, Juntao Liu:
  TriNet: A tri-fusion neural network for the prediction of anticancer and antimicrobial peptides. 100702
• 
  Jianfei Yang, Xinyan Chen, Han Zou, Chris Xiaoxuan Lu, Dazhuo Wang, Sumei Sun, Lihua Xie:
  SenseFi: A library and benchmark on deep-learning-empowered WiFi human sensing. 100703
• 
  Yongtao Liu, Anna N. Morozovska, Eugene A. Eliseev, Kyle P. Kelley, Rama K. Vasudevan, Maxim A. Ziatdinov, Sergei V. Kalinin:
  Autonomous scanning probe microscopy with hypothesis learning: Exploring the physics of domain switching in ferroelectric materials. 100704
• 
  Felix M. Weidner, Julian D. Schwab, Sabine Wölk, Felix Rupprecht, Nensi Ikonomi, Silke D. Werle, Steve Hoffmann, Michael Kühl, Hans A. Kestler:
  Leveraging quantum computing for dynamic analyses of logical networks in systems biology. 100705

Opinions

• 
  Faisal R. Elali, Leena N. Rachid:
  AI-generated research paper fabrication and plagiarism in the scientific community. 100706
• 
  Jianfei Yang, Xinyan Chen:
  Toward ubiquitous sensing: Researchers turn WiFi signals into human activity patterns. 100707

Volume 4, Number 4, April 2023

Articles

• 
  Alyssa Wilson, Mehrtash Babadi:
  SynapseCLR: Uncovering features of synapses in primary visual cortex through contrastive representation learning. 100693
• 
  Sahand Karimi-Arpanahi, S. Ali Pourmousavi, Nariman Mahdavi:
  Quantifying the predictability of renewable energy data for improving power systems decision-making. 100708
• 
  Peiying Li, Yongchang Liu, Jiafeng Zhou, Shikui Tu, Bing Zhao, Jieqing Wan, Yunjun Yang, Lei Xu:
  A deep-learning method for the end-to-end prediction of intracranial aneurysm rupture risk. 100709

Perspective

• 
  Sahil Sandhu, Mark P. Sendak, William Ratliff, William Knechtle, William J. Fulkerson, Suresh Balu:
  Accelerating health system innovation: principles and practices from the Duke Institute for Health Innovation. 100710

Articles

• 
  Jianjun Shen, Siyi Lu, Ruize Qu, Hao Zhao, Li Zhang, An Chang, Yu Zhang, Wei Fu, Zhipeng Zhang:
  A boundary-guided transformer for measuring distance from rectal tumor to anal verge on magnetic resonance images. 100711

Review

• 
  Robert J. Jirsaraie, Aaron J. Gorelik, Martins M. Gatavins, Denis A. Engemann, Ryan Bogdan, Deanna M. Barch, Aristeidis Sotiras:
  A systematic review of multimodal brain age studies: Uncovering a divergence between model accuracy and utility. 100712

Articles

• 
  Fang Wu, Nicolas Courty, Shuting Jin, Stan Z. Li:
  Improving molecular representation learning with metric learning-enhanced optimal transport. 100714
• 
  An Chen, Simin Ye, Zhilong Wang, Yanqiang Han, Junfei Cai, Jin-Jin Li:
  Machine-learning-assisted rational design of 2D doped tellurene for fin field-effect transistor devices. 100722
• 
  Sam Preston, Mu Wei, Rajesh Rao, Robert Tinn, Naoto Usuyama, Michael Lucas, Yu Gu, Roshanthi Weerasinghe, Soohee Lee, Brian Piening, Paul Tittel, Naveen Valluri, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
  Toward structuring real-world data: Deep learning for extracting oncology information from clinical text with patient-level supervision. 100726
• 
  Robert Tinn, Hao Cheng, Yu Gu, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon:
  Fine-tuning large neural language models for biomedical natural language processing. 100729
• 
  Andrew L. Hufton:
  No artificial intelligence authors, for now. 100731

