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Contents
The transcription product and how it is processed 62 Signal transduction cascades: The response
Noncoding regulatory elements: The on, off, and to inducers 116
dimmer switches of a gene 62 Fibroblast growth factors and the RTK pathway 116
Mechanisms of Differential Gene Expression: FGFs and the JAK-STAT pathway 118
Transcription 67 The Hedgehog family 119
Epigenetic modification: Modulating access to genes 67 The Wnt family 123
Transcription factors regulate gene transcription 72 The TGF-β superfamily 126
The gene regulatory network: Defining Other paracrine factors 127
an individual cell 78 The Cell Biology of Paracrine Signaling 132
Mechanisms of Differential Gene Expression: Focal membrane protrusions as signaling sources 134
Pre-messenger RNA Processing 79
Juxtacrine Signaling for Cell Identity 137
Creating families of proteins through alternative
The Notch pathway: Juxtaposed ligands and receptors
pre-mRNA splicing 80
for pattern formation 137
Mechanisms of Differential Gene Expression: Paracrine and juxtacrine signaling in coordination:
mRNA Translation 82 Vulval induction in C. elegans 138
Differential mRNA longevity 82
Stored oocyte mRNAs: Selective inhibition of
mRNA translation 83
Ribosomal selectivity: Selective activation of 5
mRNA translation 84
microRNAs: Specific regulation of mRNA translation
and transcription 84 Stem Cells
Control of RNA expression by cytoplasmic Their Potential and Their Niches 143
localization 87
Mechanisms of Differential Gene Expression: The Stem Cell Concept 144
Posttranslational Protein Modification 88 Division and self-renewal 144
Potency defines a stem cell 145
Coda 95
Stem Cell Regulation 146
Pluripotent Cells in the Embryo 148
4 Meristem cells of the Arabidopsis thaliana embryo
and beyond 148
Cells of the inner cell mass in the mouse embryo 151
Cell-to-Cell Communication Adult Stem Cell Niches in Animals 153
Mechanisms of Morphogenesis 99 Stem cells fueling germ cell development in
the Drosophila ovary 153
A Primer on Cell-to-Cell Communication 100 Adult Neural Stem Cell Niche of the V-SVZ 155
Adhesion and Sorting: Juxtacrine Signaling and The neural stem cell niche of the V-SVZ 155
the Physics of Morphogenesis 101
The Adult Intestinal Stem Cell Niche 160
Differential cell affinity 101
Clonal renewal in the crypt 161
The thermodynamic model of cell interactions 103
Cadherins and cell adhesion 103 Stem Cells Fueling the Diverse Cell Lineages
in Adult Blood 162
The Extracellular Matrix as a Source of The hematopoietic stem cell niche 163
Developmental Signals 106
Integrins: Receptors for extracellular matrix The Mesenchymal Stem Cell: Supporting a Variety
molecules 108 of Adult Tissues 165
Regulation of MSC development 166
The Epithelial-Mesenchymal Transition 108
The Human Model System to Study Development
Cell Signaling 109 and Disease 167
Induction and competence 109 Pluripotent stem cells in the lab 167
Paracrine Factors: Inducer Molecules 114 Induced pluripotent stem cells 170
Morphogen gradients 114 Organoids: Studying human organogenesis
in a culture dish 173
Contents ix
6 7
Sex Determination and Gametogenesis 179 Fertilization Beginning a New Organism 215
13 14
Neural Tube Formation and Patterning 401 Brain Growth 421
Axon Guidance 467 The Epidermis and Its Cutaneous Appendages 498
Origin of the epidermis 498
The Intrinsic Navigational Programming
of Motor Neurons 467 The ectodermal appendages 499
Cell adhesion: A mechanism to grab the road 469 Signaling pathways you can sink your teeth into 501
Ectodermal appendage stem cells 502
25 Index I-1
With biology going into smaller and smaller realms, it is sometimes good to
contemplate the grand scheme of things rather than the details, to “seat thyself
sultanically among the moons of Saturn” (in Herman Melville’s phrase). It is
good, for instance, to get a perspective of developmental biology from outside
the discipline rather than from inside it.
