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BIOSTEC BIOINFORMATICS 2012: Vilamoura, Algarve, Portugal
- Jan Schier, Carlos Manuel B. A. Correia, Ana L. N. Fred, Hugo Gamboa:
BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1 - 4 February, 2012. SciTePress 2012, ISBN 978-989-8425-90-4
Full Papers
- Christine Sinoquet, Raphaël Mourad, Philippe Leray:
Forests of Latent Tree Models for the Detection of Genetic Associations. BIOINFORMATICS 2012: 5-14 - Manish P. Kurhekar, Umesh A. Deshpande:
A Deterministic Model of Bone Marrow with Homeostatic Properties and with Steady Production of Differentiated Cells. BIOINFORMATICS 2012: 15-23 - Edite Figueiras, Rita Campos, Ricardo Oliveira, Luis F. Requicha Ferreira, Frits F. M. de Mul, Anne Humeau-Heurtier:
Laser Doppler Flowmeters Prototypes Validation using Monte Carlo Simulations. BIOINFORMATICS 2012: 24-33 - Anna A. Nilulova, Alexander V. Favorov, Vsevolod J. Makeev, Andrey A. Mironov:
A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure. BIOINFORMATICS 2012: 34-41 - Heorhiy Byelas, Martijn Dijkstra, Morris A. Swertz:
Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework. BIOINFORMATICS 2012: 42-50 - Pawel Blazej, Pawel Mackiewicz, Stanislaw Cebrat:
Simulation of Bacterial Genome Evolution under Replicational Mutational Pressures. BIOINFORMATICS 2012: 51-57 - Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré:
Genome Halving by Block Interchange. BIOINFORMATICS 2012: 58-65 - Markus E. Nebel, Anika Scheid:
A n2 RNA Secondary Structure Prediction Algorithm. BIOINFORMATICS 2012: 66-75 - Santiago Alonso-Quesada, Manuel de la Sen, Asier Ibeas:
A Vaccination Control Law based on Feedback Linearization Techniques for SEIR Epidemic Models. BIOINFORMATICS 2012: 76-85 - Fernando Izquierdo-Carrasco, Julien Gagneur, Alexandros Stamatakis:
Trading Running Time for Memory in Phylogenetic Likelihood Computations. BIOINFORMATICS 2012: 86-95 - Alexander Tsouknidas, Nikolaos Michailidis, Kleovoulos Anagnostidis, Antonios Lontos:
Dual-energy X-ray Absorptiometry as an Indicator for Fragility Fracture Risks of the Femoral Neck. BIOINFORMATICS 2012: 96-101 - Lubomir D. Antonov, Christian Andreetta, Thomas Hamelryck:
An Efficient Parallel GPU Evaluation of Small Angle X-ray Scattering Profiles. BIOINFORMATICS 2012: 102-108
Short Papers
- António dos Anjos, Bjarne Kjær Ersbøll, Faroq Al-Tam, Hamid Reza Shahbazkia:
Matching Two-dimensional Gel Electrophoresis' Spots. BIOINFORMATICS 2012: 111-117 - Oliver Bezuidt, Kingdom Mncube, Oleg N. Reva:
Application of Genome Linguistic Approaches for Identification of Genomic Island in Bacterial Genomes and Tracking down their Origins - Genome Linguistics to Visualize Horizontal Gene Exchange. BIOINFORMATICS 2012: 118-123 - Matej Lexa, Lucie Navrátilová, Karel Nejedlý, Marie Brázdová:
Prediction of Significant Cruciform Structures from Sequence in Topologically Constrained DNA - A Probabilistic Modelling Approach. BIOINFORMATICS 2012: 124-130 - Jyh-Jong Tsay, Shih-Chieh Su:
A Memetic Algorithm for Protein Structure Prediction based on the 2D Triangular Lattice Model. BIOINFORMATICS 2012: 131-136 - Eduardo Campos dos Santos, Bráulio Roberto Gonçalves Marinho Couto, Marcos Augusto dos Santos, Julio Cesar Dias Lopes:
Predicting New Human Drug Targets by using Feature Selection Techniques. BIOINFORMATICS 2012: 137-142 - Fábio Madeira, Ludwig Krippahl:
Pycoevol - A Python Workflow to Study Protein-protein Coevolution. BIOINFORMATICS 2012: 143-149 - Ramouna Fouladi, Emad Fatemizadeh, Seyed Shahriar Arab:
Inference of Gene Regulatory Networks by Extended Kalman Filtering using Gene Expression Time Series Data. BIOINFORMATICS 2012: 150-155 - Maysson Al-Haj Ibrahim, Sabah A. Jassim, Michael Anthony Cawthorne, Kenneth Langlands:
Integrating Pathway Enrichment and Gene Network Analysis Provides Accurate Disease Classification. BIOINFORMATICS 2012: 156-163 - Kartick Chandra Mondal, Nicolas Pasquier, Anirban Mukhopadhyay, Célia da Costa Pereira, Ujjwal Maulik, Andrea Tettamanzi:
Prediction of Protein Interactions on HIV-1-Human PPI Data using a Novel Closure-based Integrated Approach. BIOINFORMATICS 2012: 164-173 - Cody Ashby, Kun Wang, Carole L. Cramer, Xiuzhen Huang:
Study of Protein Structure Alignment Problem in Parameterized Computation. BIOINFORMATICS 2012: 174-181 - Charalampos S. Kouzinopoulos, Panagiotis D. Michailidis, Konstantinos G. Margaritis:
Performance Study of Parallel Hybrid Multiple Pattern Matching Algorithms for Biological Sequences. BIOINFORMATICS 2012: 182-187 - Trent Higgs, Bela Stantic, Tamjidul Hoque, Abdul Sattar:
Benefits of Genetic Algorithm Feature-based Resampling for Protein Structure Prediction. BIOINFORMATICS 2012: 188-194 - Philipp Rescheneder, Arndt von Haeseler, Fritz J. Sedlazeck:
MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data. BIOINFORMATICS 2012: 195-201 - Markus Heinonen, Niko Välimäki, Veli Mäkinen, Juho Rousu:
Efficient Path Kernels for Reaction Function Prediction. BIOINFORMATICS 2012: 202-207 - Vojtech Bystrý, Matej Lexa:
cswHMM: A Novel Context Switching Hidden Markov Model for Biological Sequence Analysis. BIOINFORMATICS 2012: 208-213 - Sebastian García-López, Jorge Alberto Jaramillo-Garzón, J. C. Higuita-Vásquez, César Germán Castellanos-Domínguez:
Wrapper and Filter Metrics for PSO-based Class Balance Applied to Protein Subcellular Localization. BIOINFORMATICS 2012: 214-219 - Cigdem Sevim Bayrak, Burak Erman:
Statistical Mechanics of Proteins in the Random Coil State. BIOINFORMATICS 2012: 220-225 - André Atanasio M. Almeida, Zanoni Dias:
Improvements to a Multiple Protein Sequence Alignment Tool. BIOINFORMATICS 2012: 226-233 - Ruben Acuña, Zoé Lacroix, Fayez Hadji, Jacques Chomilier, Nikolaos Papandreou:
Prediction of Chimeric Protein Fold. BIOINFORMATICS 2012: 234-239 - Ana Stanescu, Doina Caragea:
Semi-supervised Learning of Alternatively Spliced Exons using Expectation Maximization Type Approaches. BIOINFORMATICS 2012: 240-245 - Malgorzata Wanczyk, Pawel Blazej, Pawel Mackiewicz, Stanislaw Cebrat:
How to Deal with Small Open Reading Frames?. BIOINFORMATICS 2012: 246-250 - Italo Zoppis, Massimiliano Borsani, Erica Gianazza, Clizia Chinello, Francesco Rocco, Giancarlo Albo, André M. Deelder, Yuri E. M. van der Burgt, Fulvio Magni, Marco Antoniotti, Giancarlo Mauri:
Analysis of Correlation Structures in Renal Cell Carcinoma Patient Data. BIOINFORMATICS 2012: 251-256 - Alexander E. Nezhinsky, Esther Stoop, Astrid van der Sar, Fons J. Verbeek:
Numerical Analysis of Image based High Throughput Zebrafish Infection Screens - Matching Meaning with Data. BIOINFORMATICS 2012: 257-262 - Jennifer Hallinan, S. Park, Anil Wipat:
Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits. BIOINFORMATICS 2012: 263-268
Posters
- Giulia Menconi, Giovanni Battaglia, Roberto Grossi, Nadia Pisanti, Roberto Marangoni:
A Taste of Yeast Mobilomics. BIOINFORMATICS 2012: 271-274 - Sergio Torres-Sánchez, Manuel García Sánchez, Germán Arroyo, Nuria Medina-Medina, Rosana Montes-Soldado, Francisco Soler-Martínez, María M. Abad-Grau:
3D Visualization of Haplotype Risk Maps. BIOINFORMATICS 2012: 275-280 - Marco Franke, Klaus-Dieter Thoben, Rainer Söller:
Approach to Enable an Automatic Pre-processing of qRT-PCR - Analysis. BIOINFORMATICS 2012: 281-285 - András Hartmann, Susana Vinga, João Miranda Lemos:
Identification of Hiv-1 Dynamics - Estimating the Noise Model, Constant and Time-varying Parameters of Long-term Clinical Data. BIOINFORMATICS 2012: 286-289 - Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold:
Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology. BIOINFORMATICS 2012: 290-294 - Sandra M. Venske, Richard A. Gonçalves, Myriam Regattieri Delgado:
