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Frontiers in Neuroinformatics, Volume 7
Volume 7, 2013
- Heraldo Memelli
, Benjamin Torben-Nielsen, James R. Kozloski:
Self-referential forces are sufficient to explain different dendritic morphologies. 1 - Lucia Billeci
NEuronMOrphological analysis tool: open-source software for quantitative morphometrics. 2 - Kunjan D. Rana
A fast statistical significance test for baseline correction and comparative analysis in phase locking. 3 - Roy Ben-Shalom
Accelerating compartmental modeling on a graphical processing unit. 4 - Kristin Hansson, Mehrdad Jafari-Mamaghani, Patrik Krieger
RipleyGUI: software for analyzing spatial patterns in 3D cell distributions. 5 - Adam B. Barrett, Lionel C. Barnett:
Granger causality is designed to measure effect, not mechanism. 6 - Sarah Maynard, Christopher J. Mungall
A knowledge based approach to matching human neurodegenerative disease and animal models. 7 - Ethan Meyers:
The neural decoding toolbox. 8 - David Picado-Muiño, Christian Borgelt, Denise Berger
Finding neural assemblies with frequent item set mining. 9 - Paula Leon
The Virtual Brain: a simulator of primate brain network dynamics. 10 - Martin Telefont:
Bookreview of principles of data integration. 11 - Russell A. Poldrack
Toward open sharing of task-based fMRI data: the OpenfMRI project. 12 - Are Losnegård
White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation. 13 - Thomas V. Wiecki, Imri Sofer, Michael Joshua Frank:
HDDM: Hierarchical Bayesian estimation of the Drift-Diffusion Model in Python. 14 - François Budin, Marion Hoogstoel, Patrick Reynolds, Michael Grauer, Shonagh K. O'Leary-Moore, Ipek Oguz:
Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. 15 - Adrian Stefan Andronache, Cristina Rosazza, Davide Sattin
Impact of functional MRI data preprocessing pipeline on default-mode network detectability in patients with disorders of consciousness. 16 - Rebekah C. Evans
Growing a garden of neurons. 17 - Stephen D. Larson, Maryann E. Martone
NeuroLex.org: an online framework for neuroscience knowledge. 18 - Roger V. Hoang, Devyani Tanna, Laurence C. Jayet Bray, Sergiu M. Dascalu, Frederick C. Harris Jr.
A novel CPU/GPU simulation environment for large-scale biologically realistic neural modeling. 19 - Jeremy Cockfield, Kyungmin Su, Kay A. Robbins:
MOBBED: a computational data infrastructure for handling large collections of event-rich time series datasets in MATLAB. 20 - David Shin, I. Burak Özyurt, Thomas T. Liu
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data. 21 - Matthias Ehrlich, René Schüffny:
Neural Schematics as a unified formal graphical representation of large-scale Neural Network Structures. 22 - Wen Li, Nancy Andreasen
Automated parcellation of the brain surface generated from magnetic resonance images. 23 - Verónica Mäki-Marttunen, Ibai Díez
Disruption of transfer entropy and inter-hemispheric brain functional connectivity in patients with disorder of consciousness. 24 - Lei Wang, Alexander Kogan, Derin J. Cobia, Kathryn I. Alpert, Anthony Kolasny, Michael I. Miller, Daniel S. Marcus:
Northwestern University Schizophrenia Data and Software Tool (NUSDAST). 25 - Robert Pröpper, Klaus Obermayer:
Spyke Viewer: a flexible and extensible platform for electrophysiological data analysis. 26 - Hongzhi Wang, Paul A. Yushkevich:
Multi-atlas segmentation with joint label fusion and corrective learning - an open source implementation. 27 - Robert A. McDougal, Michael L. Hines, William W. Lytton:
Reaction-diffusion in the NEURON simulator. 28 - Eun Young Kim, Hans J. Johnson
Robust multi-site MR data processing: iterative optimization of bias correction, tissue classification, and registration. 29 - Olusola Ajilore
Constructing the resting state structural connectome. 30 - Michael I. Miller, Andreia V. Faria, Kenichi Oishi, Susumu Mori:
High-throughput neuro-imaging informatics. 31 - Richard Beare
Brain extraction using the watershed transform from markers. 32 - Gerick M. H. Lee, Sara Fattinger
Electroencephalogram approximate entropy influenced by both age and sleep. 33 - Ján Antolík
Integrated workflows for spiking neuronal network simulations. 34 - Kishore R. Mosaliganti, Arnaud Gelas, Sean G. Megason:
An efficient, scalable, and adaptable framework for solving generic systems of level-set PDEs. 35 - Cyrille Rossant
Hardware-accelerated interactive data visualization for neuroscience in Python. 36 - José Luis Pérez Velazquez, Roberto Fernández Galán
Information gain in the brain's resting state: A new perspective on autism. 37 - Kyle H. Ambert, Aaron M. Cohen, Gully A. P. C. Burns
Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. 38 - Nicholas J. Tustison
Explicit B-spline regularization in diffeomorphic image registration. 39 - Mario Michael Krell
pySPACE - a signal processing and classification environment in Python. 40 - Henrik Lindén
LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. 41 - Ioannis Vlachos, Yury V. Zaytsev, Sebastian Spreizer
Neural system prediction and identification challenge. 43 - Jean-Luc Richard Stevens, Marco Elver, James A. Bednar:
An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook. 44 - Bradley C. Lowekamp, David T. Chen
The Design of SimpleITK. 45 - Michael Grauer, Patrick Reynolds, Marion Hoogstoel, François Budin, Martin Andreas Styner, Ipek Oguz:
A midas plugin to enable construction of reproducible web-based image processing pipelines. 46 - Michael J. Hull, David J. Willshaw:
morphforge: a toolbox for simulating small networks of biologically detailed neurons in Python. 47 - Trevor Bekolay, James Bergstra, Eric Hunsberger, Travis DeWolf
Nengo: a Python tool for building large-scale functional brain models. 48 - Sebastian Muehlboeck, Eric Westman
TheHiveDB image data management and analysis framework. 49 - Denis P. Shamonin, Esther Bron
Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer's Disease. 50 - Audrey R. Verde, François Budin, Jean-Baptiste Berger, Aditya Gupta
UNC-Utah NA-MIC framework for DTI fiber tract analysis. 51 - Jonas Kubilius
A framework for streamlining research workflow in neuroscience and psychology. 52 - Alexei Ossadtchi, Platon Pronko, Sylvain Baillet
Mutual information spectrum for selection of event-related spatial components. Application to eloquent motor cortex mapping. 53
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