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Genomics, Proteomics & Bioinformatics, Volume 16
Volume 16, Number 1, February 2018
- Leroy E. Hood
:
Lessons Learned as President of the Institute for Systems Biology (2000-2018). 1-9
- Yueqiang Wang
Genome Writing: Current Progress and Related Applications. 10-16 - Chensi Cao
Deep Learning and Its Applications in Biomedicine. 17-32 - Changting Meng
Human Gut Microbiota and Gastrointestinal Cancer. 33-49 - Yan Chen
Microvesicles as Emerging Biomarkers and Therapeutic Targets in Cardiometabolic Diseases. 50-62 - Manuel Mauricio Goez
Preprocessing of 2-Dimensional Gel Electrophoresis Images Applied to Proteomic Analysis: A Review. 63-72
- Johana A. Luna Coronell
The Immunome of Colon Cancer: Functional In Silico Analysis of Antigenic Proteins Deduced from IgG Microarray Profiling. 73-84
Volume 16, Number 2, April 2018
Review
- Jinbo Huang
Structural Insights into N6-methyladenosine (m6A) Modification in the Transcriptome. 85-98 - Shanhui Liao
YTH Domain: A Family of N6-methyladenosine (m6A) Readers. 99-107 - Liming Ma
Applications of RNA Indexes for Precision Oncology in Breast Cancer. 108-119 - Ke Wu
The Role of Exportin-5 in MicroRNA Biogenesis and Cancer. 120-126
- Yuan Zhou
Comparative Analysis of Human Genes Frequently and Occasionally Regulated by m6A Modification. 127-135
- Jiaqi Gu, Ming Wang, Yang Yang, Ding Qiu, Yiqun Zhang, Jinbiao Ma, Yu Zhou
GoldCLIP: Gel-omitted Ligation-dependent CLIP. 136-143
- Junchao Shi
SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs. 144-151
Volume 16, Number 3, June 2018
- Chi Zhang
Reversible RNA Modification N1-methyladenosine (m1A) in mRNA and tRNA. 155-161
- Andreas Keller
Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development. 162-171 - Yajing Chu
Tet2 Regulates Osteoclast Differentiation by Interacting with Runx1 and Maintaining Genomic 5-Hydroxymethylcytosine (5hmC). 172-186 - Ji Zhang
5-Hydroxymethylome in Circulating Cell-free DNA as A Potential Biomarker for Non-small-cell Lung Cancer. 187-199 - Chunmei Cui
Identification and Analysis of Human Sex-biased MicroRNAs. 200-211
- Erin L. Crowgey
A Systems Biology Approach for Studying Heterotopic Ossification: Proteomic Analysis of Clinical Serum and Tissue Samples. 212-220
Volume 16, Number 4, August 2018
Preface
- Zhang Zhang
Bioinformatics Commons: The Cornerstone of Life and Health Sciences. 223-225 - Rui Dong
CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison. 226-233 - Qing Huan
HeteroMeth: A Database of Cell-to-cell Heterogeneity in DNA Methylation. 234-243 - Hao-Dong Xu
PTMD: A Database of Human Disease-associated Post-translational Modifications. 244-251 - Guanting Lu
GAAD: A Gene and Autoimmiune Disease Association Database. 252-261 - Linna Peng
CCGD-ESCC: A Comprehensive Database for Genetic Variants Associated with Esophageal Squamous Cell Carcinoma in Chinese Population. 262-268 - Qiuyu Lian
HCCDB: A Database of Hepatocellular Carcinoma Expression Atlas. 269-275 - Jingcheng Wu
TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis. 276-282 - Huan Qi
PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. 283-293
- Yubin Xie
DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning. 294-306
Volume 16, Number 5, October 2018
Editorial
- Jun Yu
A Scientist Guerilla Fighter in the Frontiers of Bioinformatics - In Memory of Bailin Hao. 307-309 - Guanghong Zuo
Polyphyly in 16S rRNA-based LVTree Versus Monophyly in Whole-genome-based CVTree. 310-319
- Dongfang Wang
VASC: Dimension Reduction and Visualization of Single-cell RNA-seq Data by Deep Variational Autoencoder. 320-331 - Dimitrios Kleftogiannis
TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers. 332-341 - Stefano Perna, Pietro Pinoli, Stefano Ceri, Limsoon Wong:
TICA: Transcriptional Interaction and Coregulation Analyzer. 342-353 - Shi-Jian Zhang
Machine Learning Models for Genetic Risk Assessment of Infants with Non-syndromic Orofacial Cleft. 354-364
- Riccardo Calandrelli
GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data. 365-372 - Wanfei Liu
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes. 373-381 - Qidi Feng
AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals. 382-385
Volume 16, Number 6, December 2018
- Ding Tang
From Basic Research to Molecular Breeding - Chinese Scientists Play A Central Role in Boosting World Rice Production. 389-392 - Haiyang Wang
Development of the "Third-Generation" Hybrid Rice in China. 393-396
- Shuhui Song
Rice Genomics: over the Past Two Decades and into the Future. 397-404 - Tanyaradzwa Rodgers Ngara
Recent Advances in Function-based Metagenomic Screening. 405-415
- Wenfang Zhou
Discovery of Novel Androgen Receptor Ligands by Structure-based Virtual Screening and Bioassays. 416-427 - Lianzhong Zhang
RNF126 Quenches RNF168 Function in the DNA Damage Response. 428-438 - Shangang Jia
An Exome-seq Based Tool for Mapping and Selection of Candidate Genes in Maize Deletion Mutants. 439-450
- Zhen Chen
Integration of A Deep Learning Classifier with A Random Forest Approach for Predicting Malonylation Sites. 451-459
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