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Katsuhisa Horimoto
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2020 – today
- 2022
- [j28]Harumi Kagiwada
, Chie Motono, Katsuhisa Horimoto, Kazuhiko Fukui
Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements. Database J. Biol. Databases Curation 2022(2022) (2022)
2010 – 2019
- 2019
- [j27]Satoshi Yamasaki, Takayuki Amemiya, Yukimitsu Yabuki, Katsuhisa Horimoto, Kazuhiko Fukui
ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow. J. Comput. Aided Mol. Des. 33(5): 497-507 (2019) - 2013
- [j26]Taejeong Bae
Identification of upstream regulators for prognostic expression signature genes in colorectal cancer. BMC Syst. Biol. 7: 86 (2013) - [j25]Shigeru Saito, Xinrong Zhou, Taejeong Bae
Identification of master regulator candidates in conjunction with network screening and inference. Int. J. Data Min. Bioinform. 8(3): 366-380 (2013) - 2012
- [j24]Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto:
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. 6(S-1): S2 (2012) - [c15]Akiko Toshimori, Kunio Shimizu, Tingting Yu, Zhining Fan, Xinrong Zhou, Shigeru Saito, Katsuhisa Horimoto, Xia Jinrong, Huarong Zhou:
Exploration of Cellular Relationships from Characteristically Expressed Genes by Partial Canonical Correlation Analysis. CISIS 2012: 567-572 - [c14]Xinrong Zhou, Katsuhisa Horimoto, Shigeru Saito, Luonan Chen, Huarong Zhou:
Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats. ISB 2012: 86-91 - [c13]Zhi-Ping Liu, Wanwei Zhang
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data. ISB 2012: 142-147 - [e3]Katsuhisa Horimoto, Masahiko Nakatsui, Nikolaj Popov:
Algebraic and Numeric Biology - 4th International Conference, ANB 2010, Hagenberg, Austria, July 31- August 2, 2010, Revised Selected Papers. Lecture Notes in Computer Science 6479, Springer 2012, ISBN 978-3-642-28066-5 [contents] - 2011
- [j23]Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression. BMC Syst. Biol. 5(S-1): S16 (2011) - [j22]Shigeru Saito, Yasuko Onuma
Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells. BMC Syst. Biol. 5(S-1): S17 (2011) - [j21]Shigeru Saito
Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method). J. Chem. Inf. Model. 51(1): 61-68 (2011) - [i1]Katsuhisa Horimoto, Katsumi Inoue, Oliver Ray:
International Symposium on Symbolic Systems Biology (NII Shonan Meeting 2011-7). NII Shonan Meet. Rep. 2011 (2011) - 2010
- [j20]Masahiko Nakatsui, Katsuhisa Horimoto, Masahiro Okamoto, Yasuhito Tokumoto, Jun Miyake:
Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions. BMC Syst. Biol. 4(S-2): S9 (2010) - [c12]Masahiko Nakatsui, Alexandre Sedoglavic
A General Procedure for Accurate Parameter Estimation in Dynamic Systems Using New Estimation Errors. ANB 2010: 149-166 - [c11]Shigeru Saito, Xinrong Zhou, Taejeong Bae
A procedure for identifying master regulators in conjunction with network screening and inference. BIBM 2010: 296-301 - [c10]Masahiko Nakatsui, Katsuhisa Horimoto:
Improvement of estimation accuracy in parameter optimization by symbolic computation. CACSD 2010: 1720-1724
2000 – 2009
- 2009
- [j19]Hirokazu Anai, Katsuhisa Horimoto:
Foreword. Math. Comput. Sci. 2(3): 399-400 (2009) - [c9]Tatsuya Akutsu
Completing Networks Using Observed Data. ALT 2009: 126-140 - [c8]Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto:
Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma. CDC 2009: 5624-5630 - [c7]Katsuhisa Horimoto, Shigeru Saito:
Co-Expressed Gene Assessment Based on the Path Consistency Algorithm: Operon Detention in Escherichia coli. SMC 2009: 4280-4286 - 2008
- [j18]Shigeru Saito, Sachiyo Aburatani, Katsuhisa Horimoto:
Network evaluation from the consistency of the graph structure with the measured data. BMC Syst. Biol. 2: 84 (2008) - [j17]Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu
Integer programming-based approach to allocation of reporter genes for cell array analysis. Int. J. Bioinform. Res. Appl. 4(4): 385-399 (2008) - [j16]Daisuke Tominaga, Fukumi Iguchi, Katsuhisa Horimoto, Yutaka Akiyama:
