Cecílias e Cobras Cegas
Cecílias e Cobras Cegas
Cecílias e Cobras Cegas
Volume 5 of Series:
Reproductive Biology and Phylogeny
Series edited by Barrie G. M. Jamieson
The layout of this reprint is not exactly as published (some lines at the end of some pages appear
at the beginning of the following page in the printed version) but the content is the same.
CHAPTER
2
Caecilian Phylogeny and
Classification
Mark Wilkinson1* and Ronald A. Nussbaum2
2.1 INTRODUCTION
Fifteen years ago, we published a critical review of caecilian phylogeny and
classification (Nussbaum and Wilkinson 1989). We hoped to establish some
stability in caecilian classification in the face of some highly divergent
phylogenetic hypotheses and alternative taxonomic treatments (Wake and
Campbell 1983; Duellman and Trueb 1986; Lescure et al. 1986; Laurent
1986). We concluded that caecilian phylogeny was too poorly known to
provide the basis for a working phylogenetic classification that recognized
only well-founded monophyletic groups. Instead, we provided an interim,
conservative classification in which 154 nominate species were partitioned
into six families with no sub- or suprafamilial ranks other than 34 genera.
Up until 1968, all caecilians were placed into a single family, the Caeciliidae,
and we recognized that the subsequent removal of distinctive subsets of
species in the establishment of additional families had left the Caeciliidae
a most likely paraphyletic assemblage of caecilians that did not fit into one
of the better circumscribed families. This is reflected in the relative numbers
of taxa: well over half of all recognized caecilian species and genera are
caeciliids.
Some important milestones have appeared over the last 15 years in
caecilian phylogenetics. Since our previous review, the first phylogenetic
study of the interrelationships of caecilians based on DNA sequence data
was published. Hedges et al. (1993) analyzed partial 16S and 12S mt rDNA
sequences for 13 caecilian species in 9 genera, including members of four of
the family-level taxa recognized in our 1989 classification. Recently, the
taxonomic coverage for these molecular markers has begun to expand, so
that comparative sequence data are now available for 23 species, 16 genera
1
Department of Zoology, The Natural History Museum, London SW7 5BD, United Kingdom
2
Division of Amphibians and Reptiles, Museum of Zoology, The University of Michigan, Ann
Arbor, Michigan, 48109-1079, USA
*
This work is dedicated to the memories of John Eric Wilkinson and Annie Wilkinson.
40 Reproductive Biology and Phylogeny of Gymnophiona
and for representatives of all six families (Wilkinson et al. 2002; 2003b).
Gower et al. (2002), in a study focusing on ichthyophiid caecilians,
demonstrated the potential for sequence data from ribosomal and protein
coding (cytochrome B) mt DNA to help resolve low level taxonomic
problems when the taxonomic sampling is sufficiently dense, and Gower et
al. (2005) tentatively identified an undescribed cryptic species of Sri Lankan
Ichthyophis using molecular data. Recently, San Mauro et al. (2004)
addressed relationships among single representatives of each of the six
families with a combination of complete mitochondrial genomes and RAG-
1 nuclear gene sequences.
Morphological data sets have also been expanded in terms of taxa and
through the discovery of additional characters, and previously assembled
data have been critically reviewed and revised to reduce errors (Naylor and
Nussbaum 1980; Nussbaum and Naylor 1982; Scheltinga et al. 2003, see also
Chapter 7 of this volume; Wilkinson and Nussbaum 1996; Wilkinson 1996,
1997). There have also been a few phylogenetic studies of monophyletic
subgroups at the genus- or species-level using morphological data
(Nussbaum and Hinkel 1994; Wilkinson and Nussbaum 1999; Wilkinson et
al. 2004).