Opinion

• 
  Eric Perakslis, Stuart J. Knechtle, Brian McCourt, Raymond Lynch, Brianna L. Doby:
  Doing it right: Caring for and protecting patient information for US organ donors and transplant recipients. 100734

Volume 4, Number 5, May 2023

Descriptor

• 
  Ariel B. Carmeli, Laura Meloney, Barbara E. Bierer:
  Data visualization explorer: A tool for participant representation in pivotal trials of FDA-approved medicinal products. 100713

Articles

• 
  Rachel Woods-Robinson, Matthew K. Horton, Kristin A. Persson:
  A method to computationally screen for tunable properties of crystalline alloys. 100723
• 
  Jialin Liu, Weihe Liu, Cheuk Lun Chow, Denvid Lau:
  Mechanical improvement of boron nitride nanosheet-reinforced cement paste by multiscale modeling. 100724
• 
  Umair Khan, Sonja Koivukoski, Mira Valkonen, Leena Latonen, Pekka Ruusuvuori:
  The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibility. 100725
• 
  Dongqiao Xiang, Jiyang Qi, Yiqing Wen, Hui Zhao, Xiaolin Zhang, Jia Qin, Xiaomeng Ma, Yaguang Ren, Hongyao Hu, Wenyu Liu, Fan Yang, Huangxuan Zhao, Xinggang Wang, Chuansheng Zheng:
  ADSeg: A flap-attention-based deep learning approach for aortic dissection segmentation. 100727
• 
  Amy Ford, Frauke Breitgoff, Miriam Pasquini, Amanda MacKenzie, Stuart McElroy, Steve Baker, Patrizia Abrusci, Simon Varzandeh, Louise Bird, Angeline Gavard, David Damerell, Martin Redhead:
  Application of particle swarm optimization to understand the mechanism of action of allosteric inhibitors of the enzyme HSD17β13. 100733
• 
  Filip Mandys, Mona Chitnis, S. Ravi P. Silva:
  Levelized cost estimates of solar photovoltaic electricity in the United Kingdom until 2035. 100735

Perspective

• 
  Juanita Mathews, Alan (Jaelyn) Chang, Liam Devlin, Michael Levin:
  Cellular signaling pathways as plastic, proto-cognitive systems: Implications for biomedicine. 100737

Opinions

• 
  Filip Mandys, Mona Chitnis, S. Ravi P. Silva:
  Response to "Low cost, uncertain value: Why cheap PV may still not become UK's main power source". 100753
• 
  Claude Klöckl, Sebastian Wehrle, Johannes Schmidt:
  Low cost, uncertain value: Why cheap PV may still not become UK's main power source. 100754
• 
  Juan Espinoza Salomon:
  Bringing FAIRness to FDA data through visualization. 100755

Volume 4, Number 6, June 2023

Descriptors

• 
  Jorge Augusto Hongo, Giovanni Marques de Castro, Alison Pelri Albuquerque Menezes, Agnello César Rios Picorelli, Thieres Tayroni Martins da Silva, Eddie Luidy Imada, Luigi Marchionni, Luiz-Eduardo Del-Bem, Anderson Vieira Chaves, Gabriel Magno de Freitas Almeida, Felipe Campelo, Francisco Pereira Lobo:
  CALANGO: A phylogeny-aware comparative genomics tool for discovering quantitative genotype-phenotype associations across species. 100728

