A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action (Q21203780)

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English	A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action	scientific article

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action (English)

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1 reference

based on heuristic

inferred from title

RNA interference

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based on heuristic

inferred from title

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5

object named as

Eugene V Koonin

author given names

Eugene V

author last names

Koonin

1 reference

Dimensions Publication ID

17 August 2022

Svetlana A. Shabalina

object named as

Svetlana A Shabalina

3

author given names

Svetlana A

author last names

Shabalina

1 reference

Dimensions Publication ID

17 August 2022

4

object named as

Yuri I Wolf

author given names

Yuri I

author last names

Wolf

1 reference

Dimensions Publication ID

17 August 2022

2

object named as

Nick V Grishin

author given names

Nick V

author last names

Grishin

1 reference

Dimensions Publication ID

17 August 2022

1

object named as

Kira S Makarova

author given names

Kira S

author last names

Makarova

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Dimensions Publication ID

17 August 2022

language of work or name

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publication date

2006

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1

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1

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7

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A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

1 reference

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Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance

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19 March 2017

Do orthologous gene phylogenies really support tree-thinking?

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19 March 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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19 March 2017

Genetic and functional diversification of small RNA pathways in plants

1 reference

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19 March 2017

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system

1 reference

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19 March 2017

The COG database: an updated version includes eukaryotes

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19 March 2017

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19 March 2017

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

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19 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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19 March 2017

Dali/FSSP classification of three-dimensional protein folds

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19 March 2017

Diversity and Function of Adaptive Immune Receptors in a Jawless Vertebrate

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19 March 2017

Genesis of Sindbis virus by in vivo recombination of nonreplicative RNA precursors

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19 March 2017

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

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19 March 2017

Further additions to MolScript version 1.4, including reading and contouring of electron-density maps

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19 March 2017

PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA

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19 March 2017

RNA interference

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19 March 2017

Micros for microbes: non-coding regulatory RNAs in bacteria

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19 March 2017

siRNA and miRNA: an insight into RISCs

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19 March 2017

The small RNA profile during Drosophila melanogaster development

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19 March 2017

Construction of phylogenetic trees

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7 April 2017

Ribo-gnome: the big world of small RNAs

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7 April 2017

Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1462988

7 April 2017

Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1462988

7 April 2017

The small RNA regulators of Escherichia coli: roles and mechanisms*

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7 April 2017

BLAST: at the core of a powerful and diverse set of sequence analysis tools

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7 April 2017

MicroRNAs and other tiny endogenous RNAs in C. elegans

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7 April 2017

Identification of genes that are associated with DNA repeats in prokaryotes

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7 April 2017

On the role of RNA amplification in dsRNA-triggered gene silencing

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7 April 2017

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7 April 2017

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

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7 April 2017

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7 April 2017

Information content of binding sites on nucleotide sequences

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7 April 2017

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

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7 April 2017

Dicing and slicing: the core machinery of the RNA interference pathway

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12 September 2017

RNAi: the nuts and bolts of the RISC machine

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1462988

12 September 2017

Silence from within: endogenous siRNAs and miRNAs.

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12 September 2017

The PIN-domain toxin-antitoxin array in mycobacteria

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12 September 2017

Here a virus, there a virus, everywhere the same virus?

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12 September 2017

Viral metagenomics

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12 September 2017

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12 September 2017

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

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12 September 2017

Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

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12 September 2017

Assembly and function of RNA silencing complexes

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12 September 2017

A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase

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12 September 2017

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

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12 September 2017

Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement

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12 September 2017

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12 September 2017

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12 September 2017

RNAi: an ever-growing puzzle

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12 September 2017

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12 September 2017

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12 September 2017

The rest is silence.

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12 September 2017

Identification of homology in protein structure classification.

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12 September 2017

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12 September 2017

RNA-triggered gene silencing

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12 September 2017

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

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12 September 2017

Threading a database of protein cores

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12 September 2017

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12 September 2017

Slicer function of Drosophila Argonautes and its involvement in RISC formation

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27 September 2017

A novel nuclease-ATPase (Nar71) from archaea is part of a proposed thermophilic DNA repair system

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27 September 2017

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30 May 2018

Mechanism of transduction by retroviruses

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30 May 2018

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29 November 2018

Nonreplicative homologous RNA recombination: promiscuous joining of RNA pieces?

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29 November 2018

RNAi as random degradative PCR: siRNA primers convert mRNA into dsRNAs that are degraded to generate new siRNAs.

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29 November 2018

PIN domains in nonsense-mediated mRNA decay and RNAi

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29 November 2018

Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria.

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29 November 2018

EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans

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29 November 2018

Degradation pathway of CopA, the antisense RNA that controls replication of plasmid R1.

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29 November 2018

The role of RNA molecules in transduction of the proto-oncogene c-fps

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29 November 2018

Retroviral recombination: what drives the switch?

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12 December 2020

based on heuristic

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On the maximum likelihood method in molecular phylogenetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/16545108

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1745-6150-1-7

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Consolidated OpenCitations Corpus – April 2017

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Consolidated OpenCitations Corpus – April 2017

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Consolidated OpenCitations Corpus – April 2017

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