Differential Evolution to Multi-objective Protein Structure Prediction. BIOINFORMATICS 2012: 295-298 - Bich Hai Ho, Ngoc Tu Le, Tu Bao Ho:
Bayesian Network Analysis of Relationships between Nucleosome Dynamics and Transcriptional Regulatory Factors. BIOINFORMATICS 2012: 299-302 - Paolo Piro, Wafa Bel Haj Ali, Lydie Crescence, Oumelkheir Ferhat, Jacques Darcourt, Thierry Pourcher, Michel Barlaud:
Universal k-NN (UNN) Classification of Cell Images using Histograms of DoG Coefficients. BIOINFORMATICS 2012: 303-307 - Diogo Pratas, Armando J. Pinho, Sara P. Garcia:
Computation of the Normalized Compression Distance of DNA Sequences using a Mixture of Finite-context Models. BIOINFORMATICS 2012: 308-311 - Preetam Ghosh, Bhaswati Datta, Vijayaraghavan Rangachari:
Computational Predictions for the Nucleation Mass and Lag times Involved in Aβ42 Peptide Aggregation. BIOINFORMATICS 2012: 312-316 - Rafael S. Costa, Daniel Machado, Ana Rute Neves, Susana Vinga:
Multi-level Dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation. BIOINFORMATICS 2012: 317-321 - Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov:
Automated Regulon Content Prediction and Estimation of PWM Quality. BIOINFORMATICS 2012: 322-325 - Thanapat Kangkachit, Kitsana Waiyamai:
Fuzzy Concept Lattice-based Approach for Reactive Motifs Discovery. BIOINFORMATICS 2012: 326-330 - Francesco Abate, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Enrico Macii:
A Novel Analysis Flow for Fused Transcripts Discovery from Paired-end RNA-Seq Data. BIOINFORMATICS 2012: 331-334 - Massimo Natale, Alfonso Caiazzo, Enrico M. Bucci, Elisa Ficarra:
A Novel Gaussian Fitting Approach for 2D Gel Electrophoresis Saturated Protein Spots. BIOINFORMATICS 2012: 335-338 - Ardita Shkurti, Andrea Acquaviva, Elisa Ficarra, Mario Orsi, Enrico Macii:
Characterization of Coarse Grain Molecular Dynamic Simulation Performance on Graphic Processing Unit Architectures. BIOINFORMATICS 2012: 339-342 - Kirill Lassounski, Sahudy Montenegro González, Annabell Del Real Tamariz, Gabriel Lima de Oliveira:
PubMed Dataset: A Java Library for Automatic Construction of Evaluation Datasets. BIOINFORMATICS 2012: 343-346 - Jan Schier, Bohumil Kovár, Eduard Kocárek:
Automated Detection of Interphase and Metaphase Nuclei in the FISH Images. BIOINFORMATICS 2012: 347-350 - Gopi Chand Nutakki, Leyla Zhuhadar, Robert Wyatt:
Appearance based Disease Recognition of Human Brains. BIOINFORMATICS 2012: 351-355 - Byung-Cheol Kim, Sunghoon Kim:
Landscaping the Framework of Bio Research Project - Generation of the 3D Atlas for Drug Target Discovery. BIOINFORMATICS 2012: 356-359 - María M. Abad-Grau, Nuria Medina-Medina, Andrés R. Masegosa, Serafín Moral:
Haplotype-based Classifiers to Predict Individual Susceptibility to Complex Diseases - An Example for Multiple Sclerosis. BIOINFORMATICS 2012: 360-366
Special Session on Training in Bioinformatics
Full Papers
- Ronen Tal-Botzer, Rachel S. Levy-Drummer, Gidi Rechavi, Ron Unger:
Building Today the Future Cadre of Informatics-oriented Physicians - Lessons from a New Biomedical Informatics Curriculum for Medical Doctors. BIOINFORMATICS 2012: 371-377 - Gerald Lirk, Peter Kulczycki, Stefan Winkler, Jörg Zumbach:
A Web-based Introduction to Bioinformatics - Epistemological Beliefs in Bioinformatics. BIOINFORMATICS 2012: 378-385 - Frédérique Lisacek, Patrick Koks, Pascale Berthault, Grégoire Rossier, Guy Bottu, Jacques van Helden, Jean Sylvestre, Jean-Pierre Kraehenbuhl, Jack A. M. Leunissen:
eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources. BIOINFORMATICS 2012: 386-391
Short Papers
- Kristian Rother:
Exit Polls - Instant Feedback from Teaching Events and Conference Talks. BIOINFORMATICS 2012: 395-398
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