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Central Dogma

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Central Dogma

Review question 1
• In what direction is RNA polymerized?
• N to C
• 3 to 5
• 3' to 5'
• 5' to 3'
Review question 2
• True or False: More than one codon typically
encodes each amino acid.
• True
• False
Review question 3
• Where does translation begin, as indicated
on the mRNA transcript?
• terminator
• start codon
• transcription start site
• promoter
Review question 4
• If the following were a complete mRNA,
which codon would be recognized as the stop
codon? 
5' UAAUGCUGACUAGUUAAGCCCGAGCGAA-3'
• UAA
• UGA
• UAG
Review question 5
Review question 6
Learning objectives
• What is the central dogma?
• How is an RNA chain synthesized?
• How is transcription /translation initiated,
elongated and terminated?
Watson &Crick
• Solving DNA three-dimensional structure: does
not end.
• DNA is the hereditary molecule of the cell,
they reasoned that the sequence of
nucleotides in the molecule must function as
a code, able to direct the synthesis of proteins

DNA ---- ? -------- PROTEINS


????????How DNA can direct the synthesis of
proteins that are made exclusively in the cell’s
cytoplasm
• A candidate for
this information
carrier was
ribonucleic acid –
RNA that found
mostly in the
cell’s cytoplasm
• DNA &RNA use the same nitrogenous
bases except that DNA uses thymine,
whereas RNA uses uracil
• Uracil can hydrogen bond with adenine
just like thymine
• DNA is usually a double-stranded
molecule. RNA is usually single-stranded
??????????How did the amino acids interact
with the carrier RNA?
• There must be adaptor molecules; in fact there
must be 20 different adaptors, one for each
amino acid.
• Har Khorana and Nirenberg figured out how the
nucleotide language of mRNA is “translated”
into the amino acid language of proteins.
• Three nucleotides form a “codon” – an mRNA
word that specifies one amino acid.
• A codon made from only one or two
nucleotides would not produce enough
combinations (words) to code for all 20 of the
known amino acids.
• A three-nucleotide codon produces 64
combinations.
• This would produce a redundant code where
several different codons specify the same
amino acid.
• They made synthetic mRNA
composed entirely of uracil,
then added this poly-U to the
cell-free extract.
• When they examined the
products produced in this cell-
free system, they found
polypeptides composed
entirely of the amino acid
phenylalanine (PHE)
• From this result, they concluded that a
sequence of three uracils – UUU- must code
for phenylalanine -> determined one of the 64
triplet codons
• Matthaei and Nirenberg
tried other polynucleotide
chains. Poly –C made a
proline (PRO) chain;
• Poly-A made a lysine (LYS)
chain
• No protein was made with
the poly –G chain
• Using RNA templates containing different
nucleotide combinations. They assigned
amino acids to about 50 triplet codons
• This is genetic code table
• To find a specific codon, look down the left
hand side for the first letter of the codon. For
the second letter, look across the table. For
the last letter, look down the right hand side
of the table.
• The codon C G A codes for the amino acid
arginine (ARG).
• Phil Leder help Nirenberg with
the rest of the genetic code.
• Some of the codons were hard
to decipher, because they
could not establish their order
biochemically.
• For example: a triplet with
two Gs and one C could be in
the order CGG or GCG or GGC
• They used the activation of tRNA to
solve this problem.
• tRNA is the molecule that carries amino
acids to the ribosomes for protein
synthesis.
• tRNA is single stranded, stretches of
complementary nucleotides hydrogen
bond to form short double-stranded
regions, which bend the tRNA into a
characteristic cloverleaf shape
• At a position on one of the
leaves, a sequence of three
nucleotides forms an anti-
codon, which base pairs with
a specific mRNA codon.
-> there is a different tRNA
molecule corresponding to each
mRNA codon
• tRNA becomes activated when the amino
acid binds to the tRNA’s stem.
• They found the translation
starts with a specific codon
AUG – the only unique codon –
and there are stop codons that
end translation.
• Within the nucleus, the DNA
code is transcribed into a
complementary mRNA molecule
• The mRNA enters the cytoplasm, where it
associates with a ribosome. The mRNA code
is then translated into a polypeptide chain
• The codon AUG signals the
start of translation.
• An activated tRNA ferries
the first amino acid –
methionine – to the
ribosome.
• The tRNA anti-codon binds
to the AUG codon on the
mRNA
• The whole complex
shiffts, and the next codon
is read by another tRNA
• As two amino acids are held in position, a
peptide bond is formed between them. The
second tRNA accepts the growing protein
chain, and the methionine tRNA is released
• The process is repeated until stop codon is
encountered
• When stop codon is reached,
translation is finished.
• Stop codon do not have
matching tRNAs
• The ribosome disassembles
to be reused for translating
another mRNA and one
complete peptide chain is
released
Genetic code
Keynote
• Transcription is the process of transferring the genetic information
in DNA into RNA base sequences. The DNA unwinds in a short
region next to a gene, and an RNA polymerase catalyzes the
synthesis of an RNA molecule in the direction along the template
strand of the DNA. Only one strand of the double stranded DNA is
transcribed into an RNA molecule.
• Translation is a complicated process requiring many RNAs, protein
factors, and energy. The AUG (methionine) initiator codon signals
the start of translation in prokaryotes and eukaryotes. Elongation
proceeds when a peptide bond forms between the amino acid
attached to the tRNA in the A site of the ribosome and the growing
polypeptide attached to the tRNA in the P site. Translocation occurs
when the now-uncharged tRNA in the P site is released from the
ribosome and the ribosome moves one codon down the mRNA.
Termination occurs as a result of the interaction of a protein release
factor with a stop codon.

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