Notice that biophysics was also an early part of the mix of developmental biol-
ogy. This area, too, is having a renaissance. The physical connections between
cells, the strength of their bonding, and the tensile strength of the material sub-
strates of the cells are all seen to be critical for normal development. Physical
forces are necessary for sperm-egg binding, gastrulation, heart development,
gut development, the branching of the kidney and lung epithelia, and even the
development of tumors. Physical forces can direct the development of stem cells
toward particular fates, and they can determine which part of the body is left
and which is right. The patella of our kneecap doesn’t form until we put pres-
sure on it by walking. In many cases, physical forces can direct gene expression.
Lev Beloussov, a pioneer in this area, has called this the “morphomechanics of
development.”
Another area that was prominently represented in the early programs of devel-
opmental biology was plant development. Plant development had much in common
with regeneration, as “adult” plants could redevelop entire parts of their bodies.
Whereas in animal biology the study of development diverged from the study
of physiology, that separation was not evident in plant biology. Moreover, while
many animals quickly set aside a germline that was to become the sperm or eggs,
this was not the case in plants. Such comparisons between plants and animals are
now present throughout this text, and they serve to highlight the fundamental
developmental processes that are present across phyla and even kingdoms of life.
But the genes remain the center of focus in developmental biology. And the
more we learn about them, the more interesting and complex these genes be-
come. New advances in “single cell transcriptomics” have given us an amazing
privilege—the ability to look at the gene expression patterns of individual cells
as they develop. An individual’s cells may all have the same genes, but their dif-
ferent positions in the embryo cause different genes to be active in each cell. It’s a
symphony of relationships, each cell providing the context for another. If develop-
ment is the performance, then the genome is the script or score. As anyone who
has gone to concerts knows, different bands perform the same score differently,
and the same band will play the same song differently on two successive nights.
Environment is also critical—hence, the new interest in plasticity and symbiosis
in development.
Developmental biology has also taken on a new role in science. More than
any other biological science, it demonstrates the critical importance of processes
as opposed to entities. In many organisms, the same process can be done by
different molecules. “It’s the song, not the singer,” say Doolittle and Booth, and
we can be thankful that there are redundant pathways in development—if one
pathway fails, another is often able to take over its function. The entity/process
split in developmental biology mirrors the particle/wave dichotomy in physics.
It is a “both, and” situation, rather than an “either/or” situation. In 1908, the
Scottish physiologist J. S. Haldane said, “That a meeting point between biology
and physical science may at some time be found, there is no doubting. But we
may confidently predict that if that meeting-point is found, and one of the two
sciences is swallowed up, that one will not be biology.” Developmental biology
may well solve the longstanding mysteries of physics.
chapter, we have integrated essential plant biology into the chapters on cell speci-
fication, gene regulation, cell communication, gamete production, fertilization,
axis determination, organ formation, and regeneration.
• Focused and streamlined coverage. Over the years, as new knowledge has
grown, so has our own textbook, which was reaching a size that might
itself trigger student overload and defeat the purposes of engagement
and deep learning. The information bombarding students is not going
away; therefore, they need not only access to the information but also a
clear guide that fosters movement from the essential ideas to the com-
plex mechanisms and finally to inclusive invitations that welcome their
research in this field. We have both reduced and reorganized the content
in each chapter to achieve a clear and supportive lattice so that both the
professor and the student can more easily navigate the increasing vol-
ume and complexity of developmental biology.
• Innovative pedagogy: Empowering students to craft their own learning. The
first material students will encounter in each section of a chapter rep-
resents the most essential content. We have introduced a new element
called “Further Development,” which highlights content we feel repre-
sents some of the more complex ideas in the field. In addition, students
will also come across invitations to view some Further Developments
online. These online topics represent fantastic opportunities for students
to further develop their understanding of developmental biology along
paths of their own interest—paths of investigation that professors can
have confidence match the standards of quality seen throughout the
textbook (unlike some other online sources). The special in-text fea-
tures of previous editions—Dev Tutorials, Developing Questions, Next
Step Investigations, and citations throughout—are still in place to play
xx
Preface
Thanks to this new organization of content, professors and students will now
be in complete control of what level of material may be most appropriate. We are
proud to introduce Developmental Biology 12e, as it still provides direct access to
all levels of the content but without diluting its quality and the overall learning
experience.
Acknowledgments
First, the two authors gratefully acknowledge their mutual respect for one an-
other and for the enjoyment of each other’s work. Michael wants the community
to know that Scott has been most accepting and welcoming to new ideas and
that his enthusiasm for producing the best product has not wavered any day
of any edition. Scott wants the community to know that he is thrilled with the
new ideas that Michael has brought to the book and that Michael’s commitment
to undergraduate education is second to none.