Articles

• 
  Binghan Cui, Han Wang, Renlong Li, Lizhi Xiang, Jiannan Du, Huaian Zhao, Sai Li, Xinyue Zhao, Geping Yin, Xinqun Cheng, Yulin Ma, Hua Huo, Pengjian Zuo, Guokang Han, Chunyu Du:
  Long-sequence voltage series forecasting for internal short circuit early detection of lithium-ion batteries. 100732
• 
  JungHo Kong, Jinho Kim, Donghyo Kim, Kwanghwan Lee, Juhun Lee, Seong Kyu Han, Inhae Kim, Seongsu Lim, Minhyuk Park, Seungho Shin, Woo Yong Lee, Seong Hyeon Yun, Hee Cheol Kim, Hye Kyung Hong, Yong Beom Cho, Donghyun Park, Sanguk Kim:
  Information about immune cell proportions and tumor stage improves the prediction of recurrence in patients with colorectal cancer. 100736
• 
  Timothée Poisot, Marie-Andrée Ouellet, Nardus Mollentze, Maxwell J. Farrell, Daniel J. Becker, Liam Brierley, Gregory F. Albery, Rory J. Gibb, Stephanie N. Seifert, Colin J. Carlson:
  Network embedding unveils the hidden interactions in the mammalian virome. 100738
• 
  Armin Kekic, Jonas Dehning, Luigi Gresele, Julius von Kügelgen, Viola Priesemann, Bernhard Schölkopf:
  Evaluating vaccine allocation strategies using simulation-assisted causal modeling. 100739

Descriptors

• 
  Anant Dadu, Vipul Satone, Rachneet Kaur, Mathew J. Koretsky, Hirotaka Iwaki, Yue A. Qi, Daniel M. Ramos, Brian B. Avants, Jacob Hesterman, Roger Gunn, Mark R. Cookson, Michael E. Ward, Andrew B. Singleton, Roy H. Campbell, Mike A. Nalls, Faraz Faghri:
  Application of Aligned-UMAP to longitudinal biomedical studies. 100741

Articles

• 
  Le Trung Thanh, Karim Abed-Meraim, Nguyen Linh Trung, Adel Hafiane:
  Tracking online low-rank approximations of higher-order incomplete streaming tensors. 100759

Perspective

• 
  Tim Räz:
  Methods for identifying emergent concepts in deep neural networks. 100761
• 
  Giovanni Marques de Castro, Felipe Campelo, Francisco Pereira Lobo:
  Why are some plants taller? Researchers on the unveiling of genetic variation associated with complex quantitative phenotypes. 100774

Volume 4, Number 7, July 2023

Articles

• 
  Yingji Xia, Maosi Geng, Yong Chen, Sudan Sun, Chenlei Liao, Zheng Zhu, Zhihui Li, Washington Yotto Ochieng, Panagiotis Angeloudis, Mireille Elhajj, Lei Zhang, Zhenyu Zeng, Bing Zhang, Ziyou Gao, Xiqun Michael Chen:
  Understanding common human driving semantics for autonomous vehicles. 100730
• 
  Shan Suthaharan:
  Modeling and simulation of a Tamil language encoder for advanced encryption technologies. 100740
• 
  Matthew Rosenblatt, Raimundo X. Rodriguez, Margaret L. Westwater, Wei Dai, Corey Horien, Abigail S. Greene, R. Todd Constable, Stephanie Noble, Dustin Scheinost:
  Connectome-based machine learning models are vulnerable to subtle data manipulations. 100756

Descriptors

• 
  Nile Dixon, Marcelle Goggins, Ethan Ho, Mark Howison, Joe Long, Emma Northcott, Karen Shen, Carrie Yeats:
  Occupational models from 42 million unstructured job postings. 100757

Articles

• 
  Joshua G. Burkhart, Guanming Wu, Xubo Song, Francesco Raimondi, Shannon K. McWeeney, Melissa H. Wong, Youping Deng:
  Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease. 100758
• 
  Shuping Li, Can Cui, Jing Meng, Yuan Li, Yuli Shan, Weichen Zhao, Priti Parikh, Jiawei Yao, Dabo Guan:
  The heterogeneous driving forces behind carbon emissions change in 30 selective emerging economies. 100760
• 
  Chen Tsfaty, Michael Fire:
  Malicious source code detection using a translation model. 100773
• 
  Achmed Edianto, Gregory Trencher, Niccolò Manych, Kazuyo Matsubae:
  Forecasting coal power plant retirement ages and lock-in with random forest regression. 100776

