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Jun Yu 0004
Person information
- affiliation: Chinese Academy of Sciences, Beijing Institute of Genomics, China
- affiliation (former): Zhejiang University, James D. Watson Institute of Genome Sciences, China
Other persons with the same name
- Jun Yu — disambiguation page
- Jun Yu 0001
— University of Science and Technology of China, Department of Automation, Hefei, China
- Jun Yu 0002
- Jun Yu 0003 — Dalian University of Technology, Faculty of Electronic Information and Electrical Engineering, China
- Jun Yu 0005
- Jun Yu 0006
- Jun Yu 0007
- Jun Yu 0008
- Jun Yu 0009
- Jun Yu 0010
- Jun Yu 0011
- Jun Yu 0012
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2020 – today
- 2023
- [j71]Jingqi Zhou
Draft Genome of White-blotched River Stingray Provides Novel Clues for Niche Adaptation and Skeleton Formation. Genom. Proteom. Bioinform. 21(3): 501-514 (2023) - [j70]Jun Yu
Toward Inclusiveness and Thoroughness: A Paradigm Shift from More-Ever-Omics to Holovivology. Genom. Proteom. Bioinform. 21(5): 895-896 (2023) - [j69]Zhang Zhang
Toward a New Paradigm of Genomics Research - Celebration of the 20th Anniversary of Beijing Institute of Genomics. Genom. Proteom. Bioinform. 21(5): 904-909 (2023) - [j68]Jingfa Xiao
T2T-YAO, T2T-SHUN, and More. Genom. Proteom. Bioinform. 21(6): 1081-1082 (2023) - 2022
- [j67]Shaochuan Li, Yuning Yang, Xin Wang, Jun Li
Colorectal cancer subtype identification from differential gene expression levels using minimalist deep learning. BioData Min. 15(1) (2022) - [c2]Ming Xiao, Ruiying Yin, Pengbo Gao, Jun Yu, Fubo Ma, Zichun Dai, Le Zhang:
Position-Defined CpG Islands Provide Complete Co-methylation Indexing for Human Genes. ICIC (2) 2022: 319-333 - 2021
- [j66]Le Zhang
CpG-island-based annotation and analysis of human housekeeping genes. Briefings Bioinform. 22(1): 515-525 (2021) - [j65]Qingren Meng, Yanan Chu, Changjun Shao, Jing Chen, Jian Wang, Zhancheng Gao, Jun Yu, Yu Kang
Roles of host small RNAs in the evolution and host tropism of coronaviruses. Briefings Bioinform. 22(2): 1096-1105 (2021) - [j64]Saifur Rahaman
CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA. Bioinform. 37(19): 3319-3327 (2021) - [j63]Ming Xiao
2019nCoVAS: Developing the Web Service for Epidemic Transmission Prediction, Genome Analysis, and Psychological Stress Assessment for 2019-nCoV. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1250-1261 (2021) - 2020
- [j62]Zhang Zhang
The Elements of Data Sharing. Genom. Proteom. Bioinform. 18(1): 1-4 (2020) - [j61]Yuan Liang
Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea. Genom. Proteom. Bioinform. 18(3): 341-351 (2020) - [j60]Shan Chi
Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica. Genom. Proteom. Bioinform. 18(4): 415-429 (2020) - [j59]Jun Yu
From Mutation Signature to Molecular Mechanism in the RNA World: A Case of SARS-CoV-2. Genom. Proteom. Bioinform. 18(6): 627-639 (2020) - [j58]Xufei Teng
Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. Genom. Proteom. Bioinform. 18(6): 648-663 (2020) - [j57]Ming Xiao
CGIDLA: Developing the Web Server for CpG Island Related Density and LAUPs (Lineage-Associated Underrepresented Permutations) Study. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2148-2154 (2020)
2010 – 2019
- 2019
- [j56]Zhang Zhang
In Memory of Vladimir B. Bajic (1952-2019). Genom. Proteom. Bioinform. 17(5): 473-474 (2019) - [j55]Xing Shi
Meta-analysis Reveals Potential Influence of Oxidative Stress on the Airway Microbiomes of Cystic Fibrosis Patients. Genom. Proteom. Bioinform. 17(6): 590-602 (2019) - 2018
- [j54]Le Zhang
Lineage-associated underrepresented permutations (LAUPs) of mammalian genomic sequences based on a Jellyfish-based LAUPs analysis application (JBLA). Bioinform. 34(21): 3624-3630 (2018) - [j53]Jun Yu
