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W. Evan Johnson
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- affiliation: Boston University, School of Public Health, Department of Biostatistics, MA, USA
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2020 – today
- 2023
- [j11]Dakota Y. Hawkins, Daniel T. Zuch
, James Huth, Nahomie Rodriguez-Sastre, Kelley R. McCutcheon
ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes. Bioinform. 39(5) (2023) - [j10]Yichen Wang
Interactive analysis of single-cell data using flexible workflows with SCTK2. Patterns 4(8): 100814 (2023) - 2021
- [j9]Yuqing Zhang, Prasad Patil, W. Evan Johnson
Robustifying genomic classifiers to batch effects via ensemble learning. Bioinform. 37(11): 1521-1527 (2021)
2010 – 2019
- 2019
- [j8]Zhe Wang
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data. BMC Bioinform. 20(1): 222:1-222:9 (2019) - 2018
- [j7]Yuqing Zhang, David F. Jenkins
Alternative empirical Bayes models for adjusting for batch effects in genomic studies. BMC Bioinform. 19(1): 262:1-262:15 (2018) - 2016
- [j6]Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush
BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinform. 32(24): 3836-3838 (2016) - 2015
- [j5]Ying Shen, Mumtahena Rahman
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinform. 31(11): 1745-1753 (2015) - [j4]Mumtahena Rahman
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinform. 31(22): 3666-3672 (2015) - 2013
- [j3]Changjin Hong, Nathan L. Clement, Spencer Clement, Saher Sue Hammoud, Douglas T. Carrell, Bradley R. Cairns, Quinn Snell, Mark J. Clement, William Evan Johnson
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. BMC Bioinform. 14: 337 (2013) - 2012
- [j2]Jeffrey T. Leek, W. Evan Johnson
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28(6): 882-883 (2012) - [c2]Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson:
Parallel Pair-HMM SNP Detection. IPDPS Workshops 2012: 675-683 - 2011
- [c1]Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson:
Parallel Mapping Approaches for GNUMAP. IPDPS Workshops 2011: 435-443 - 2010
- [j1]Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinform. 26(1): 38-45 (2010)
Coauthor Index
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