In our 1989 classification, we provided diagnoses of caeciliid genera
based on a core set of characters. Although each genus was understood to
have a unique combination of characters, uniquely derived characters
supporting the monophyly of most caeciliid genera were simply unknown,
and knowledge of the diversity within the more speciose nominate genera
was limited to one or a few species. Since 1989, a single genus and 16
species (one of which we consider invalid) have been newly described, and
5 species have been removed from synonymy. In the same period, two
genera and 5 species have been lost to synonymy (in addition to those we
excluded from our treatment and subsequently synonymized). Little else
has changed, and the limited low-level taxonomic activity belies the fact
that taxonomy at the species- and genus-level remains in need of careful
study and stabilisation. The new genus, Atretochoana was established to
receive a single species of typhlonectid caecilian with a radically divergent
morphology discovered in the course of routine taxonomic work
(Nussbaum and Wilkinson 1995). Atretochoana is the largest lungless
tetrapod and the only known lungless caecilian, and it possesses many
unique features associated with a novel cranial architecture (Wilkinson and
Nussbaum 1997). Its discovery represents a substantial increase in the
perceived diversity of caecilians, and of tetrapods (Donoghue and Alverson
2000), and it serves to emphasise the limited knowledge of caecilian
biodiversity.
Overall, taxonomic coverage has remained patchy in both
morphological and molecular phylogenetic studies. Consequently, even
where inferred relationships for the subset of sampled taxa are well-
supported, they are not readily translated into a phylogenetic classification
of the entire Order. This is exacerbated by the low-level taxonomic
Caecilian Phylogeny and Classification 41
Fig. 2.1. Uniquely derived, dual jaw-closing mechanism, which is diagnostic of caecilians (Nussbaum
1977). The two parts consist of the ancestral jaw-closing mechanism, common to all vertebrates, and
a novel component. In the ancestral mechanism, the m. adductor mandibulae (mam) pulls up on the
lower jaw (d, dentary) in front of the articulation of the lower jaw with the skull. In the novel component,
the m. interhyoideus posterior (mip) pulls down on a process of the dentary (pret, or processus
retroarticularis) that projects posteriorly from the jaw articulation, causing the lower jaw to swing up.
The mip, normally a throat constrictor, takes on a new function of jaw-closing in caecilians. The m.
depressor mandibulae (mdm) serves to open the jaws in all caecilians by pulling up on the pret.
Rhinatrematids have the presumed ancestral condition in which the ancestral jaw-closing mechanism
dominates. Ichthyophiids, caeciliids, and scolecomorphids demonstrate progressively increased
dominance of the novel component. The lower jaw becomes progressively shorter and the pret
progressively longer and more curved dorsally in the same evolutionary sequence. The horizontal bar
= 1 mm. Adapted from Nussbaum, R. A. 1983. Journal of Zoology, London 199: 545-554, Fig. 2.
Caecilian Phylogeny and Classification 43
2.2.1 Rhinatrematidae
Nussbaum (1977) listed six uniquely derived features that support the
monophyly of the Rhinatrematidae, a small Neotropical family including
the two genera Rhinatrema and Epicrionops and nine recognised species.
Most distinctive of the supporting conditions is the presence of a posterior
notch in the squamosal that accommodates a distinct process of the os
basale. Apart from the lack of a distinct basipterygoid process, Nussbaum’s
(1977) other derived features of rhinatrematids, the reduction or absence of
ceratobranchials 2 and 3; the larynx posterior to the glossal skeleton; and
the absence of the musculus subarcualis rectus II and III, all relate to the
reduction of the posterior hyobranchial apparatus and are unlikely to be
completely independent. A musculus subarcualis rectus II is now known to be
absent in typhlonectids also, although in typhlonectids its absence is
associated with the elaboration, rather than reduction, of the
buccopharyngeal pump (Wilkinson and Nussbaum 1997), and is surely
convergent with the condition in rhinatrematids. Wilkinson (1996)
identified two derived cardiovascular features that also support
rhinatrematid monophyly, namely the partial division of the normally
undivided sinuatrial aperture and the left pulmonary artery supplying the
oesophagus rather than the left lung.
None of these features has been documented in all the currently
recognised rhinatrematid species, most of which remain unstudied in any
detail, but most have been documented for the monotypic Rhinatrema and
for one or more species of Epicrionops. Based on the general similarity of all
known rhinatrematids, we do not expect these morphological features to
vary much within the family. Rhinatrematid sampling in Wilkinson’s (1997)
morphological phylogenetic analysis and in the molecular study of Gower
et al. (2002) was limited to only two species of Epicrionops in the former and
one Epicrionops and the monotypic Rhinatrema in the latter. In both analyses,
the results were consistent with rhinatrematid monophyly, and the
44 Reproductive Biology and Phylogeny of Gymnophiona
caecilians with jaw-closing muscles that do not extend onto the top of the
skull from the adductor chamber.