Opinion

• 
  Weixin Liang, Mert Yüksekgönül, Yining Mao, Eric Wu, James Zou:
  GPT detectors are biased against non-native English writers. 100779

Review

• 
  Valerie Chen, Umang Bhatt, Hoda Heidari, Adrian Weller, Ameet Talwalkar:
  Perspectives on incorporating expert feedback into model updates. 100780

Perspective

• 
  Eike Petersen, Sune Hannibal Holm, Melanie Ganz, Aasa Feragen:
  The path toward equal performance in medical machine learning. 100790

Descriptors

• 
  Zhangzhi Xue, Tiansheng Zhu, Fangfei Zhang, Cheng Zhang, Nan Xiang, Liujia Qian, Xiao Yi, Yaoting Sun, Wei Liu, Xue Cai, Linyan Wang, Xizhe Dai, Liang Yue, Lu Li, Thang Viet Pham, Sander R. Piersma, Qi Xiao, Meng Luo, Cong Lu, Jiang Zhu, Yongfu Zhao, Guangzhi Wang, Junhong Xiao, Tong Liu, Zhiyu Liu, Yi He, Qijun Wu, Tingting Gong, Jianqin Zhu, Zhiguo Zheng, Juan Ye, Yan Li, Connie R. Jimenez, Jun A, Tiannan Guo:
  DPHL v.2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins. 100792

People of Data

• 
  Daisuke Komura, Shumpei Ishikawa:
  Meet the authors: Daisuke Komura and Shumpei Ishikawa. 100794

Preview

• 
  Jahna Otterbacher:
  Why technical solutions for detecting AI-generated content in research and education are insufficient. 100796
• 
  Wanying Wang, Ge Wang, Vukosi Marivate, Andrew L. Hufton:
  On the transparency of large AI models. 100797

Volume 4, Number 8, August 2023

Articles

• 
  Zhuoya Zhao, Feifei Zhao, Yuxuan Zhao, Yi Zeng, Yinqian Sun:
  A brain-inspired theory of mind spiking neural network improves multi-agent cooperation and competition. 100775
• 
  Qasem Al-Tashi, Maliazurina B. Saad, Ajay Sheshadri, Carol C. Wu, Joe Y. Chang, Bissan Al-Lazikani, Christopher Gibbons, Natalie I. Vokes, Jianjun Zhang, J. Jack Lee, John V. Heymach, David A. Jaffray, Seyedali Mirjalili, Jia Wu:
  SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers. 100777
• 
  Victorine P. Muse, Alejandro Aguayo-Orozco, Sedrah B. Balaganeshan, Søren Brunak:
  Population-wide analysis of hospital laboratory tests to assess seasonal variation and temporal reference interval modification. 100778

Review

• 
  Andreas Holzinger, Anna Saranti, Alessa Angerschmid, Bettina Finzel, Ute Schmid, Heimo Müller:
  Toward human-level concept learning: Pattern benchmarking for AI algorithms. 100788

