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International Journal of Bioinformatics Research and Applications (IJBRA), Volume 4
Volume 4, Number 1, 2008
- Zhenqiu Liu, Dechang Chen, Jianjun Paul Tian:
Classification of proteomic data with multiclass Logistic Partial Least Squares algorithm. 1-10 - Suely Oliveira
, Sang-Cheol Seok:
A matrix-based multilevel approach to identify functional protein modules. 11-27 - Imad Rahal, Riad Rahhal
CARIBIAM: Constrained Association Rules using Interactive Biological IncrementAl Mining. 28-48 - Yong Li, Xiujuan Chen, Saeid Belkasim, Yi Pan:
High performance bio-image database retrieval using MPI. 49-63 - Deyu Zhou, Yulan He
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model. 64-80 - Marcel H. Schulz
The generalised k-Truncated Suffix Tree for time-and space-efficient searches in multiple DNA or protein sequences. 81-95 - Jianxin Wang, De Yang:
UPNT: Uniform Projection and Neighbourhood Thresholding method for motif discovery. 96-106 - Patricia Buendia, Timothy M. Collins, Giri Narasimhan
The role of internal node sequences and the molecular clock in the analysis of serially-sampled data. 107-121
Volume 4, Number 2, 2008
- Peng Chen
Predicting contact map using Radial Basis Function Neural Network with Conformational Energy Function. 123-136 - Yong Chen, Guojun Li:
An effective algorithm of motif finding problem. 137-149 - Jing Li
A novel strategy for detecting multiple loci in Genome-Wide Association Studies of complex diseases. 150-163 - Xingqin Qi
Sorting by transpositions: dealing with length-weighted models. 164-171 - J. Cui, Chun Chen, H. Lu, P. Shen:
Modelling of the mitochondrial apoptosis network. 172-187 - Aili Han, Daming Zhu, Jingchang Pan:
DNA solution based on sequence alignment to the Minimum Spanning Tree problem. 188-200 - Jian Tian, Xuexia Guo, Xiaoyu Chu, Ningfeng Wu, Jun Guo, Bin Yao:
Predicting the protein family of Methyl Parathion Hydrolase. 201-210 - Zhihua Liu, Xiao Sun:
Coronavirus phylogeny based on Base-Base Correlation. 211-220
Volume 4, Number 3, 2008
- Ivan Merelli
A parallel protein surface reconstruction system. 221-239 - Jamil Ahmad, Olivier F. Roux, Gilles Bernot, Jean-Paul Comet, Adrien Richard:
Analysing formal models of genetic regulatory networks with delays. 240-262 - Xutao Deng, Huimin Geng, Hesham H. Ali:
A Hidden Markov Model approach to predicting yeast gene function from sequential gene expression data. 263-273 - Jonas Gamalielsson, Björn Olsson
GOSAP: Gene Ontology-Based Semantic Alignment of Biological Pathways. 274-294 - Kunpeng Zhang, Yun Xu, Guoliang Chen:
PECB: prediction of enzyme catalytic residues based on Naive Bayes classification. 295-305 - Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Creating gene set activity profiles with time-series expression data. 306-323 - Liza S. Z. Larsen, Christopher D. Wassman, G. Wesley Hatfield, Richard H. Lathrop:
Computationally Optimised DNA Assembly of synthetic genes. 324-336 - Liping Du, Shuanhu Wu, Alan Wee-Chung Liew
Spectral analysis of microarray gene expression time series data of Plasmodium falciparum. 337-349
Volume 4, Number 4, 2008
- Zhijun Wu, Yin Zhang:
Solving large double digestion problems for DNA restriction mapping by using branch-and-bound integer linear programming. 351-362 - Bo Geng, Xiaobo Zhou, Y. S. Hung, Stephen T. C. Wong:
Comparison of Bayesian and regression models in missing enzyme identification. 363-374 - Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara:
Protein function prediction with the shortest path in functional linkage graph and boosting. 375-384 - Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu
Integer programming-based approach to allocation of reporter genes for cell array analysis. 385-399 - Martin Brown, Fei He
Robust measurement selection for biochemical pathway experimental design. 400-416 - Haiyong Liao, Michael K. Ng
Unidimensional nonnegative scaling for genome-wide Linkage Disequilibrium maps. 417-434 - Hirokazu Tozaki, Taiichiro Kobe, Kazuyuki Aihara, Hideo Iwasaki
An attempt to reveal a role of a transcription/translation feedback loop in the cyanobacterial KaiC protein-based circadian system by using a semi-synthetic method. 435-444 - Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Protein cavity clustering based on community structure of pocket similarity network. 445-460
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