2.2.3 Ichthyophiidae
The Ichthyophiidae comprises some 39 species in the two genera
Caudacaecilia and Ichthyophis. Caudacaecilia is restricted to South East Asia
whereas Ichthyophis also has representatives in South Asia. In Nussbaum’s
(1979) analyses, Caudacaecilia and Ichthyophiidae were closely related, but
lacked any uniquely derived features that supported their monophyly. In
fact, despite the external similarity of all ichthyophiids, and practical
difficulty of distinguishing ichthyophiid species (Nussbaum and Gans
1980), only a single feature that supports ichthyophiid monophyly has been
reported previously, the presence of angulate annuli on the anteroventral
surface (Nussbaum 1977; Wilkinson and Nussbaum 1996). An additional
supporting derived feature, a short parasphenoid that does not extend as
far anteriorly as the posterior margin of the choanae, is characteristic of all
ichthyophiid skulls and of no non-ichthyophiid skulls that we have
examined.
Wilkinson (1997) and Wilkinson et al. (2002) both recovered the very
few ichthyophiids included in their morphological and molecular
phylogenetic analyses (three and two species of Ichthyophis respectively) as
a reasonably well-supported monophyletic group. In contrast, the
molecular study of Gower et al. (2002) included a broader range of
Ichthyophis species and yielded optimal trees in which the Ichthyophiidae is
paraphyletic with respect to the Uraeotyphlidae. Although this result was
not significantly better supported than alternative trees in which the
Ichthyophiidae is monophyletic, and thus does not justify any taxonomic
changes at this time, it raises the possibility of ichthyophiid paraphyly and
indicates the need for further phylogenetic study and additional character
data. Phylogenetic relationships among ichthyophiids are poorly
understood, but Gower et al. (2002) suggested that the Ichthyophis of Sri
Lanka, and those of South East Asia comprise distinct monophyletic groups
(see also Bossuyt et al. 2004; Gower et al. 2005). All recent work supports the
idea that the ichthyophiids were present on the Indian plate prior to its
collision with Laurasia, and that South East Asian ichthyophiids result from
one or more dispersals out of India (Gower et al. 2002; Wilkinson et al. 2002).
Caudacaecilia and Ichthyophis are differentiated by the absence or
presence of splenial teeth in adults respectively. Absence of splenial teeth is
considered derived within caecilians (Nussbaum 1979) but appears to be
quite homoplastic (Nussbaum and Wilkinson 1989). Thus there is only very
weak evidence known to support the monophyly of Caudacaecilia, no
known derived features supporting the monophyly of Ichthyophis, and a
strong possibility that Ichthyophis is paraphyletic with respect to
Caudacaecilia. No Caudacaecilia have been included in any numerical
phylogenetic analysis since Nussbaum (1979).
46 Reproductive Biology and Phylogeny of Gymnophiona
2.2.4 Uraeotyphlidae
The genus Uraeotyphlus comprises five nominate species from southern
peninsular India. The genus was included in the Caeciliidae by Taylor
(1968, 1969) but transferred to its own subfamily within the Ichthyophiidae
by Nussbaum (1979). Duellman and Trueb (1986) elevated Nussbaum’s
Uraeotyphlinae to family level because their phylogenetic analyses
suggested that inclusion of the Uraeotyphlinae within Ichthyophiidae
rendered the latter paraphyletic. Uraeotyphlids share a combination of
ancestral and derived features, but there are no known uniquely derived
features that support the monophyly of the genus and family, a
consequence of extensive convergence between uraeotyphlids and various
caeciliids. Gower et al. (2002) included three uraeotyphlid species in their
molecular phylogenetic analysis and obtained strong support for
monophyly of the group as a whole as well as for relationships among the
species. The anterior tentacles, dorsal nares, and recessed subterminal
mouths, though not unique, are probably derived within the
Ichthyophiidae plus Uraeotyphlidae, providing qualified support for the
monophyly of Uraeotyphlus (Wilkinson and Nussbaum 1996).