Articles

• 
  Yi Zeng, Dongcheng Zhao, Feifei Zhao, Guobin Shen, Yiting Dong, Enmeng Lu, Qian Zhang, Yinqian Sun, Qian Liang, Yuxuan Zhao, Zhuoya Zhao, Hongjian Fang, Yuwei Wang, Yang Li, Xin Liu, Chengcheng Du, Qingqun Kong, Zizhe Ruan, Weida Bi:
  BrainCog: A spiking neural network based, brain-inspired cognitive intelligence engine for brain-inspired AI and brain simulation. 100789
• 
  Maulik K. Nariya, Caitlin E. Mills, Peter K. Sorger, Artem Sokolov:
  Paired evaluation of machine-learning models characterizes effects of confounders and outliers. 100791
• 
  Rossin Erbe, Genevieve L. Stein-O'Brien, Elana J. Fertig:
  Transcriptomic forecasting with neural ordinary differential equations. 100793
• 
  Hang Xu, Xianfu Yi, Xutong Fan, Chengyue Wu, Wei Wang, Xinlei Chu, Shijie Zhang, Xiaobao Dong, Zhao Wang, Jianhua Wang, Yao Zhou, Ke Zhao, Hongcheng Yao, Nan Zheng, Junwen Wang, Yupeng Chen, Dariusz Plewczynski, Pak Chung Sham, Kexin Chen, Dandan Huang, Mulin Jun Li:
  Inferring CTCF-binding patterns and anchored loops across human tissues and cell types. 100798
• 
  Salvatore Loguercio, Ben C. Calverley, Chao Wang, Daniel B. Shak, Pei Zhao, Shuhong Sun, G. R. Scott Budinger, William E. Balch:
  Understanding the host-pathogen evolutionary balance through Gaussian process modeling of SARS-CoV-2. 100800

Descriptor

• 
  Yichen Wang, Irzam Sarfraz, Nida Pervaiz, Rui Hong, Yusuke Koga, Vidya Akavoor, Xinyun Cao, Salam Alabdullatif, Syed Ali Zaib, Zhe Wang, Frederick Jansen, Masanao Yajima, W. Evan Johnson, Joshua D. Campbell:
  Interactive analysis of single-cell data using flexible workflows with SCTK2. 100814

Articles

• 
  Omar Kana, Rance Nault, David Filipovic, Daniel Marri, Timothy R. Zacharewski, Sudin Bhattacharya:
  Generative modeling of single-cell gene expression for dose-dependent chemical perturbations. 100817

Perspective

• 
  Eric Schwitzgebel:
  AI systems must not confuse users about their sentience or moral status. 100818

Opinion

• 
  Marie Piraud, Andrés Camero, Markus Götz, Stefan Kesselheim, Peter Steinbach, Tobias Weigel:
  Providing AI expertise as an infrastructure in academia. 100819

Articles

• 
  Kathleen Siminyu, Jade Z. Abbott, Kólá Túbosún, Aremu Anuoluwapo, Blessing K. Sibanda, Kofi Yeboah, David Ifeoluwa Adelani, Masabata Mokgesi-Selinga, Frederick R. Apina, Angela Thandizwe Mthembu, Arshath Ramkilowan, Babatunde Oladimeji:
  Consultative engagement of stakeholders toward a roadmap for African language technologies. 100820
• 
  Wanying Wang:
  Different natural languages, equal importance. 100821

Corrections

• 
  Tomo Lazovich, Luca Belli, Aaron Gonzales, Amanda Bower, Uthaipon Tantipongpipat, Kristian Lum, Ferenc Huszár, Rumman Chowdhury:
  Measuring disparate outcomes of content recommendation algorithms with distributional inequality metrics. 100822
• 
  Rachel Woods-Robinson, Matthew K. Horton, Kristin A. Persson:
  A method to computationally screen for tunable properties of crystalline alloys. 100823
• 
  Maulik K. Nariya, Caitlin E. Mills, Peter K. Sorger, Artem Sokolov:
  Correction: Paired evaluation of machine-learning models characterizes effects of confounders and outliers. 100824
• 
  Waheed Miran, Wenyuan Huang, Xizi Long, Gaku Imamura, Akihiro Okamoto:
  Multivariate landscapes constructed by Bayesian estimation over five hundred microbial electrochemical time profiles. 100827

