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Journal of Integrative Bioinformatics, Volume 3
Volume 3, Number 1, 2006
- Heike Pospisil:
Identification of embryo specific human isoforms using a database of predicted alternative splice forms. - Björn H. Junker, Dirk Koschützki, Falk Schreiber:
Kinetic Modelling with the Systems Biology Modelling Environment SyBME. - Kristian Rother, Mathias Dunkel, Elke Michalsky, Silke Trißl, Andrean Goede, Ulf Leser, Robert Preissner:
A structural keystone for drug design. - Ashok Reddy Dinasarapu
, B. V. L. S. Prasad, Chanchal K. Mitra:
Functional classification of transcription factor binding sites: information content as a metric. - Paolo Romano, Guglielmo Bertolini, Flavio De Paoli, M. Fattore, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Ivan Porro, Silvia Scaglione, Luciano Milanesi:
Network integration of data and analysis of oncology interest. - Aruna Ranganath, K. C. Shet, Nagardone Vidyavathi:
3D image and graph based Computation of Protein Surface. - Mircea Andrecut, Stuart A. Kauffman:
Noise in Genetic Toggle Switch Models.
Volume 3, Number 2, 2006
- Jan Baumbach, Karina Brinkrolf, Tobias Wittkop, Andreas Tauch, Sven Rahmann:
CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes. - Sabah Khalid, Karl Fraser, Mohsin Khan, Ping Wang, Xiaohui Liu, Suling Li:
Analysing Microarray Data using the Multi-functional Immune Ontologiser. - Colin S. Gillespie
BASIS: an internet resource for network modelling. - Wolfgang Straßer, Doris Siegl, Kamil Önder, Johann W. Bauer:
InSilico Proteomics System: Integration and Application of Protein and Protein-Protein Interaction Data using Microsoft .NET. - Matthias Steinfath, Dirk Repsilber, Manuela Hische, Nicolas Schauer, Alisdair R. Fernie, Joachim Selbig:
Metabolite profiles as a reflection of physiological status -- a methodological validation. - Yvonne E. Pittelkow, Susan R. Wilson:
Modeling Microarray Data: Interpreting and communicating the biological results. - Enrico Capobianco:
Statistical Embedding in Complex Biosystems . - Selpi, Christopher H. Bryant
A First Step towards Learning which uORFs Regulate Gene Expression. - Michael P. H. Stumpf, Thomas Thorne
Multi-model inference of network properties from incomplete data. - Laura Elo
Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments. - Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof:
BN++ - A Biological Information System. - Emilie Guérin, Gwenaëlle Marquet, Julie Chabalier, Marie-Bérengère Troadec, Christiane Guguen-Guillouzo, Olivier Loréal, Anita Burgun, Fouzia Moussouni:
Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes. - Stuart L. Moodie, Anatoly A. Sorokin, Igor Goryanin
A Graphical Notation to describe the Logical Interactions of Biological Pathways. - Ricardo Martínez, Nicolas Pasquier, Claude Pasquier
Co-expressed gene group analysis (CGGA): An automatic tool for the interpretation of microarray experiments. - Vilda Purutçuoglu, Ernst Wit:
Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons of Simulations Results. - T. Charles Hodgman, Y. Ugartechea-Chirino, G. Tansley, I. Dryden:
The implications for Bioinformatics of integration across physical scales. - Daniele Apiletti, Giulia Bruno, Elisa Ficarra, Elena Baralis:
Data Cleaning and Semantic Improvement in Biological Databases. - Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje:
An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions. - Mikael Huss, Karin Nordström
Prediction of transcription factor binding to DNA using rule induction methods . - Joe Faith, Michael J. Brockway:
Targeted Projection Pursuit Tool for Gene Expression Visualisation. - Andreas Kaps, Konstantin Dyshlevoi, Klaus Heumann, Ralf Jost, Ioannis Kontodinas, Martin Wolff, Jean Hani:
The BioRS(TM) Integration and Retrieval System: An open system for distributed data integration. - B. Prins, Ralf Hofestädt:
MILAN - A medical information-system linking agents to metabolic networks. - James A. Casbon, Mansoor A. S. Saqi:
Functional diversity within protein superfamilies.
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