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Quaternary Structure of Proteins

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QUATERNAR

Y EJORANGO,
ESTOCONING,
STRUCTURES PARDILLO, PINILI

IN PROTEIN
QUATERNARY
STRUCTURES
SOME PROTEINS ARE
MADE UP OF MULTIPLE
POLYPEPTIDE CHAINS,
ALSO KNOWN AS SUBUNITS
WHAT HOLDS
THEM TOGETHER?

 IN GENERAL, THE SAME


TYPES OF INTERACTIONS
THAT CONTRIBUTE TO
TERTIARY STRUCTURE
ALSO HOLD THE
SUBUNITS TOGETHER TO
GIVE QUATERNARY
STRUCTURE.
IONIC BONDS
 SOME AMINO ACIDS HAVE A
CHARGED SIDE-CHAIN,
WHICH IS EITHER
NEGATIVE OR POSITIVE.
NEGATIVELY CHARGED
SIDE-CHAINS ARE
ATTRACTED TO POSITIVELY
CHARGED SIDE-CHAINS,
WHILE BEING REPELLED BY
ANOTHER NEGATIVELY
CHARGED SIDE-CHAINS.
WHEN TWO OPPOSITE
CHARGED CHAINS COME
TOGETHER, THEY FORM
WHAT IS CALLED A “SALT
BRIDGE”.
VAN DER WAALS FORCE

 VAN DER WAALS FORCES ARE ALSO


SIMILAR TO ELECTROSTATIC BONDS. THE  ATTRACTIONS CAN OCCUR BETWEEN ANY
FORMATION OF VAN DER WAALS FORCES TWO OR MORE MOLECULES AND ARE
DEPENDS ON THE SHAPE OF THE SIDE- DEPENDENT ON SLIGHT FLUCTUATIONS OF
CHAIN; IF THE ATOMS WITHIN THE SIDE- THE ELECTRON DENSITIES, WHICH ARE
CHAINS OF NEIGHBORING AMINO ACIDS NOT ALWAYS SYMMETRICAL AROUND AN
FIT WELL, THEN VAN DER WAALS FORCE IS ATOM.
FORMED.
VAN DER WAALS FORCE
 WHEN AN OH GROUP COMES ACROSS ANOTHER ATOM WITH
A SLIGHTLY NEGATIVE CHARGE, SUCH AS OXYGEN, THE
HYDROGEN FROM THE OH GROUP REACHES OUT TO THE
HYDROGEN BONDS OXYGEN ATOM AND FORMS A BOND. THIS IS KNOWN AS A
HYDROGEN BOND AND OCCURS BETWEEN AMINO ACIDS
WHICH HAVE WHAT IS CALLED A POLAR SIDE-CHAIN.
DISULFIDE BONDS
 DISULFIDE BONDS ARE
FORMED BETWEEN TWO
SULFUR (SH) ATOMS,
WHICH ARE FOUND IN
THE SIDE-CHAIN OF THE
AMINO ACID CYSTEINE.
WHEN TWO CYSTEINES
ARE BROUGHT INTO
CLOSE PROXIMITY IN
THE TERTIARY
STRUCTURE, AN ENZYME
CALLED “PROTEIN
DISULFIDE ISOMERASE”
FORMS A DISULFIDE
BOND BETWEEN THE
TWO SH GROUPS.
HYDROPHOBIC
INTERACTIONS
 SOME AMINO ACIDS HAVE
SIDE-CHAINS WHICH REPEL
WATER. THESE AMINO
ACIDS WITH HYDROPHOBIC
SIDE-CHAINS ARE OFTEN
FOUND ON THE INSIDE OF
PROTEINS, AND DUE TO THE
HYDROPHOBIC NATURE OF
THESE AMINO ACIDS THEY
INTERACT WITH ONE
ANOTHER BY WHAT IS
CALLED HYDROPHOBIC
“INTERACTIONS”.
STRUCTURES & FUNCTION

FIBROUS STRUCTURE GLOBULAR STRUCTURE

 HAS A STRONG MECHANICAL STRENGTH  SERVE AS TRANSPORT PROTEINS,

 USUALLY MAKES UP MAJOR COMPONENTS REGULATORY PROTEINS, AND ENZYMES


OF CELLS  SPHERICAL IN SHAPE

 ELONGATED AND STRAND-LIKE  E.G. HEMOGLOBIN, MYOGLOBIN

 E.G. KERATIN, COLLAGEN


FIBROUS VS GLOBULAR
CONJUGATED
PROTEINS
• NON-PROTEIN GROUPS
CALLED PROSTHETIC
GROUPS MAY ALSO BE
ASSOCIATED WITH
POLYPEPTIDE CHAINS
• POLYPEPTIDE CHAIN +
PROSTHETIC GROUP =
CONJUGATED PROTEIN
HEME
GROUP
 PROSTHETIC GROUP OF
A PROTOPORPHYRIN
RING AND A CENTRAL
IRON ATOM
 THEY HAVE THE ABILITY
TO REVERSIBLY BIND
WITH OXYGEN DUE TO
THEIR IRON
HEMOGLOBIN
 FOUND IN RED BLOOD
CELLS
 TRANSPORTS OXYGEN

 IT IS A TETRAMER I.E IT
HAS 4 SUBUNITS: 2
ALPHA, 2 BETA
 EACH SUBUNIT HAS A
HEME GROUP
MYOGLOBIN
 FOUND IN SKELETAL
MUSCLE
 OXYGEN STORAGE

 MONOMER

 HAS GREATER ATTRACTION


FOR OXYGEN THAN
HEMOGLOBIN WHICH
ALLOWS EFFICIENT
TRANSFER OF OXYGEN
FROM BLOODSTREAM TO
BODY CELLS
SOURCES

 Denniston, K., Topping, J., & Dorr, Q. D. (2016). General, Organic, and Biochemistry [E-book]. In General, Organic,
and Biochemistry (9th ed., p. 646). McGraw-Hill Education.
 Yokoyama, M., PhD. (2019, January 25). Intermolecular Forces in Tertiary Protein Structure. News-Medical.Net.
https://www.news-medical.net/life-sciences/Intermolecular-Forces-in-Tertiary-Protein-Structure.aspx

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