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Genomics, Proteomics & Bioinformatics, Volume 18
Volume 18, Number 1, February 2020
- Zhang Zhang
, Shuhui Song
The Elements of Data Sharing. 1-4 - Wilson Wen Bin Goh
The Birth of Bio-data Science: Trends, Expectations, and Applications. 5-15
- Shahzina Kanwal
Role of Long Non-coding RNAs in Reprogramming to Induced Pluripotency. 16-25
- Ziyi Li
CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-resistant Melanoma. 26-40 - Xiao Han
Epitranscriptomic 5-Methylcytosine Profile in PM2.5-induced Mouse Pulmonary Fibrosis. 41-51 - Fuyi Li
Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. 52-64
- Peng Jia
MSIsensor-pro: Fast, Accurate, and Matched-normal-sample-free Detection of Microsatellite Instability. 65-71
- Chenwei Wang
GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. 72-80
- Yongzhe Ren
SinoDuplex: An Improved Duplex Sequencing Approach to Detect Low-frequency Variants in Plasma cfDNA Samples. 81-90
Volume 18, Number 2, April 2020
- Qingyu Chen
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. 91-103
- Tiansheng Zhu
DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery. 104-119
- Qiong Zhang
hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. 120-128 - Jian Zhao
IRESbase: A Comprehensive Database of Experimentally Validated Internal Ribosome Entry Sites. 129-139 - Xiaoxu Yang
MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals. 140-149 - Xiang Chen, Yi Guo, Xin Chen:
iGMDR: Integrated Pharmacogenetic Resource Guide to Cancer Therapy and Research. 150-160 - Jian Sang
IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data. 161-172 - Jun Yan
SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice. 173-185 - Ningbo Chen
BGVD: An Integrated Database for Bovine Sequencing Variations and Selective Signatures. 186-193
- Wanshan Ning
HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction. 194-207 - Hui-Ju Kao
SuccSite: Incorporating Amino Acid Composition and Informative k-spaced Amino Acid Pairs to Identify Protein Succinylation Sites. 208-219
Volume 18, Number 3, June 2020
- Jiantao Guan
The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms. 221-229
- Zhichao Xu
Comparative Genome Analysis of Scutellaria baicalensis and Scutellaria barbata Reveals the Evolution of Active Flavonoid Biosynthesis. 230-240 - Zijian Zhou
MicroRNAs Are Involved in Maize Immunity Against Fusarium verticillioides Ear Rot. 241-255 - Jihong Hu
Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis. 256-270 - Jinwei Suo, Heng Zhang, Qi Zhao, Nan Zhang, Yongxue Zhang, Ying Li, Baohua Song, Juanjuan Yu, Jianguo Cao, Tai Wang, Ji Luo, Lihai Guo, Jun Ma, Xumin Zhang, Yimin She, Lianwei Peng, Weimin Ma, Siyi Guo, Shaojun Dai:
Na2CO3-responsive Photosynthetic and ROS Scavenging Mechanisms in Chloroplasts of Alkaligrass Revealed by Phosphoproteomics. 271-288 - Xiaohuang Lin
Characterization of Lysine Monomethylome and Methyltransferase in Model Cyanobacterium Synechocystis sp. PCC 6803. 289-304 - Liya Zhu
Ubiquitinome Profiling Reveals the Landscape of Ubiquitination Regulation in Rice Young Panicles. 305-320 - Shi-Jian Zhang
Genome Size Evolution Mediated by Gypsy Retrotransposons in Brassicaceae. 321-332 - Jinpeng Wang
Paleo-polyploidization in Lycophytes. 333-340
- Yuan Liang
Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea. 341-351
- Peijing Zhang
CircPlant: An Integrated Tool for circRNA Detection and Functional Prediction in Plants. 352-358
Volume 18, Number 4, August 2020
- Zixiang Yan
G9a/GLP-sensitivity of H3K9me2 Demarcates Two Types of Genomic Compartments. 359-370 - Yuhuan Li
m6A Regulates Liver Metabolic Disorders and Hepatogenous Diabetes. 371-383 - Monika Hiller
The mRNA Binding Proteome of Proliferating and Differentiated Muscle Cells. 384-396 - Zhi-Fang Gao, Zhuo Shen, Qing Chao, Hai-Yan Zheng, Xuan-Liang Ge, Tian-Cong Lu, Haiyan Zheng, Chun-Rong Qian, Bai-Chen Wang:
Large-scale Proteomic and Phosphoproteomic Analyses of Maize Seedling Leaves During De-etiolation. 397-414 - Shan Chi
Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica. 415-429 - Akash Srivastava
Tissue-specific Gene Expression Changes Are Associated with Aging in Mice. 430-442 - Jun Wang
Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean Eriocheir sinensis. 443-454 - Hongmei Luo
The Wolfiporia cocos Genome and Transcriptome Shed Light on the Formation of Its Edible and Medicinal Sclerotium. 455-467 - Jun Wang
Denoising Autoencoder, A Deep Learning Algorithm, Aids the Identification of A Novel Molecular Signature of Lung Adenocarcinoma. 468-480 - Ya-Wen Zhang
mrMLM v4.0.2: An R Platform for Multi-locus Genome-wide Association Studies. 481-487
- Yue-Feng Wang, Qing Chao, Zhe Li, Tian-Cong Lu, Hai-Yan Zheng, Cai-Feng Zhao, Zhuo Shen, Xiao-Hui Li, Bai-Chen Wang:
Corrigendum to "Large-scale Identification and Time-course Quantification of Ubiquitylation Events During Maize Seedling De-etiolation" [Genomics Proteomics Bioinformatics 17 (6) (2019) 603-622]. 488
Volume 18, Number 5, October 2020
- Lindan Ji
Ambient Temperature is A Strong Selective Factor Influencing Human Development and Immunity. 489-500 - Kun Li
Landscape and Dynamics of the Transcriptional Regulatory Network During Natural Killer Cell Differentiation. 501-515 - Jing Sun
The Biological Significance of Multi-copy Regions and Their Impact on Variant Discovery. 516-524 - Yidi Sun
Kinase-substrate Edge Biomarkers Provide A More Accurate Prognostic Prediction in ER-negative Breast Cancer. 525-538 - Yan Jiang
Pooled Plasmid Sequencing Reveals the Relationship Between Mobile Genetic Elements and Antimicrobial Resistance Genes in Clinically Isolated Klebsiella pneumoniae. 539-548 - Arup Panda
Exploring Potential Signals of Selection for Disordered Residues in Prokaryotic and Eukaryotic Proteins. 549-564
- Song He
PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion. 565-581 - Bin Yu
GTB-PPI: Predict Protein-protein Interactions Based on L1-regularized Logistic Regression and Gradient Tree Boosting. 582-592 - Md. Mehedi Hasan
iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features. 593-600
- Jee Eun Kang
SeSaMe: Metagenome Sequence Classification of Arbuscular Mycorrhizal Fungi-associated Microorganisms. 601-612 - Jee Eun Kang
SeSaMe PS Function: Functional Analysis of the Whole Metagenome Sequencing Data of the Arbuscular Mycorrhizal Fungi. 613-623
- Jun Li
Corrigendum to "Antibiotic Treatment Drives the Diversification of the Human Gut Resistome" [Genomics Proteomics Bioinformatics 17 (1) (2019) 39-51]. 624-625
Volume 18, Number 6, December 2020
- Jun Yu
From Mutation Signature to Molecular Mechanism in the RNA World: A Case of SARS-CoV-2. 627-639
- Qi Liu
Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters. 640-647 - Xufei Teng
Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. 648-663 - Ting Li
Long Non-coding RNA Derived from lncRNA-mRNA Co-expression Networks Modulates the Locust Phase Change. 664-678 - Yongxi Song
Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis. 679-695 - Wang-Lin Liu
Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock. 696-707 - Ben Wang
Increased Expression of Colonic Mucosal Melatonin in Patients with Irritable Bowel Syndrome Correlated with Gut Dysbiosis. 708-720 - Xizhan Xu
Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota Are Attributable to Its Key Ingredient Berberine. 721-736
- Yafei Chang
Different Gene Networks Are Disturbed by Zika Virus Infection in A Mouse Microcephaly Model. 737-748
- Shuhui Song
The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. 749-759 - Guocai Yao
MicroPhenoDB Associates Metagenomic Data with Pathogenic Microbes, Microbial Core Genes, and Human Disease Phenotypes. 760-772
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