2.2.7 Scolecomorphidae
The Scolecomorphidae was established by Taylor (1969) for a few
distinctive African caecilians. It currently comprises the West African
Crotaphatrema and East African Scolecomorphus, each with three nominate
species. These genera share many distinctive, derived morphological
features that provide strong support for scolecomorphid monophyly. These
include the absence of stapes and foramina ovales, absence of internal
processes on lower jaws, a transverse bar extending between the
posteromedial edges of the posteriormost ceratobranchial elements of the
glossal skeleton (Nussbaum 1977), and a mobile eye attached to the base of
the tentacle (Taylor 1968; Nussbaum 1981, 1985; O’Reilly et al. 1996). No
Crotaphatrema have been included in any numerical phylogenetic analyses,
but Wilkinson (1997) included all three Scolecomorphus species in his
morphological phylogenetic analysis, and two species were included in the
Wilkinson et al. (2003b) molecular phylogenetic study. In both cases there
was strong support for the monophyly of Scolecomorphus, which is
supported by the presence of a uniquely large diastema between the
vomerine and palatine dental series. Monophyly of Crotaphatrema is
supported by the particular form of stegokrotaphy in which the upper
temporal fossa is obliterated by an outgrowth of the parietal (Nussbaum
1985). Wake (1998) suggested a close relationship between S. kirkii and S.
vittatus on the basis of similar phallus morphology.
2.2.8 Typhlonectidae
The Typhlonectidae was established by Taylor (1968) for a group of
Neotropical caecilians that he believed were aquatic and which are now
considered to be either aquatic or semi-aquatic (Nussbaum and Wilkinson
48 Reproductive Biology and Phylogeny of Gymnophiona
1987; 1989). As currently conceived, the family includes five genera, three
of which are monotypic. A highly distinctive derived feature that supports
typhlonectid monophyly is the fused, sac-like form of the foetal gills
(Wilkinson 1989; Wilkinson and Nussbaum 1999). This feature is known in
all typhlonectids for which fetuses have been examined but remains
unknown in Potomotyphlus and Atretochoana. Wilkinson and Nussbaum
(1999) identified six additional features that appeared to be unique and
derived in typhlonectids. These are: small tentacular apertures and (non-
protrusible) tentacles, relatively dorsally oriented occipital condyles, a
ventral process of the squamosal bracing against the maxillopalatine, M-
shaped ceratohyals, a sliding articulation between the third and fourth
ceratobranchials, and the musculus subvertebralis pars ventralis with a
scalloped origin.
Wilkinson’s (1997) morphological phylogenetic analysis found strong
support for the pairing of the only two typhlonectids, Chthonerpeton
indistinctum and Typhlonectes natans, that it included, and is the only study
to have provided a numerical phylogenetic test of typhlonectid monophyly
(which has never been seriously questioned). Well-supported relationships
within the Typhlonectidae have been inferred on the basis of extensive
morphological data (Wilkinson and Nussbaum 1999; see Fig. 2.2). Although
monophyly of Chthonerpeton has not been established, the generotype, C.
indistinctum, lies outside a group including all other typhlonectid genera.
Nectocaecilia, which is believed to be semi-aquatic, is the sister group of a
clade of fully aquatic, finned caecilians that comprises Atretochoana,
Potomotyphlus, and Typhlonectes. Potomotyphlus appears to be the sister
genus of the lungless Atretochoana on the basis of a number of features
associated with a reduction in pulmonary respiration.
2.2.9 Caeciliidae
As currently conceived, the Caeciliidae appears to be a relatively
heterogeneous and paraphyletic assemblage comprising all those caecilians
that have never been removed to another family. Molecular data strongly
support the paraphyly of the Caeciliidae with respect to the
Typhlonectidae, recovering Caecilia as more closely related to Typhlonectes
than to a broad range of other caeciliids (Hedges et al. 1993; Wilkinson et al.
