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Jorge E. Corredor
Coastal Ocean
Observing
Platforms, Sensors and Systems
Coastal Ocean Observing
Frontispiece: Tropical Ocean Observing
Art courtesy of Mr. Mark Sabino, member of the CariCOOS Board of Directors
Jorge E. Corredor
This Springer imprint is published by the registered company Springer International Publishing AG
part of Springer Nature.
The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland
To past and present members of the
Caribbean Coastal Ocean Observing System
(CariCOOS) whose collective knowledge I
hope to here accurately reflect.
To the United States Integrated Ocean
Observing System (US IOOS) and its
predecessor OCEAN.US, institutions that
provided funding and guidance without
which CariCOOS would have been
impossible.
To members of the other ten fellow US IOOS
Coastal Ocean Observing Systems who
generously provided support, advice, and
encouragement in the establishment of
CariCOOS.
Preface
This book arises from material initially compiled for a practical graduate field course
on oceanographic techniques taught at the University of Puerto Rico, Mayagüez
Campus (UPRM), Department of Marine Sciences at La Parguera Puerto Rico over
a period of 35 years. Oceanographic techniques encompass practices developed to
observe ocean properties and obtain experimental samples, practices which are in
large part remote since instrument deployment is performed mostly from vessels at
sea. The course included the operation and maintenance of oceanographic probes
provided with a variety of electronic and electro-optical sensors, and of an equally
wide variety of instruments deployed for remote sampling of water, sediment, and
plankton. Data collection and processing from instrument casts as well as handling
and preservation of sample obtained with the various collection devices were
included in the curriculum. Concurrent graduate courses on theoretical and practical
aspects of chemical oceanography and marine pollution provided material regarding
electrochemical sensors, their design, operation, and limitations.
In 1993, support became available for the implementation of an oceanic time
series observing effort off the south coast of Puerto Rico. The Caribbean Time
Series (CaTS) was occupied at monthly intervals aboard various oceanographic ves-
sels through the year 2006. Vertical profiles of physical and biogeochemical water
column features were obtained using instruments here described beginning with
casts to 200 m depth and eventually reaching depths of 3000 m. The CaTS effort
provided a seagoing laboratory for these courses and spurred periodic updates as
new instruments and techniques became available.
Support for a Caribbean Coastal Ocean Observing System (CariCOOS) for
Puerto Rico and the United States Virgin Islands (PR and USVI) within a nation-
wide Integrated United States Ocean Observing System (US IOOS) beginning
around 2004 provided unprecedented autonomous observing capabilities. Through
the efforts of researchers at the University of Puerto Rico and the University of the
Virgin Islands, a multicomponent coastal ocean observing system was planned,
designed, and implemented and is now operational. The reward has been a wealth
vii
viii Preface
xi
xii Contents
Afterword���������������������������������������������������������������������������������������������������������� 151
Index������������������������������������������������������������������������������������������������������������������ 155
Chapter 1
Introduction to Coastal Ocean Observing
The advent of electro-optical devices has revolutionized the capability for detecting
and measuring a wide range of chemical and biological variables and processes.
These advances have now reached the point of allowing sustained, widely dis-
tributed collection of environmental data by compact, autonomous instrument sys-
tems. Wide band dual communications allow remote operation of these networks
with ever-increasing capabilities. Hart and Martinez (2006) define such integrated
systems as environmental sensor networks where these capabilities are integrated
into systems providing multilayered, data-dense views of spatial and temporal vari-
ability of environmental conditions.
In the field of ocean science, expeditionary oceanographic research aboard
manned vessels provided an important testbed for the design and development of
such instrument systems. Today, instruments recording temperature and salinity and
other variables routinely operate at data sampling rates up to 24 Hz. Vertically oper-
ated profiling instruments known as CTDs (for conductivity (C), temperature (T)
and depth (D)), descending at rates up to 60 m.min−1 thus achieve sampling densi-
ties up to 24 data points per meter or 120,000 data points for a full ocean depth cast
to 5000 m.
