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Journal of Biomedical Informatics, Volume 39
Volume 39, Number 1, February 2006
- Randolph A. Miller, Arie Hasman, Charles Safran, Reinhold Haux, Alexa T. McCray, Torgny Groth, Edward H. Shortliffe
:
On exemplary scientific conduct regarding submission of manuscripts to biomedical informatics journals. 1-2
- Indra Neil Sarkar
Phylogenetics in the modern era. 3-5
- Robert DeSalle:
What's in a character? 6-17 - Aloysius J. Phillips:
Homology assessment and molecular sequence alignment. 18-33 - John J. Wiens
Missing data and the design of phylogenetic analyses. 34-42
- Griffin M. Weber
Representation in stochastic search for phylogenetic tree reconstruction. 43-50 - Carolin Kosiol, Lee Bofkin, Simon Whelan:
Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome. 51-61 - Michael A. Charleston, Susan L. Perkins
Traversing the tangle: Algorithms and applications for cophylogenetic studies. 62-71
- Mary G. Egan:
Support versus corroboration. 72-85 - Paul J. Planet:
Tree disagreement: Measuring and testing incongruence in phylogenies. 86-102
Volume 39, Number 2, April 2006
- Rita Noumeir:
Radiology interpretation process modeling. 103-114 - Xiaobo Zhou, Xinhua Cao, Zach Perlman, Stephen T. C. Wong:
A computerized cellular imaging system for high content analysis in Monastrol suppressor screens. 115-125 - Changwon Yoo
A control study to evaluate a computer-based microarray experiment design recommendation system for gene-regulation pathways discovery. 126-146 - Ming Chen
A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis. 147-159 - Maged N. Kamel Boulos
Using software agents to preserve individual health data confidentiality in micro-scale geographical analyses. 160-170 - Christian Baumgartner, Gábor Mátyás, Beat Steinmann, Martin Eberle, Jörg I. Stein, Daniela Baumgartner
A bioinformatics framework for genotype-phenotype correlation in humans with Marfan syndrome caused by FBN1 gene mutations. 171-183 - Mor Peleg
Interpreting procedures from descriptive guidelines. 184-195 - Wendy Webber Chapman
Inductive creation of an annotation schema for manually indexing clinical conditions from emergency department reports. 196-208 - Yugyung Lee, James Geller:
Semantic enrichment for medical ontologies. 209-226
- Hyunjin Shin, Mia K. Markey
A machine learning perspective on the development of clinical decision support systems utilizing mass spectra of blood samples. 227-248
Volume 39, Number 3, June 2006
- James J. Cimino
Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome Conference. 249-251
- Alexander C. Yu:
Methods in biomedical ontology. 252-266
- Alexa T. McCray:
Conceptualizing the world: Lessons from history. 267-273 - Ingvar Johansson:
Bioinformatics and biological reality. 274-287 - Barry Smith
From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies. 288-298 - James J. Cimino
In defense of the Desiderata. 299-306 - Anita Burgun
Desiderata for domain reference ontologies in biomedicine. 307-313 - Judith A. Blake
Beyond the data deluge: Data integration and bio-ontologies. 314-320 - Christiane Fellbaum, Udo Hahn, Barry Smith
Towards new information resources for public health - From WordNet to MedicalWordNet. 321-332 - Alan L. Rector, Jeremy Rogers, Thomas Bittner
Granularity, scale and collectivity: When size does and does not matter. 333-349 - Stefan Schulz, Anand Kumar, Thomas Bittner
Biomedical ontologies: What part-of is and isn't. 350-361 - Werner Ceusters
Strategies for referent tracking in electronic health records. 362-378
Volume 39, Number 4, August 2006
- Ghislain Bidaut
WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis. 379-388 - Omolola Ogunyemi
Methods for reasoning from geometry about anatomic structures injured by penetrating trauma. 389-400 - Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo
Knowledge guided analysis of microarray data. 401-411 - Mureen Allen, Leanne M. Currie, Suzanne Bakken, Vimla L. Patel, James J. Cimino
Heuristic evaluation of paper-based Web pages: A simplified inspection usability methodology. 412-423 - Li Zhou, Genevieve B. Melton
A temporal constraint structure for extracting temporal information from clinical narrative. 424-439 - Qiang Lu, Pei Hao
KDE Bioscience: Platform for bioinformatics analysis workflows. 440-450
- Michael E. Bales
Graph theoretic modeling of large-scale semantic networks. 451-464
Volume 39, Number 5, October 2006
- Timothy W. Bickmore, Toni Giorgino, Nancy L. Green, Rosalind W. Picard:
Special issue on dialog systems for health communication. 465-467
- Jeffrey P. Migneault
How to write health dialog for a talking computer. 468-481 - Martin Beveridge, John Fox:
Automatic generation of spoken dialogue from medical plans and ontologies. 482-499 - James F. Allen, George Ferguson, Nate Blaylock, Donna K. Byron, Nathanael Chambers, Myroslava O. Dzikovska, Lucian Galescu, Mary D. Swift:
Chester: Towards a personal medication advisor. 500-513 - Fiorella de Rosis, Nicole Novielli
User modeling and adaptation in health promotion dialogs with an animated character. 514-531 - Robert C. Hubal
Informed consent procedures: An experimental test using a virtual character in a dialog systems training application. 532-540 - Ronilda C. Lacson, Regina Barzilay, William J. Long:
Automatic analysis of medical dialogue in the home hemodialysis domain: Structure induction and summarization. 541-555
- Timothy W. Bickmore, Toni Giorgino:
Health dialog systems for patients and consumers. 556-571
Volume 39, Number 6, December 2006
- Silvia Alayón, José Ignacio Estévez Damas, José F. Sigut
An evolutionary Michigan recurrent fuzzy system for nuclei classification in cytological images using nuclear chromatin distribution. 573-588 - Stéphane M. Meystre
Natural language processing to extract medical problems from electronic clinical documents: Performance evaluation. 589-599 - Meliha Yetisgen-Yildiz, Wanda Pratt
Using statistical and knowledge-based approaches for literature-based discovery. 600-611 - Radwan E. Abdel-Aal, Mona R. E. Abdel-Halim
Improving the classification of multiple disorders with problem decomposition. 612-625 - Li Zhou, Ying Tao, James J. Cimino
Terminology model discovery using natural language processing and visualization techniques. 626-636 - Ilias Maglogiannis
Risk analysis of a patient monitoring system using Bayesian Network modeling. 637-647 - Jeffrey A. Linder, Alan F. Rose, Matvey B. Palchuk, Frank Y. Chang, Jeffrey L. Schnipper, Joseph C. Chan, Blackford Middleton
Decision support for acute problems: The role of the standardized patient in usability testing. 648-655 - Amy Berlin, Marco Sorani, Ida Sim:
A taxonomic description of computer-based clinical decision support systems. 656-667 - Quanzhi Li, Yi-fang Brook Wu:
Identifying important concepts from medical documents. 668-679 - Mollie R. Poynton, Anna M. McDaniel:
Classification of smoking cessation status with a backpropagation neural network. 680-686 - Ismail Abbas
Validation by simulation of a clinical trial model using the standardized mean and variance criteria. 687-696 - Genevieve B. Melton
Inter-patient distance metrics using SNOMED CT defining relationships. 697-705 - Hongwei Cai
A generic minimization random allocation and blinding system on web. 706-719
- Lily A. Gutnik
The role of emotion in decision-making: A cognitive neuroeconomic approach towards understanding sexual risk behavior. 720-736
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