High-throughput Automated Image Processing System for Cell Array Observations. Inf. Media Technol. 3(1): 71-78 (2008) - [j15]Daisuke Tominaga, Katsuhisa Horimoto:
Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion. J. Bioinform. Comput. Biol. 6(4): 747-757 (2008) - [j14]Hiroshi Yoshida, Katsuhisa Horimoto, Hirokazu Anai:
Inference of Probabilities over a Stochastic IL-System by Quantifier Elimination. Math. Comput. Sci. 1(3): 473-485 (2008) - [e2]Katsuhisa Horimoto, Georg Regensburger
Algebraic Biology, Third International Conference, AB 2008, Castle of Hagenberg, Austria, July 31-August 2, 2008, Proceedings. Lecture Notes in Computer Science 5147, Springer 2008, ISBN 978-3-540-85100-4 [contents] - 2007
- [j13]Hiroshi Yoshida, Hirokazu Anai, Katsuhisa Horimoto:
Derivation of rigorous conditions for high cell-type diversity by algebraic approach. Biosyst. 90(2): 486-495 (2007) - [j12]Sachiyo Aburatani, Fuyan Sun, Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto:
Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model. EURASIP J. Bioinform. Syst. Biol. 2007 (2007) - [c6]Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto:
Exact Parameter Determination for Parkinson's Disease Diagnosis with PET Using an Algebraic Approach. AB 2007: 110-124 - [c5]Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh:
Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB 2007: 322-333 - [c4]Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto:
An Algebraic-Numeric Algorithm for the Model Selection in Kinetic Networks. CASC 2007: 433-447 - [e1]Hirokazu Anai, Katsuhisa Horimoto, Temur Kutsia:
Algebraic Biology, Second International Conference, AB 2007, Castle of Hagenberg, Austria, July 2-4, 2007, Proceedings. Lecture Notes in Computer Science 4545, Springer 2007, ISBN 978-3-540-73432-1 [contents] - 2006
- [j11]Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh:
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinform. 22(20): 2488-2492 (2006) - [j10]Tatsuya Akutsu
Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 89-A(5): 1215-1222 (2006) - [j9]K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms. J. Bioinform. Comput. Biol. 4(1): 19-42 (2006) - [j8]Hirokazu Anai, Shigeo Orii, Katsuhisa Horimoto:
Symbolic-numeric Estimation of Parameters in Biochemical Models by Quantifier Elimination. J. Bioinform. Comput. Biol. 4(5): 1097-1118 (2006) - 2005
- [j7]Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto:
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res. 33(Web-Server-Issue): 659-664 (2005) - [c3]Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu:
Clique-based algorithms for protein threading with profiles and constraints. APBC 2005: 51-64 - 2004
- [j6]Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi
ASIAN: a website for network inference. Bioinform. 20(16): 2853-2856 (2004) - [c2]Tatsuya Akutsu
Protein Threading with Profiles and Constraints. BIBE 2004: 537-544 - 2003
- [j5]Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto:
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83(4): 777-788 (2003) - 2002
- [j4]Hiroyuki Toh, Katsuhisa Horimoto:
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinform. 18(2): 287-297 (2002) - 2001
- [j3]Katsuhisa Horimoto, Satoshi Fukuchi, Kentaro Mori:
Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes. Bioinform. 17(9): 791-802 (2001) - [j2]Katsuhisa Horimoto, Hiroyuki Toh:
Statistical estimation of cluster boundaries in gene expression profile data. Bioinform. 17(12): 1143-1151 (2001)
1990 – 1999
- 1998
- [j1]Katsuhisa Horimoto, Mikita Suyama
A method for comparing circular genomes from gene locations: application to mitochondrial genomes. Bioinform. 14(9): 789-802 (1998) - 1994
- [c1]Katsuhisa Horimoto, Kunio Oshima, Akira Tsugita, Jinya Otsuka:
Protein Superfamily Database (Prosup). CODATA 1994: 255-262
Coauthor Index
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