A Scientist Guerilla Fighter in the Frontiers of Bioinformatics - In Memory of Bailin Hao. Genom. Proteom. Bioinform. 16(5): 307-309 (2018) - [j52]Wanfei Liu
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes. Genom. Proteom. Bioinform. 16(5): 373-381 (2018) - [j51]Shuhui Song
Rice Genomics: over the Past Two Decades and into the Future. Genom. Proteom. Bioinform. 16(6): 397-404 (2018) - [j50]Shuangyang Wu
REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results. J. Comput. Biol. 25(5): 509-516 (2018) - 2017
- [j49]Xin Sheng, Jiayan Wu
MTD: a mammalian transcriptomic database to explore gene expression and regulation. Briefings Bioinform. 18(1): 28-36 (2017) - [j48]Hasan Awad Aljohi, Wanfei Liu
ISVASE: identification of sequence variant associated with splicing event using RNA-seq data. BMC Bioinform. 18(1): 320 (2017) - [j47]Jun Yu
A Piece of History that Cannot Be Missed for Precision Medicine. Genom. Proteom. Bioinform. 15(1): 1-2 (2017) - [j46]Jun Yu
A Step Forward in Precision Medicine on "One Belt One Road". Genom. Proteom. Bioinform. 15(4): 219 (2017) - 2016
- [j45]Jun Yu
Precision Medicine: What Do We Expect in the Scope of Basic Biomedical Sciences? Genom. Proteom. Bioinform. 14(1): 1-3 (2016) - [j44]Yu Xue
Precision Medicine: What Challenges Are We Facing? Genom. Proteom. Bioinform. 14(5): 253-261 (2016) - 2015
- [j43]Dong Zou
Biological Databases for Human Research. Genom. Proteom. Bioinform. 13(1): 55-63 (2015) - [j42]Jing-Fa Xiao
A Brief Review of Software Tools for Pangenomics. Genom. Proteom. Bioinform. 13(1): 73-76 (2015) - [j41]Lina Ma
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res. 43(Database-Issue): 187-192 (2015) - [j40]Dapeng Wang
Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs. Nucleic Acids Res. 43(Database-Issue): 990-995 (2015) - 2014
- [j39]Yongbing Zhao, Xinmiao Jia, Junhui Yang, Yunchao Ling, Zhang Zhang
PanGP: A tool for quickly analyzing bacterial pan-genome profile. Bioinform. 30(9): 1297-1299 (2014) - [j38]Fu-Qiang Wang, Jun Zhong
Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum. BMC Genom. 15(S-1): S11 (2014) - [j37]Jiayan Wu
Ribogenomics: the Science and Knowledge of RNA. Genom. Proteom. Bioinform. 12(2): 57-63 (2014) - [j36]Wei Xu, Chengqi Xin, Qiang Lin, Feng Ding
Adolescent Mouse Takes on An Active Transcriptomic Expression During Postnatal Cerebral Development. Genom. Proteom. Bioinform. 12(3): 111-119 (2014) - [j35]Zhancheng Gao, Yu Kang, Jun Yu, Lufeng Ren:
Human Pharyngeal Microbiome May Play A Protective Role in Respiratory Tract Infections. Genom. Proteom. Bioinform. 12(3): 144-150 (2014) - [j34]Linlin Pan
A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary. Genom. Proteom. Bioinform. 12(5): 239-248 (2014) - [j33]Zhang Zhang
RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res. 42(Database-Issue): 1222-1228 (2014) - 2013
- [j32]Zhang Zhang
Does the Genetic Code Have A Eukaryotic Origin? Genom. Proteom. Bioinform. 11(1): 41-55 (2013) - [j31]Yuli Li, Shuhui Song, Cuiping Li, Jun Yu:
MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data. Genom. Proteom. Bioinform. 11(1): 72-75 (2013) - [j30]Dapeng Wang
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. Nucleic Acids Res. 41(Database-Issue): 1199-1205 (2013) - 2012
- [j29]Yongbing Zhao, Jiayan Wu
PGAP: pan-genomes analysis pipeline. Bioinform. 28(3): 416-418 (2012) - [j28]Zhang Zhang
Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance. BMC Bioinform. 13: 43 (2012) - [j27]Peng Cui, Feng Ding
Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes. Genom. Proteom. Bioinform. 10(1): 4-10 (2012) - [j26]Peng Cui, Qiang Lin, Feng Ding, Songnian Hu
The Transcript-centric Mutations in Human Genomes. Genom. Proteom. Bioinform. 10(1): 11-22 (2012) - [j25]Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Feng Ding, Chengqi Xin, Jianing Geng, Shuhui Song, Fanglin Sun, Songnian Hu