Instrumental Data: Then and Now
Fifty years ago a vertical hydrographic wire cast from a ship sampling to full ocean
depth would have sampled 24 data points using reversing mercury thermometers
for temperature measurement mounted on bottle samplers for subsequent laboratory
salinity and oxygen analyses making a total of 86 data records including depth,
derived from temperature anomalies of protected versus non-protected thermometer
pairs. Bottles were affixed sequentially to a weighted wire rope and then tripped by
means of bronze messengers (weights sequentially traveling down the wire rope) to
invert the thermometers and simultaneously trip the bottle to capture a water sam-
ple. Paired thermometers were read at sea (through a handheld magnifying glass)
upon retrieval of the array and salinity was determined with bench salinometers in
the laboratory. Dissolved oxygen and a few other variables were measured in the
laboratory using wet chemical techniques. The same cast today, performed with
sensor-based electronic instrumentation, obtains 5000 times more coupled depth,
temperature, salinity and oxygen data points with real-time graphical representa-
tion, electronic readout, and digital data recording. Data density may be increased
severalfold by addition of various optical, bio-optical, and opto-chemical sensor
devices to the instrument package.
CTD and shipboard flow-through systems have evolved into multiparameter data
acquisition systems incorporating a variety of optical, chemical, and biophysical
sensors. Many current profiling instrument packages accommodate modular sensors
interchangeable in the field as may be required in addition to the traditional pres-
sure, temperature, and conductivity sensors. Many versions of these instruments,
first developed for cable deployment, are now employed in shipboard or s hore-based
infrastructure using pumped flow-through sensor systems. Flow-through sensors,
1 Introduction to Coastal Ocean Observing 3
References
Dore JE, Lukas R, Sadler DW, Church MJ, Karl DM. Physical and biogeochemical modulation of
ocean acidification in the central North Pacific. PNAS. 2009;106:12235–40.
Edwards CA, Moore AM, Hoteit I, Cornuelle BD. Regional ocean data assimilation. Annu Rev
Mar Sci. 2015;7:21–42. https://doi.org/10.1146/annurev-marine-010814-015821. Epub 2014
Aug 6.
Hart JK, Martinez K. Environmental sensor networks: a revolution in the earth system science?
Earth Sci Rev. 2006;78:177–91.
Chapter 2
Electronic Sensors and Instruments
for Coastal Ocean Observing
Well calibrated, many of these variables can be reported on the scales of the
International System for Weights and Measures (SI for the French Système interna-
tional d’unités) which govern these fundamental measurements assuring wide-
spread consensus on data accuracy and precision (Bureau International des Poids et
Mesures 2006).
An exponential increase in capability of underwater instrumentation has been
fueled by the advent of modern electronics. Electronic signal detection and amplifi-
cation technology was originally developed for radio communications and artillery
ranging and detection during the Second World War. Vacuum cathode ray devices
that amplify and modulate electronic signals permitted sending and receiving atmo-
spheric radio signals and, subsequently, underwater acoustic signals. Modern
devices incorporating solid state technology far surpass the performance and reli-
ability of the original vacuum tube and have allowed miniaturization of the compo-
nents and freedom from the fragile, failure prone vacuum tube technology of
50 years ago. Solid state transistors, at the heart of all electronic instruments today,
are composed of semiconductor mineral phases of materials such as silicon and
germanium. Diodes (bipolar transistors) consist of a monolithic physical junctions
of two such mineral formulations displaying opposite negative (N) or positive (P)
electronic properties. Electrical leads to the source (positive) and from the drain
(negative) connect the device to the operating circuit. Diodes permit current flow in
only one direction, constituting effective electronic on/off valves that rectify oscilla-
tory alternating current to flow in only one direction. Signal amplification transis-
tors known as bipolar junction transistors incorporated an additional mineral phase
gate interposed between the diode elements yielding the configurations PNP or
NPN. These electronic valves, analogous to the triode vacuum tubes of (recent)
yore, allow amplification of the low power signal through modulation imparted to a
carrier wave. The low power signal energizes the central gate element in a pattern
dictated by the sensor and transmitted across the assembly to the drain element both
as amplified by the source and as modulated by the gate. Such power transistors are
recognizable in electronic circuits as those attached to large fluted metal heat sinks.