Volume 4, Number 9, September 2023

Articles

• 
  Lianting Hu, Shuai Huang, Huazhang Liu, Yunmei Du, Junfei Zhao, Xiaoting Peng, Dantong Li, Xuanhui Chen, Huan Yang, Lingcong Kong, Jiajie Tang, Xin Li, Heng Liang, Huiying Liang:
  A cardiologist-like computer-aided interpretation framework to improve arrhythmia diagnosis from imbalanced training datasets. 100795
• 
  Rasha Atwi, Nav Nidhi Rajput:
  Guiding maps of solvents for lithium-sulfur batteries via a computational data-driven approach. 100799
• 
  Feiyang Yu, Mark Endo, Rayan Krishnan, Ian Pan, Andy Tsai, Eduardo Pontes Reis, Eduardo Kaiser Ururahy Nunes Fonseca, Henrique Min Ho Lee, Zahra Shakeri Hossein Abad, Andrew Y. Ng, Curtis P. Langlotz, Vasantha Kumar Venugopal, Pranav Rajpurkar:
  Evaluating progress in automatic chest X-ray radiology report generation. 100802
• 
  Sayash Kapoor, Arvind Narayanan:
  Leakage and the reproducibility crisis in machine-learning-based science. 100804
• 
  Akash Pandey, Elaine Liu, Jacob Graham, Wei Chen, Sinan Keten:
  B-factor prediction in proteins using a sequence-based deep learning model. 100805
• 
  Ruicun Liu, Tuoyu Liu, Tingting Dan, Shan Yang, Yanbing Li, Boyu Luo, Yingtan Zhuang, Xinyue Fan, Xianchao Zhang, Hongmin Cai, Yue Teng:
  AIDMAN: An AI-based object detection system for malaria diagnosis from smartphone thin-blood-smear images. 100806
• 
  Jiaxiang Liu, Jin Hao, Hangzheng Lin, Wei Pan, Jianfei Yang, Yang Feng, Gaoang Wang, Jin Li, Zuolin Jin, Zhihe Zhao, Zuozhu Liu:
  Deep learning-enabled 3D multimodal fusion of cone-beam CT and intraoral mesh scans for clinically applicable tooth-bone reconstruction. 100825
• 
  Jiadong Zhang, Zhiming Cui, Zhenwei Shi, Yingjia Jiang, Zhiliang Zhang, Xiaoting Dai, Zhenlu Yang, Yuning Gu, Lei Zhou, Chu Han, Xiaomei Huang, Chenglu Ke, Suyun Li, Zeyan Xu, Fei Gao, Luping Zhou, Rongpin Wang, Jun Liu, Jiayin Zhang, Zhongxiang Ding, Kun Sun, Zhenhui Li, Zaiyi Liu, Dinggang Shen:
  A robust and efficient AI assistant for breast tumor segmentation from DCE-MRI via a spatial-temporal framework. 100826
• 
  Seungyeon Lee, Changchang Yin, Ping Zhang:
  Stable clinical risk prediction against distribution shift in electronic health records. 100828
• 
  Sepideh Babaei, Jonathan Christ, Vivek Sehra, Ahmad Makky, Mohammed Zidane, Kilian Wistuba-Hamprecht, Christian M. Schürch, Manfred Claassen:
  S³-CIMA: Supervised spatial single-cell image analysis for identifying disease-associated cell-type compositions in tissue. 100829
• 
  Luca Malinverno, Vesna Barros, Francesco Ghisoni, Giovanni Visonà, Roman Kern, Philip J. Nickel, Barbara Elvira Ventura, Ilija Simic, Sarah Stryeck, Francesca Manni, César Ferri, Claire Jean-Quartier, Laura Genga, Gabriele Beate Schweikert, Mario Lovric, Michal Rosen-Zvi:
  A historical perspective of biomedical explainable AI research. 100830

Correction

• 
  Yang Liu, Haiyou Huang, Jie Yuan, Yan Zhang, Hongyuan Feng, Ning Chen, Yang Li, Jiao Teng, Kui Jin, Dezhen Xue, Yanjing Su:
  Upper limit of the transition temperature of superconducting materials. 100841