The Association Between H3K4me3 and Antisense Transcription. Genom. Proteom. Bioinform. 10(2): 74-81 (2012) - [j24]Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding
Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. Genom. Proteom. Bioinform. 10(2): 82-93 (2012) - [j23]Zhang Zhang
The Pendulum Model for Genome Compositional Dynamics: from the Four Nucleotides to the Twenty Amino Acids. Genom. Proteom. Bioinform. 10(4): 175-180 (2012) - [j22]Hao Wu, Hongzhu Qu, Ning Wan, Zhang Zhang
Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition. Genom. Proteom. Bioinform. 10(4): 186-196 (2012) - [j21]Lina Ma
An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. Genom. Proteom. Bioinform. 10(6): 326-335 (2012) - [c1]Jingde Bu, Jiayan Wu, Meili Chen, Jing-Fa Xiao, Jun Yu, Xuebin Chi, Zhong Jin:
BAsplice: Bi-direction alignment for detecting splice junctions. ISB 2012: 252-255 - 2011
- [j20]Zhang Zhang
On the Organizational Dynamics of the Genetic Code. Genom. Proteom. Bioinform. 9(1-2): 21-29 (2011) - [j19]Tongwu Zhang, Yingfeng Luo, Kan Liu
BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data. Genom. Proteom. Bioinform. 9(6): 238-244 (2011) - 2010
- [j18]Dapeng Wang
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies. Genom. Proteom. Bioinform. 8(1): 77-80 (2010) - [j17]Ximiao He
The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial Genome. Genom. Proteom. Bioinform. 8(2): 81-91 (2010) - [j16]Kaifu Chen, Lei Wang, Meng Yang, Jiucheng Liu, Chengqi Xin, Songnian Hu
Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans. Genom. Proteom. Bioinform. 8(2): 92-102 (2010) - [j15]Jun Wang
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8(4): 211-228 (2010) - [j14]Wanfei Liu, Dawei Huang, Kan Liu
Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. Genom. Proteom. Bioinform. 8(4): 229-237 (2010)
2000 – 2009
- 2009
- [j13]Guoqiang Zhang, Lingxia Zhang, Mingcheng Zhang, Linlin Pan, Fengyu Wang, Jun Huang, Guoli Li, Jun Yu, Songnian Hu
Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG Vaccinees. Genom. Proteom. Bioinform. 7(3): 107-115 (2009) - [j12]Dapeng Wang
How Do Variable Substitution Rates Influence Ka and Ks Calculations? Genom. Proteom. Bioinform. 7(3): 116-127 (2009) - [j11]Yimei Cai, Xiaomin Yu, Songnian Hu
A Brief Review on the Mechanisms of miRNA Regulation. Genom. Proteom. Bioinform. 7(4): 147-154 (2009) - 2008
- [j10]Weiwei Wang, Qibin Luo, Haiyan Guo, Peter Bossier
Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using DNA Barcoding. Genom. Proteom. Bioinform. 6(3-4): 155-162 (2008) - 2007
- [j9]Jing-Fa Xiao, Jun Yu:
A Scenario on the Stepwise Evolution of the Genetic Code. Genom. Proteom. Bioinform. 5(3-4): 143-151 (2007) - [j8]Suhua Chang, Jiajie Zhang, Xiaoyun Liao, Xinxing Zhu, Dahai Wang, Jiang Zhu, Tao Feng, Baoli Zhu, George F. Gao, Jian Wang, Huanming Yang
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res. 35(Database-Issue): 376-380 (2007) - 2006
- [j7]Zhang Zhang
Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution Rates. Genom. Proteom. Bioinform. 4(3): 173-181 (2006) - [j6]Xiao-Qian Zhao, Jian-Fei Hu, Jun Yu:
Comparative Analysis of Eubacterial DNA Polymerase III Alpha Subunits. Genom. Proteom. Bioinform. 4(4): 203-211 (2006) - [j5]Zhang Zhang
KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging. Genom. Proteom. Bioinform. 4(4): 259-263 (2006) - 2005
- [j4]Jing Wang, Qingyou Xia, Ximiao He
SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res. 33(Database-Issue): 399-402 (2005) - [j3]Jing Wang, Ximiao He
ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. 33(Database-Issue): 438-441 (2005) - [j2]Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang
ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun. PLoS Comput. Biol. 1(4) (2005) - 2004
- [j1]Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 32(Database-Issue): 377-382 (2004)
Coauthor Index
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