Power transistor heat loss however constitutes a limiting factor for the operation of
remote sensors. In practice, these transistors are incorporated into integrated ampli-
fication circuits such as the well-known analog operational amplifier. External oscil-
lator circuits feeding op/amps provide frequency modulation. Since the signal from
any electronic transducer including acoustic, radio, microwave, and optical emis-
sion may be similarly modulated, the application of solid state technology using
electronic sensors is extended to many practical ocean observing applications here
discussed. In addition to primary data sensing, separate circuitry is required for
electronic data conditioning and transmission (Chap. 5).
Today diode- and triode-like logic gate transistors in integrated circuits (IC) with
dimensions down to 45 nm can have transistor counts of more than 109 per IC. The
metal oxide semiconductor field effect transistor (MOSFET) and similar designs have
proved especially suitable for incorporation into these circuits that are fabricated
through photolithographic procedures. In contrast to the original monolithic double
junction transistors, incorporating three fused mineral phases (NPN and PNP), a sin-
gle mineral phase can serve as source and drain. A constriction at the virtual gate is
2.2 Electronic Sensors and Instruments for Ocean Observing 9
overlain by the field effect element where signal charge accumulates or depletes
varying resistance across the gate thus modulating the higher power source current.
Paired complementary MOSFET units of opposite electronic configuration
constitute the so-called cMOS, fast logic switches that draw current only during the
switching operation minimizing energy consumption. Integrated circuits are now used
to condition power for sensor energization, and instrument detection circuitry, to gener-
ate and modulate active electromagnetic or acoustic probe signals and to generate and
modulate radio frequency or microwave communication signals. Proton-ion selective
MOSFET triodes are now integrated into instruments capable of precise, continuous
remote pH measurement. Junction photodiodes, semiconductor PN junctions sensitive
to light, have allowed the design and construction of a wide variety of light-sensing
optoelectronic devices for optical applications. Silicon photodiodes perform best in the
visible region (400–700 nm), while SiC formulations are used for near UV detection
(200–400 nm) and InGaAs alloys are used for the near IR band (>700 nm).
The following sections of this chapter are devoted to detailed description of the
principles of operation of a wide variety of environmental transducers applicable to
ocean observing and to the specific capabilities of various commercially available
instruments (referred to occasionally as sensors) operating on these principles.
Examples of basic transducers as well as circuitry, power requirements and endur-
ance of typical instruments are discussed. Sensors are categorized according to dis-
cipline. Instruments measuring physical phenomena including temperate, pressure,
winds, waves, tides, and ocean currents are discussed first followed by instruments
targeting chemical and biogeochemical variables.
The advanced user is directed to the online publications of the nonprofit US-based
Alliance for Coastal Technologies (ACT) http://www.act-us.info/ accessed
11/16/2017) for further reference to the subject matter discussed below. The mis-
sion of ACT is the evaluation of commercially available sensors for coastal ocean
observing. In fulfilling this mission ACT has developed stringent protocols for
sensor testing under a wide variety of environmental conditions. Invaluable techni-
cal reference is provided by ACT Workshop Reports, Sensor Evaluations, and
Technologies Database.
Temperature (T) is perhaps the most widely measured environmental property since,
together with pressure, it governs such fundamental properties as the physical state
of water and the electrical conductivity of ions in seawater. An intensive property, T
depends not only on the heat content of the recipient matter but also its heat capacity
which can vary widely. The atmospheric thermosphere at altitudes of 100–1000 km
with temperatures ranging beyond 2000 °C is in this sense a rather paradoxical
example. Its high temperature is due to the absorption of high energy solar radiation
by resident gases but the sparsity of these same gases in the rarified atmosphere
results in its remarkably low heat content.
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6ξd2
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