Volume 4, Number 10, October 2023

Articles

• 
  Bo Lu, Yue Sun, Lijie Fan, Xuejiao Ma, Hongbo Duan:
  Evolutionary characteristics of global offshore carbon emissions network and responsibility allocation of emissions reduction. 100801
• 
  Vadim Korolev, Pavel V. Protsenko:
  Accurate, interpretable predictions of materials properties within transformer language models. 100803
• 
  Chenyan Wu, Dolzodmaa Davaasuren, Tal Shafir, Rachelle Tsachor, James Z. Wang:
  Bodily expressed emotion understanding through integrating Laban movement analysis. 100816
• 
  Gehua Ma, Rui Yan, Huajin Tang:
  Exploiting noise as a resource for computation and learning in spiking neural networks. 100831

Descriptor

• 
  Min Gao, Zheng Li, Ruichen Li, Chenhao Cui, Xinyuan Chen, Bodian Ye, Yupeng Li, Weiwei Gu, Qingyuan Gong, Xin Wang, Yang Chen:
  EasyGraph: A multifunctional, cross-platform, and effective library for interdisciplinary network analysis. 100839

Articles

• 
  Md Tauhidul Islam, Lei Xing:
  Leveraging cell-cell similarity for high-performance spatial and temporal cellular mappings from gene expression data. 100840

Perspective

• 
  David Manheim:
  Building less-flawed metrics: Understanding and creating better measurement and incentive systems. 100842

Review

• 
  Aapo Hyvärinen, Ilyes Khemakhem, Hiroshi Morioka:
  Nonlinear independent component analysis for principled disentanglement in unsupervised deep learning. 100844

Articles

• 
  Phillip Navarro, Karim G. Oweiss:
  Compressive sensing of functional connectivity maps from patterned optogenetic stimulation of neuronal ensembles. 100845
• 
  Nicholas Kluge Corrêa, Camila Galvão, James William Santos:
  Meet the authors: Nicholas Kluge Corrêa and Camila Trindade Galvão. 100854
• 
  Nicholas Kluge Corrêa, Camila Galvão, James William Santos, Carolina Del Pino, Edson Pontes Pinto, Camila Barbosa, Diogo Massmann, Rodrigo Mambrini, Luiza Galvão, Edmund Terem, Nythamar de Oliveira:
  Worldwide AI ethics: A review of 200 guidelines and recommendations for AI governance. 100857

Volume 4, Number 11, November 2023

Articles

• 
  Eric Schwenker, Weixin Jiang, Trevor Spreadbury, Nicola J. Ferrier, Oliver Cossairt, Maria K. Y. Chan:
  EXSCLAIM!: Harnessing materials science literature for self-labeled microscopy datasets. 100843

Descriptor

• 
  Robert Hermod Olson, Noah Cohen Kalafut, Daifeng Wang:
  MANGEM: A web app for multimodal analysis of neuronal gene expression, electrophysiology, and morphology. 100847

Articles

• 
  Maria Reva, Christian Rössert, Alexis Arnaudon, Tanguy Damart, Darshan Mandge, Anil Tuncel, Srikanth Ramaswamy, Henry Markram, Werner Van Geit:
  A universal workflow for creation, validation, and generalization of detailed neuronal models. 100855
• 
  Bruno Casella, Walter Riviera, Marco Aldinucci, Gloria Menegaz:
  MERGE: A model for multi-input biomedical federated learning. 100856
• 
  Yongtao Liu, Maxim A. Ziatdinov, Rama K. Vasudevan, Sergei V. Kalinin:
  Explainability and human intervention in autonomous scanning probe microscopy. 100858
• 
  Kamila Zdybal, Alessandro Parente, James C. Sutherland:
  Improving reduced-order models through nonlinear decoding of projection-dependent outputs. 100859

Opinion

• 
  Brandeis Marshall:
  No legal personhood for AI. 100861

Articles

• 
  Yong Chen, Haoge Xu, Xiqun Michael Chen, Ziyou Gao:
  A multi-scale unified model of human mobility in urban agglomerations. 100862