Second, we are thrilled to acknowledge the importance of Mary Stott Tyler to
this book. The winner of the Viktor Hamburger Education Award and the author
of Fly Cycle, Differential Expressions, The Developmental Biology Vade Mecum, and
Inquiry Biology, Mary has been a mixture of author, editor, and curator of contents
for this 12th edition, helping us decide “what to leave in/what to leave out.” As we
added plant studies to the book and had to remove other studies, Mary’s insight
and vision for the finished book was essential.
If science is like a balloon expanding into the unknown—and the larger the
balloon, the more points in contact with the unknown—then developmental
biology has contacted an astounding number of unknowns. The accuracy and
coverage of the 12th edition owes much to the work of the many expert reviewers
who took the time to provide respectful formal and informal feedback throughout
the process (see list). The organization of these reviews was consistently executed
by Lauren Cahillane, Nina Rodriguez-Marty and Katie Tunkavige—thank you
for making this important part possible. This 12th edition is particularly unique
as it marks the new incorporation of plant developmental biology. There were
numerous reviewers who offered their expertise in select chapters, thank you to
all. Special thanks, however, go to Anna Edlund and Marta Laskowski for their
reviews of the plant content. They were very patient with us, and any misunder-
standings are those of the authors.
This edition also marks a dramatic change to the publishing of Developmental
Biology. With the retirement of Andy Sinauer, Sinauer Associates has become an
imprint of Oxford University Press. Our book overlaps these two periods, and has
seen the change of managers, art directors, and our long-time editor. We thank
both Sinauer Associates and Oxford University Press for their great efforts in
sustaining the book during this period of metamorphosis. We wish to especially
thank Dean Scudder for taking on the managerial tasks and allowing us to work
on new models of science education during this transition. Moreover, half-way
through production of this edition, Jason Noe of Oxford became our overseeing
editor. Such a transition and short timeline for production might rattle the best of
editors, but Jason helped to establish the best adaptable plans to keep things on
track. Sincere thanks for your efforts, Jason. Meanwhile, in the house of Sinauer,
production editors Laura Green and Kathaleen Emerson shared their expertise
and their truly collaborative insights, offering us respectful considerations during
key times that we will not forget. Thank you Laura for also sharing with us your
most valuable plant background throughout the editorial process.
Preface xxi
The success of this and each edition equally rests on the quality of the book’s
design and look, for which we sincerely appreciate the wonderful work Sinauer’s
art, media, and overall production team have done. The media team was headed by
Suzanne Carter and supported by the creative drive of Peter Lacey. Sincere thanks
to you both. Further thanks to the entire group at Dragonfly Media, who continue
to do a great job taking care to represent many of Michael’s original drawings
with supreme accuracy. We’d also like to thank Joan Gemme, Beth Roberge, and
Annette Rapier for their excellent design, layout, and production of this edition.
One of the long-loved hallmarks of Developmental Biology has been the incor-
poration of actual data and images that represent the science. Special thanks to
the permissions team, Mark Siddall, Tracy Marton, and Michele Beckta for their
non-stop efforts in securing the rights to these essential pieces of the book. But
of course, a new book can only reach the hands of the students with the help of
a robust and strategic sales team. Many thanks to Susan McGlew and to all the
salespersons at Oxford now helping to support this textbook.
Lastly, it needs to be acknowledged that while Scott is blissfully retired,
Michael is still working his tail off doing teaching, research, committee assign-
ments, and so forth, in addition to his strong family commitments. He would
not be able to provide the time and energy to this textbook if he did not have
the support of his own institution and students. Thank you, Smith College, for
continuing to allow Michael to produce and disseminate his Web Conferences,
Developmental Documentaries, and the Dev Tutorials freely to the community.
Most sincere thanks to Michael’s research students, who had to endure their
principle investigator being too engrossed in all things development all the time!
Know that your patience, support, and insights surely made this book possible.
— M.J.F.B.
—S.F.G.
May 24, 2019
Reviewers of the Twelfth Edition
Looseleaf Textbook
(ISBN 978-1-60535-824-6)
Developmental Biology, Twelfth Edition is also available in
a three-hole punched, looseleaf format. Students can take
just the sections they need to class and can easily integrate
instructor material with the text.
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