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HISB 2012: La Jolla, CA, USA
- 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012, La Jolla, CA, USA, September 27-28, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-4803-4
Oral Presentations
- Dimitrios Markonis, Roger Schaer, Ivan Eggel, Henning Müller
, Adrien Depeursinge
Using MapReduce for Large-Scale Medical Image Analysis. 1 - Michael G. Kahn, Lisa M. Schilling, Bethany M. Kwan, Aidan Bunting, Chris Uhrich, Colleen Singleton:
Preparing Electronic Health Records Data for Comparative Effectiveness Studies. 2 - Myung-kyung Suh, Jonathan Woodbridge, Tannaz Moin, Mars Lan, Nabil Alshurafa
Dynamic Task Optimization in Remote Diabetes Monitoring Systems. 3-11 - Kavishwar B. Wagholikar
Clinical Decision Support for Colonoscopy Surveillance Using Natural Language Processing. 12-21 - Vijay Garla, Cynthia Brandt:
Knowledge-Based Biomedical Word Sense Disambiguation: An Evaluation and Application to Clinical Document Classification. 22 - Jonathan Woodbridge, Bobak Mortazavi, Majid Sarrafzadeh, Alex A. T. Bui:
Aggregated Indexing of Biomedical Time Series Data. 23-30 - Gyemin Lee
Predicting Complications of Percutaneous Coronary Intervention Using a Novel Support Vector Method. 31 - Louise Deléger, Holly Brodzinski, Haijun Zhai, Qi Li, Todd Lingren, Eric S. Kirkendall
Using Natural Language Processing and the Electronic Health Record for Appendicitis Risk Stratification. 32 - Anni Coden, Daniel Gruhl, Neal Lewis, Michael A. Tanenblatt, Joe Terdiman:
SPOT the Drug! An Unsupervised Pattern Matching Method to Extract Drug Names from Very Large Clinical Corpora. 33-39 - Alexander Hsieh, Son Doan
Demographics Identification: Variable Extraction Resource (DIVER). 40-49 - Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification. 50 - María Adela Grando
Ontological Approach for the Management of Informed Consent Permissions. 51-60 - Petra Stepanowsky, Jihoon Kim, Lucila Ohno-Machado
A Robust Feature Selection Method for Novel Pre-microRNA Identification Using a Combination of Nucleotide-Structure Triplets. 61 - Son Doan
Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. 62-71 - Siddhartha Jonnalagadda, Guilherme Del Fiol
Automatically Extracting Sentences from Medline Citations to Support Clinicians' Information Needs. 72 - Dhundy Bastola, Scott McGrath
A Comparison of Computational Approaches in the Molecular Identification of Pathogenic Organisms. 73 - Thankam Thyvalikakath
Designing Clinical Data Presentation in Electronic Dental Records Using Cognitive Task Analysis Methods. 74 - Benjamin Xueqi Guan, Bir Bhanu
Automated Human Embryonic Stem Cell Detection. 75-82 - Jiao Li
A Network Approach for Computational Drug Repositioning. 83 - Qi Li, Haijun Zhai, Louise Deléger, Todd Lingren, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Linking Medications and Their Attributes in Clinical Notes and Clinical Trial Announcements for Information Extraction: A Sequence Labeling Approach. 84 - Vishal N. Patel, David C. Kaelber
Azathioprine-Induced Comorbidity Network Reveals Patterns and Predictors of Nephrotoxicity and Neutrophilia. 85 - Gabriel Humpire-Mamani, Agma Juci Machado Traina, Caetano Traina Jr.
FSCoMS: Feature Selection of Medical Images Based on Compactness Measure from Scatterplots. 86-95 - Juan Anna Wu, William Hsu
An Approach for Incorporating Context in Building Probabilistic Predictive Models. 96-105 - Haijun Zhai, Todd Lingren, Louise Deléger, Qi Li, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Cheap, Fast, and Good Enough for the Non-biomedical Domain but is It Usable for Clinical Natural Language Processing? Evaluating Crowdsourcing for Clinical Trial Announcement Named Entity Annotations. 106 - Yang Chen, Xiaofeng Ren, Guo-Qiang Zhang
Ontology-Guided Approach to Retrieving Disease Manifestation Images for Health Image Base Construction. 107 - Todd Lingren, Louise Deléger, Katalin Molnár, Haijun Zhai, Jareen Meinzen-Derr, Megan Kaiser, Laura Stoutenborough, Qi Li, Imre Solti:
Pre-annotating Clinical Notes and Clinical Trial Announcements for Gold Standard Corpus Development: Evaluating the Impact on Annotation Speed and Potential Bias. 108
Posters
- Hsei-Wei Wang:
Small RNA Sequencing in microRNA Research. 109 - Bernard Gibaud, Germain Forestier
OntoVIP: An Ontology for the Annotation of Object Models Used for Medical Image Simulation. 110 - Neda Alipanah, Hyeoneui Kim
Building an Ontology of Phenotypes for Existing GWAS Studies. 111 - Marina Sokolova, Yasser Jafer, David Schramm
Text Mining for Personal Health Information on Twitter. 112 - Nathan Salomonis:
AltAnalyze - An Optimized Platform for RNA-Seq Splicing and Domain-Level Analyses. 113 - Nathan Salomonis:
LineageProfiler: Automated Classification and Visualization of Cell Type Identity for Mammalian Transcriptomes. 114 - Ali Zifan, Brian E. Chapman:
Automatic Detection of Coronary Vessels Using Mutli-scale Texture Dictionaries. 115 - Jyh-Ying Peng, Yen-Jen Chen, Marc D. Green, Susan L. Forsburg, Chun-Nan Hsu:
Simultaneous Segmentation of Cell and Nucleus in Schizosaccharomyces pombe Images with Focus Gradient. 116 - Mayank Agarwal, Javed Mostafa:
Cohort Selection through Content-Based Image Retrieval: vfM A Case Study. 117 - Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar
Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. 118 - Jose Eduardo Kroll, Jorge Estefano de Souza, Beatriz Stransky, Gustavo A. de Souza, Sandro J. de Souza:
Integrating Transcriptome and Proteome Information for the Analysis of Alternative Splicing. 119 - Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon:
MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data. 120 - Qingxiang Zhu, Hongkai Xiong
Pulmonary Blood Vessels and Nodules Segmentation via Vessel Energy Function and Radius-Variable Sphere Model. 121 - Matthew Munoz, Alexander C. Zambon:
InSilico-ChIP: A Coregulation and Evolutionary Conservation Based Transcription Factor and Target Gene Predictor. 122 - Ko-Wei Lin, Melissa Tharp, Michael Conway, Mindy K. Ross, Alexander Hsieh, Hyeoneui Kim
Feasibility of Using Clinical Element Models (CEM) to Standardize Phenotype Variables in the Database of Genotypes and Phenotypes (dbGaP). 123 - Prasanna Kumar Desikan, Nisheeth Srivastava, Tamara Winden, Tammie Lindquist, Heather Britt, Jaideep Srivastava
Early Prediction of Potentially Preventable Events in Ambulatory Care Sensitive Admissions from Clinical Data. 124 - Allison B. McCoy
Comparison of Association Rule Mining and Crowdsourcing for Automated Generation of a Problem-Medication Knowledge Base. 125 - Karen Truong, Mike Conway:
A Study on Studies: Exploring the Metadata Associated with dbGaP Studies. 126 - Olga V. Patterson
Identifying Provider Counseling Practices Using Natural Language Processing: Gout Example. 127 - Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado
Privacy-Preserving Biometric System for Secure Fingerprint Authentication. 128 - Behrang Asadi, Daniel M. Tartakovsky, Mano Ram Maurya, Shankar Subramaniam:
Doubly Penalized LASSO for Reconstruction of Biological Networks. 129 - Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado
SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO). 130 - Mei Liu, Michael E. Matheny
Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data. 131 - Emily Silgard, Melissa Tharp, Rutu Mulkar-Mehta:
Temporal Relation Extraction from Medical Discharge Summaries. 132 - Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. 133 - Nafise Barzigar, Aminmohammad Roozgard, Pramode K. Verma, Samuel Cheng:
Removing Mixture Noise from Medical Images Using Block Matching Filtering and Low-Rank Matrix Completion. 134 - Brian E. Chapman, Wei Wei, Wendy Webber Chapman
The Frequency of ConText Lexical Items in Diverse Medical Texts. 135 - Danielle L. Mowery
Does Domain Knowledge Matter for Assertion Annotation in Clinical Texts? 136 - Vanderson Silva, Fabiana S. Santana, Beatriz Stransky, Sandro J. de Souza:
Modelling the Effects of Genetic Changes in Tumour Progression. 137 - Xiaoqian Jiang, Shuang Wang, Zhanglong Ji, Lucila Ohno-Machado
A Randomized Response Model for Privacy-Preserving Data Dissemination. 138 - Seemeen Karimi, Xiaoqian Jiang, Pamela C. Cosman
Evaluation of Segmentation Algorithms in CT Scanning. 139 - Alan Calvitti, Neal Farber, Yunan Chen, Danielle Zuest, Lin Liu, Kristin Bell, Barbara Gray, Zia Agha:
Temporal Analysis of Physicians' EHR Workflow during Outpatient Visits. 140 - Do Kyoon Kim, Hyunjung Shin, Je-Gun Joung, Su-Yeon Lee, Ju Han Kim:
Intra-relation Reconstruction from Inter-relation: miRNA to Gene Expression. 141 - Richard Rauscher
Cloud Computing Considerations for Biomedical Applications. 142 - XiaoFeng Wang, Haixu Tang:
Privacy Protection in Sharing Personal Genome Sequencing Data. 143 - Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su:
A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. 144 - Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su
genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games. 145 - Aaron Mandel, Michael Kamerick, Douglas Berman, Lisa Dahm:
University of California Research eXchange (UCReX): A Federated Cohort Discovery System. 146 - Brian E. Chapman, Mona Wong, Claudiu Farcas, Patrick Reynolds:
Annio: A Web-Based Tool for Annotating Medical Images with Ontologies. 147 - Jiao Li, Ritu Khare, Zhiyong Lu:
Improving Online Access to Drug-Related Information. 148 - Eugenia R. McPeek Hinz, Lisa Bastarache, Joshua C. Denny:
A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing. 149 - Hariprasad Sampathkumar, Bo Luo
Mining Adverse Drug Side-Effects from Online Medical Forums. 150
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