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GCB 2001: Braunschweig, Germany
- Edgar Wingender:
Computer science and biology: Proceedings of the German Conference on Bioinformatics, GCB 2001, October 7-10, 2001, Braunschweig, Germany. German Research Center for Biotechnology 2001, ISBN 3-00-008114-3
Papers
- Masaru Tomita:
E-CELL Project: Towards Whole Cell Simulation. German Conference on Bioinformatics 2001: 1 - Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman:
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5 - Anatolij Potapov, Edgar Wingender:
Modeling the Architecture of Regulatory Networks. German Conference on Bioinformatics 2001: 6-10 - Franz-Josef Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber:
BioPath Visualization of Biochemical Pathways. German Conference on Bioinformatics 2001: 11-15 - Hongwu Ma, Xiaofeng Guo, Xue-Ming Zhao:
Pathway Analysis of Bacillus subtillis Metabolic Network Based on Genomic Information. German Conference on Bioinformatics 2001: 16-20 - John Reinitz:
Looking at functional genomics from inside the Drosophila blastoderm. German Conference on Bioinformatics 2001: 21 - Andreas Deutsch:
Modelling interacting cell systems in biology and medicine with cellular automata. German Conference on Bioinformatics 2001: 22-25 - Ingolf Sommer, Niklas von Öhsen, Alexander Zien, Ralf Zimmer, Thomas Lengauer:
Confidence Measures for Fold Recognition. German Conference on Bioinformatics 2001: 26-33 - Andreas Bohne, Martin Frank, Thomas Wetter, Claus-Wilhelm von der Lieth:
Glycosylation of Proteins: A Computer-Based Method for Rapid Exploration of Conformational Space of N-Glycans. German Conference on Bioinformatics 2001: 34-39 - Zhi-Ping Feng:
Predicting the Subcellular Location of a Protein. German Conference on Bioinformatics 2001: 44 - Zhou Yu, Tao Li, Jindong Zhao, Jingchu Luo:
PGAAS: A prokaryotic genome assembly assistant system. German Conference on Bioinformatics 2001: 45 - Takako Takai-Igarashi, Toshihisa Takagi:
Ontology and functional genomics. German Conference on Bioinformatics 2001: 46 - Jacob Köhler, Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources. German Conference on Bioinformatics 2001: 47-52 - Ernst Kretschmann, Rolf Apweiler:
Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl. German Conference on Bioinformatics 2001: 53-57 - Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
ProML - the Protein Markup Language for specification of protein sequences, structures and families. German Conference on Bioinformatics 2001: 58-67 - Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
Improving Fold Recognition of Protein Threading by Experimental Distance Constraints. German Conference on Bioinformatics 2001: 68-77 - Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer:
A new Method for Unification of Existing Protein Structure- and Sequence-Families. German Conference on Bioinformatics 2001: 78-84 - Martin Dugas, Claudia Schoch, Susanne Schnittger, Wolfgang Kern, Torsten Haferlach, Dorle Messerer, Karl Überla:
Impact of integrating clinical and genetic information. German Conference on Bioinformatics 2001: 85-88 - Thomas Werner:
Finding and decrypting of promoters contributes to the elucidation of gene function. German Conference on Bioinformatics 2001: 89 - Jorng-Tzong Horng, Hsien-Da Huang, Cho-Chun Huang, Cheng-Yan Kao:
Mining Putative Regulatory Elements in Gene Promoter Regions. German Conference on Bioinformatics 2001: 90-95 - Alexander E. Kel, Olga V. Kel-Margoulis, T. G. Ivanova, Edgar Wingender:
ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters. German Conference on Bioinformatics 2001: 96-101 - Rainer Spang, Carrie Blanchette, Harry Zuzan, Jeffrey R. Marks, Joseph Nevins, Mike West:
Prediction and uncertainty in the analysis of gene expression profiles. German Conference on Bioinformatics 2001: 102-111 - Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko:
Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations. German Conference on Bioinformatics 2001: 112-117 - Dirk Evers, Robert Giegerich:
Reducing the Conformation Space in RNA Structure Prediction. German Conference on Bioinformatics 2001: 118-124 - Ewan Birney:
Ensembl: Annotating metazoan genomes. German Conference on Bioinformatics 2001: 125 - Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130 - Oliver Rinner, Burkhard Morgenstern:
Gene prediction by comparative sequence analysis. German Conference on Bioinformatics 2001: 131-134 - Rolf Backofen, N. S. Narayanaswamy, Firas Swidan:
Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. German Conference on Bioinformatics 2001: 135-140
Posters
- Patrizio Arrigo, P. Scartezzini, A. Egeo, Pasquale Paolo Cardo:
AGeWa (Automatic Gene Walk): an automatic tool for ASO design. German Conference on Bioinformatics 2001: 141 - Constantin Bannert, Marc Rehmsmeier, Rainer Spang, Jens Stoye:
Sequence Database Search Using Jumping Alignments. German Conference on Bioinformatics 2001: 142 - Ania Barbasiewicz, Lin Liu, B. Franz Lang, Nelli Shimko, Gertraud Burger:
Building Organelle Genome Databases using an Object-Oriented Approach. German Conference on Bioinformatics 2001: 142-143 - Knut Behrendt, Andreas Politzer, Julio Saez-Rodriguez, Matthias Reuss, Klaus Mauch:
Topological Analysis and Visualisation of large Signalling Networks: The TGF-beta Signal Transductionin Eukaryotic Systems. German Conference on Bioinformatics 2001: 143-144 - Uta Bohnebeck, Tom Wetjen:
Effective Pre- and Post-Processing for the Determination of Highly Sensitive Oligonucleotidesto be Used on DNA Microarrays. German Conference on Bioinformatics 2001: 144-145 - Rüdiger Bräuning, Peter Ernst, Mechthild Falkenhahn, Karl-Heinz Glatting, Agnes Hotz-Wagenblatt, Mark van der Linden, Barbara Pardon, Coral del Val, Sándor Suhai:
The German EMBnet Node: GENIUSnet. German Conference on Bioinformatics 2001: 146-147 - Maria Brandl, Manfred S. Weiss, Andreas Jabs, Jürgen Sühnel, Rolf Hilgenfeld:
C-H...pi Interactions in Proteins: A Structural Bioinformatics Study. German Conference on Bioinformatics 2001: 147-148 - Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Rolf Apweiler:
IntEnz - The Enzyme Database in Oracle. German Conference on Bioinformatics 2001: 148-149 - Ellen Fricke, Sigrid Land, Stella Rotert, Dagmar Karas, Edgar Wingender:
Cytomer: A database on gene expression sources. German Conference on Bioinformatics 2001: 149-151 - Razif R. Gabdoulline, Aitor González, Rebecca C. Wade:
3D modeling of macromolecular structures and reactions in the context of genomes. German Conference on Bioinformatics 2001: 151-152 - Valérie Gailus-Durner, Rolf Gohla, Torsten Crass:
A Question Based Navigator for Exercising Distributed Bioinformatics Tasks. German Conference on Bioinformatics 2001: 152-155 - Änne Glass, Lothar Gierl:
Designing GENESYS - a software system for mining chip data. German Conference on Bioinformatics 2001: 155-157 - Ulrike Göbel, Steffi Gebauer-Jung, Thomas Wiehe:
A Program for the Construction of a Promoter Model From a Set of Upstream Sequences of Coregulated Genes. German Conference on Bioinformatics 2001: 157 - Ellen Gößling, Olga V. Kel-Margoulis, Alexander E. Kel, Edgar Wingender:
MATCHTM - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes. German Conference on Bioinformatics 2001: 158-161 - Sandra Götze, A. Knopp, Craig J. Benham, Stephen A. Krawetz, Jürgen Bode:
Biomathematical and in vitro analysis of destabilized regions in the interferon gene cluster. German Conference on Bioinformatics 2001: 161 - Ulrike Götze, Susanne Pistor, Claudia Choi, Mathias Krull, Frank Schacherer, Nico Voss, Edgar Wingender:
TRANSPATH - a database on signal transduction networks. German Conference on Bioinformatics 2001: 162-163 - Juergen Haas:
Flexible Web-Controlled Pipelining of Stand-Alone Windows Data Analysis Applications. German Conference on Bioinformatics 2001: 163-165 - K. Hafez, Jens G. Reich:
Modeling of the Human Lipoprotein Metabolism - metabolic fluxes and genetic variations involved in exchange and transfer processes. German Conference on Bioinformatics 2001: 166-167 - Jorng-Tzong Horng, Ching-Mei Lin, Bing-He Yang, Cheng-Yan Kao:
A Genetic Algorithm for Multiple Sequence Alignment. German Conference on Bioinformatics 2001: 167-170 - Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng:
Mining Combinations of Structural Motif from SSU 16 S Ribosomal RNA Secondary Structures. German Conference on Bioinformatics 2001: 170-173 - Johannes Hüsing, Michael Zeschnigk, Tanja Hölter, Karl-Heinz Jöckel:
Using expression arrays to investigate deletion of chromosomal strands. German Conference on Bioinformatics 2001: 173-175 - Hui-Chih Hung, Guang-Yaw Liu, Gu-Gang Chang:
Computer Data Fitting in the Equilibrium Protein Folding Process Involving Multiple Intermediates. German Conference on Bioinformatics 2001: 176-178 - Jochen Hurlebaus, Wolfgang Wiechert, Ralf Takors:
MMT - A Metabolic Modeling Tool for Metabolic Engineering. German Conference on Bioinformatics 2001: 178-182 - Dirk Husmeier, Frank Wright:
Approximate Bayesian Discrimination between Alternative DNA Mosaic Structures. German Conference on Bioinformatics 2001: 182-184 - Olga V. Kel-Margoulis, Igor Deineko, Ingmar Reuter, Edgar Wingender, Alexander E. Kel:
TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes. German Conference on Bioinformatics 2001: 185-187 - Nawaz Khan, Shahedur Rahman:
A Conceptual Object Model of Gene Mutation Data. German Conference on Bioinformatics 2001: 187-190 - Jan T. Kim:
Modelling the Organization of Flower Morphogenesis by Transcription Factor Networks Using Lindenmayer Systems. German Conference on Bioinformatics 2001: 190-191 - Jan T. Kim, Thomas Martinetz, Daniel Polani:
On the Effects of Transcription Factor Properties on the Information Content of Binding Sites. German Conference on Bioinformatics 2001: 192-194 - Steffen Klamt, Ernst Dieter Gilles:
FluxAnalyzer: A Graphical User Interface for Analyzing Structural Properties and Fluxes in Balanced Metabolic Networks. German Conference on Bioinformatics 2001: 194-197 - Dorothee-U. Kloos, Claudia Choi, Edgar Wingender:
The SMAD-TGF-beta SignallingNetwork: TRANSFAC meets TRANSPATH. German Conference on Bioinformatics 2001: 198-199 - A. Knopp, Sandra Götze, Craig J. Benham, Matthias Frisch, Stephen A. Krawetz, Jürgen Bode:
Analysis of biomathematically predicted Scaffold / Matrix Attached Regions (S/MARs) by three different approaches. German Conference on Bioinformatics 2001: 200 - Kerstin Koch, Frank Zöllner, Gerhard Sagerer:
Building a new Rotamer Library for Protein-Protein Docking using energy calculations and statistical approaches. German Conference on Bioinformatics 2001: 201-202 - Matthias Lange, Andreas Freier, Uwe Scholz, Andreas Stephanik:
A Computational Support for the Access to Integrated Molecular Biology Data. German Conference on Bioinformatics 2001: 203-205 - Wolfram Liebermeister:
Independent component analysis of gene expression data. German Conference on Bioinformatics 2001: 205-206 - Ines Liebich, Maik Christensen, Edgar Wingender:
ReAlSplice: A database on regulated alternative splicing. German Conference on Bioinformatics 2001: 206-207 - Wei Liu, Andy Woodward, Douglas B. Kell:
Compression of proteome gel images using complex wavelet transform. German Conference on Bioinformatics 2001: 207 - Holger Michael, S. Thiele, Edgar Wingender:
TRANSFAC®_YEAST. German Conference on Bioinformatics 2001: 208 - Steffen Möller, Marcus Bantscheff, Michael O. Glocker, Dirk Koczan, Peter Lorenz, Hans-Jürgen Thiesen:
Correlation of Gene Expression as Measured by Different Assays. German Conference on Bioinformatics 2001: 209 - Ferdinand Moldenhauer, Ionela Zevedei-Oancea, Stefan Schuster:
Pathway Analysis of Metabolic Networks: New version of METATOOL and convenient classification of metabolites. German Conference on Bioinformatics 2001: 210 - Arne Müller, Michael J. E. Sternberg:
Structural annotation of the human genome. German Conference on Bioinformatics 2001: 211-212 - Yuri L. Orlov, V. P. Filippov, Vladimir N. Potapov, Nikolay A. Kolchanov:
Construction of stochastic context trees for genetical texts. German Conference on Bioinformatics 2001: 212-215 - Yuri L. Orlov, Evgenii E. Vityaev, Oleg V. Vishnevsky, A. S. Belenok, Boris Kovalerchuk, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov:
Program "Gene Discovery" for Pattern Matching in Promoter Sequences. German Conference on Bioinformatics 2001: 215-217 - Jürgen Pleiss, Christian Gentner, Holger Scheib, Tanja Schulz, Rolf D. Schmid:
From sequence to function: a quantitative model of lipase enantioselectivity. German Conference on Bioinformatics 2001: 217 - Anatolij Potapov, Klaus Seidl, Maik Christensen, Volker Drewes, Frank Schacherer, Edgar Wingender:
The integrated TRANSFAC system as a basis for modeling the architecture of gene regulatory networks. German Conference on Bioinformatics 2001: 218 - Jan Reichert, K. Mehliss, Jürgen Sühnel:
The IMB Jena Image Library of Biological Macromolecules - New Features. German Conference on Bioinformatics 2001: 219 - Kai J. Runte, Henning Hermjakob, Rolf Apweiler:
Towards a New Curation Environment for the TrEMBL Database. German Conference on Bioinformatics 2001: 220 - Christoph Schneider, Maria Brandl, Michael Meyer, Jürgen Sühnel:
Water-Mediated Uracil-Cytosine Base Pairs in RNA - A Computational Study. German Conference on Bioinformatics 2001: 221 - Dietmar Schomburg, Ida Schomburg, Antje Chang, Oliver Hofmann, Christian Ebeling, F. Ehrentreich:
BRENDA a resource for Enzyme data and metabolic pathway information. German Conference on Bioinformatics 2001: 222 - Markus Schwehm:
Fast Stochastic Simulation of Metabolic Networks. German Conference on Bioinformatics 2001: 223-226 - Klaus Seidl, Edgar Wingender:
-PheGe- a novel concept for in-silico analyses of genotype/phenotype relations. German Conference on Bioinformatics 2001: 226-227 - J. Sun, Joop van den Heuvel, An-Ping Zeng:
Reconstruction of metabolic and regulatory networks of Klebsiella pneumoniae from genome data. German Conference on Bioinformatics 2001: 227-228 - Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. German Conference on Bioinformatics 2001: 228-231 - Ana Tereza Ribeiro de Vasconcelos, L. Gonzaga, Rangel C. Souza, D. Q. Mendes, Roger F. C. Paixão, R. Kersanach, M. Oliveira, S. M. Martins, Andrew J. G. Simpson:
A Tool for Automatic Genome Annotation. German Conference on Bioinformatics 2001: 231-232 - Martin Werber, Bernd Weisshaar:
F-Workbench: a database-driven environment for the analysis of transcription factors. German Conference on Bioinformatics 2001: 233 - Karin Wieligmann, Luis Felipe Pineda De Castro, Martin Zacharias:
Conformational preferences of SH2 domains in free and ligand-bound states studied by molecular dynamics simulations. German Conference on Bioinformatics 2001: 234 - Luzie U. Wingen, Jan T. Kim, Heinz Saedler, Koen Dekker:
ZIGIA-DB: A versatile database for handling complex functional genomic data of Arabidopsisthaliana. German Conference on Bioinformatics 2001: 234-235 - E. W. Wolski, Christoph K. Wierling, Thomas Kreitler, Szymon M. Kielbasa, U. Schneider, Johan Gobom, Hans Lehrach, Holger Eickhoff:
Visualization and analysis of gene expression data using freeware and GPL-Software. German Conference on Bioinformatics 2001: 236-237 - Li-Cheng Wu, Jorng-Tzong Horng, Feng-Mao Lin:
An Approach to Finding Short Tandem Repeats in Complete Genomes. German Conference on Bioinformatics 2001: 238-241 - Ionela Zevedei-Oancea, Stefan Schuster:
Treatment of multifunctional enzymesin metabolic pathway analysis. German Conference on Bioinformatics 2001: 241-242
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