Review

• 
  Xiaoning Qian, Byung-Jun Yoon, Raymundo Arróyave, Xiaofeng Qian, Edward R. Dougherty:
  Knowledge-driven learning, optimization, and experimental design under uncertainty for materials discovery. 100863

Perspective

• 
  Melissa D. McCradden, Shalmali Joshi, James A. Anderson, Alex John London:
  A normative framework for artificial intelligence as a sociotechnical system in healthcare. 100864

Articles

• 
  Maurice Gerczuk, Andreas Triantafyllopoulos, Shahin Amiriparian, Alexander Kathan, Jonathan Bauer, Matthias Berking, Björn W. Schuller:
  Zero-shot personalization of speech foundation models for depressed mood monitoring. 100873
• 
  Hyun-Myung Woo, Xiaoning Qian, Li Tan, Shantenu Jha, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon:
  Optimal decision-making in high-throughput virtual screening pipelines. 100875
• 
  Francis J. Alexander, Meifeng Lin, Xiaoning Qian, Byung-Jun Yoon:
  Accelerating scientific discoveries through data-driven innovations. 100876

People of Data

• 
  Yong Chen, Xiqun Michael Chen, Ziyou Gao:
  Meet the authors: Yong Chen, Xiqun (Michael) Chen, and Ziyou Gao. 100877

Volume 4, Number 12, December 2023

Articles

• 
  Weilin Yuan, Yusuke Hibi, Ryo Tamura, Masato Sumita, Yasuyuki Nakamura, Masanobu Naito, Koji Tsuda:
  Revealing factors influencing polymer degradation with rank-based machine learning. 100846
• 
  Da Wu, Jingye Yang, Mian Umair Ahsan, Kai Wang:
  Classification of integers based on residue classes via modern deep learning algorithms. 100860
• 
  Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington:
  Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches. 100865

Review

• 
  Oliver Y. Chén, Julien S. Bodelet, Raúl G. Saraiva, Huy Phan, Junrui Di, Guy Nagels, Tom Schwantje, Hengyi Cao, Jiangtao Gou, Jenna M. Reinen, Bin Xiong, Bangdong Zhi, Xiaojun Wang, Maarten De Vos:
  The roles, challenges, and merits of the p value. 100878

Descriptor

• 
  Maria Masotti, Nathaniel Osher, Joel Eliason, Arvind Rao, Veerabhadran Baladandayuthapani:
  DIMPLE: An R package to quantify, visualize, and model spatial cellular interactions from multiplex imaging with distance matrices. 100879

Articles

• 
  Yuxuan Zhao, Enmeng Lu, Yi Zeng:
  Brain-inspired bodily self-perception model for robot rubber hand illusion. 100888
• 
  Vijendra Ramlall, Undina Gisladottir, Jenna Kefeli, Yutaro Tanaka, Benjamin L. May, Nicholas P. Tatonetti:
  Using machine learning probabilities to identify effects of COVID-19. 100889
• 
  Takumi Yoshida, Hiroyuki Hanada, Kazuya Nakagawa, Kouichi Taji, Koji Tsuda, Ichiro Takeuchi:
  Efficient model selection for predictive pattern mining model by safe pattern pruning. 100890
• 
  Yuxuan Zhao, Enmeng Lu, Yi Zeng:
  Meet the authors: Yuxuan Zhao, Enmeng Lu, and Yi Zeng. 100891
• 
  Liantao Ma, Chaohe Zhang, Junyi Gao, Xianfeng Jiao, Zhihao Yu, Yinghao Zhu, Tianlong Wang, Xinyu Ma, Yasha Wang, Wen Tang, Xinju Zhao, Wenjie Ruan, Tao Wang:
  Mortality prediction with adaptive feature importance recalibration for peritoneal dialysis patients. 100892