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3. APBC 2005: Singapore
- Yi-Ping Phoebe Chen, Limsoon Wong:
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore. Imperial College Press, London 2005, ISBN 1-86094-477-9 - Yi-Ping Phoebe Chen, Limsoon Wong:
Preface. - Siu-Ming Yiu, P. Y. Chan, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting, Prudence W. H. Wong:
Allowing mismatches in anchors for wholw genome alignment: Generation and effectiveness. 1-10 - Hon Nian Chua, Wing-Kin Sung:
A better gap penalty for pairwise SVM. 11-20 - Zi Huang, Xiaofang Zhou:
High dimensional indexing for protein structure matching using bowties. 21-30 - Greg Butler, Guang Wang, Yue Wang, Liqian Zou:
A graph database with visual queries for genomics. 31-40 - Kishori M. Konwar, Ion I. Mandoiu, Alexander Russell, Alexander A. Shvartsman:
Improved algorithms for multiplex PCR primer set selection with amplification length constraints. 41-50 - Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu:
Clique-based algorithms for protein threading with profiles and constraints. 51-64 - Shiou-Ling Wang, Chung-Ming Chen, Ming-Jing Hwang:
Classification of protein 3D folds by hidden Markov learning on sequences of structural alphabets. 65-72 - Jinbo Xu, Libo Yu, Ming Li:
Consensus fold recognition by predicted model quality. 73-83 - Rajkumar Bondugula, Ognen Duzlevski, Dong Xu:
Profiles and fuzzy K-nearest neighbor algorithm for protein secondary structure prediction. 85-94 - J. Feng, Laxmi Parida, Ruhong Zhou:
Protein folding trajectory analysis using patterned clusters. 95-104 - Emily W. Xu, Daniel G. Brown, Paul Kearney:
The use of functional domains to improve transmembrane protein topology prediction. 105-116 - Jian Guo, Yuanlie Lin, Zhirong Sun:
A novel method for protein subcellular localization: Combining residue-couple model and SVM. 117-129 - Mikael Bodén, John Hawkins:
Detecting residues in targeting peptides. 131-140 - Stefan Maetschke, Michael Towsey, Mikael Bodén:
BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. 141-150 - Kung-Hao Liang:
Cells In Silico (CIS): A biomedical simulation framework based on Markov random field. 151-160 - Zhuo Zhang, Suisheng Tang, See-Kiong Ng:
Toward discovering disease-specific gene networks from online literature. 161-169 - Hiroshi Matsuno, Shin-Ichi T. Inouye, Yasuki Okitsu, Yasushi Fujii, Satoru Miyano:
A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals. 171-180 - Jian Liu, Bin Ma, Ming Li:
PRIME: Peptide robust identification from MS/MS spectra. 181-190 - Kaibo Duan, Jagath C. Rajapakse:
SVM-RFE peak selection for cancer classification with mass spectrometry data. 191-200 - Xiuying Wang, David Dagan Feng:
Hybrid registration for two-dimensional gel protein images. 201-210 - Chao Shi, Lihui Chen:
Feature dimension reduction for microarray data analysis using locally linear embedding. 211-217 - Li Shen, Eng Chong Tan:
PLS and SVD based penalized logistic regression for cancer classification using microarray data. 219-228 - Tsun-Chen Lin, Ru-Sheng Liu, Shu-Yuan Chen, Chen-Chung Liu, Chien-Yu Chen:
Genetic algorithms and silhouette measures applied to microarray data classification. 229-238 - Sanguthevar Rajasekaran, Sudha Balla, Chun-Hsi Huang, Vishal Thapar, Michael R. Gryk, Mark W. Maciejewski, Martin R. Schiller:
Exact algorithms for motif search. 239-248 - Sanguthevar Rajasekaran, Sudha Balla, Chun-Hsi Huang:
Exact algorithms for planted motif challenge problems. 249-259 - Francis Y. L. Chin, Henry C. M. Leung:
Voting algorithms for discovering long motifs. 261-271 - Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
A highly scalable algorithm for the extraction of CIS-regulatory regions. 273-282 - Rajesh Chowdhary, R. Ayesha Ali, Vladimir B. Bajic:
Modeling 5' regions of histone genes using Bayesian networks. 283-288 - Hao-Teng Chang, Tan-Chi Fan, Margaret Dah-Tsyr Chang, Tun-Wen Pai, Bo-Han Su, Pei-Chih Wu:
Unique peptide prediction of RNase family sequences based on reinforced merging algorithms. 289-298 - Dimitris Papamichail, Steven Skiena, C. Van Der Lelie, S. R. McCorkle:
Bacterial population assay via k-mer analysis. 299-308 - Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Pak-Leong Chan, Jorng-Tzong Horng, Ming-Tat Ko:
A database to aid probe design for virus identification. 309-318 - Lei Huang, Yang Dai:
A support vector machine approach for prediction of T Cell epitopes. 319-328 - Gang Wu, Guohui Lin, Jia-Huai You, Xiaomeng Wu:
Faster solution to the maximum quartet consistency problem with constraint programming. 329-338 - Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung:
Inferring phylogenetic relationships avoiding forbidden rooted triplets. 339-348 - Lusheng Wang, Daming Zhu, Xiaowen Liu, Shaohan Ma:
An O(N2) algorithm for signed translocation problem. 349-358 - Haruki Nakamura:
Protein informatics towards integration of data grid and computing grid. 359-362 - Xin Chen, Jie Zheng, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang:
Computing the Assignment of Orthologous Genes via Genome Rearrangement. 363-378 - Sin Lam Tan, Vidhu Choudhary, Alan Christoffels, Byrappa Venkatesh, Vladimir B. Bajic:
Comparison of core promoters in Fugu rubripes and human. 379 - Santosh K. Mishra:
Trends in bioinformatics research and Singapore's role. 381
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