2002, 2003b). Hedges et al. (1993) proposed removing caeciliid paraphyly by
recognising the typhlonectids at the sub-familial rather than familial level,
but in the absence of a better understanding of the relationships among
higher caecilians this action would only shift the problem of paraphyly to
a different taxonomic level. Paraphyly of the Caeciliidae with respect to the
Scolecomorphidae is also suggested by the most recent molecular
phylogenetic study (Wilkinson et al. 2003b). Phylogenetic analyses based on
morphology are less clear cut, with caeciliid monophyly or paraphyly with
respect to both the Typhlonectidae and Scolecomorphidae achieved under
alternative weighting schemes (Wilkinson 1997) and thus not well-
supported. A single derived feature, an elongate musculus interhyoideus
Caecilian Phylogeny and Classification 49
2.2.10 Prospects
The relatively small number of species of Gymnophiona means that a fairly
comprehensive phylogeny for the major lineages of caecilians is a realistic
Fig. 2.2. Summary (consensus) phylogeny of caecilian constructed manually and based on the results
of previous numerical phylogenetic analyses and inferences from taxonomy as described in the text.
The dashed line indicates particularly uncertain monophyly highlighting the potential for the branches
from the main polytomy, including many unstudied taxa, to perhaps lie within this group. Note that
monophyly of many genera is at best uncertain and that there is a need for much more detailed, low-
level, taxonomic work. Original.
Caecilian Phylogeny and Classification 51
short-term goal that we believe is within reach, and will be reached in the
near future. At lower taxonomic levels the systematic foundations are not
so good. Until about 1972, caecilian taxonomy was dominated by E. H.
Taylor who described many species that have not withstood subsequent
scrutiny and have been lost to synonymy. The reduction in numbers of
recognised species has more or less balanced the description of new species
since Taylor’s time, and the work of checking and testing Taylor’s species-
level taxonomic work remains largely incomplete. Most caecilian species
are poorly known and poorly circumscribed, impinging on all aspects of
their biology (e.g., Gower and Wilkinson, 2005), and taxonomic uncertainty
and instability can be expected to continue for some time. However,
molecular phylogenetic studies at low taxonomic levels are proving useful
in helping to delimit and distinguish morphologically similar species in
genera such as Ichthyophis, where identification to species is notoriously
difficult and the existing taxonomy exceedingly problematic. Molecular
studies should facilitate taxonomic work while providing the low-level
phylogenies needed to study caecilian evolution in detail. Ultimately any
understanding of caecilian species, be it derived from molecules or
morphology or (preferably) both, will depend on collecting sufficient (i.e.,
much more) new material across many taxa. Traditionally, caecilians have
been poorly sampled in the field, but this is improving. We think it likely
that many new caecilian species will be discovered, both in research
collections and through additional collecting. It is noteworthy that the
majority of new species described in the 15 years since our last review have
been described in the last five years, perhaps indicating a rise in interest
and the beginnings of a new era of taxonomic discovery (e.g., Gower et al.,
2004). As caecilian taxonomy stabilises, and the rate of losses to synonymy
decreases, we expect the overall number of recognised caecilian species to
increase, and we suspect that the number of currently recognised species is
a considerable underestimate of their actual diversity.
2.3 CLASSIFICATION
The classification presented here includes no major changes from our
previous summary (Nussbaum and Wilkinson 1989), because we think
none is warranted by the current state of knowledge. We draw attention to
three important studies of the taxonomy of regional caecilian faunas by
Pillai and Ravichandran (1999), Savage and Wake (2001) and Lynch (1999)
that provide recent keys. We prefer to accept the paraphyly of the
Caeciliidae for the time being, in the belief that the best way of removing
it will only become apparent with a more comprehensive understanding of
the relationships of caeciliid genera, particularly those that remain
unstudied phylogenetically. Formal taxonomic revision aimed at removing
the paraphyly now, although well-intended, would be incomplete and
unlikely to promote stability in the meanings of names. Thus we use the
same six-family system and same format as in 1989, but with updated
52 Reproductive Biology and Phylogeny of Gymnophiona
to make generalisations about the living caecilians. The latter name is also
problematic because zoological classification is festooned with other uses of
it, most importantly the homonymy with Apoda Haworth 1809, a genus of
moth. We believe clarity would be best served if the use of Apoda in
caecilian classification were completely abandoned. We see no good reason
to rediagnose Gymnophiona in order to accommodate relatively poorly
known fossil taxa that, while possibly closely related to caecilians, are not
caecilians in the sense in which the term is generally used. A. Family
Rhinatrematidae Nussbaum 1977 (Fig. 2.3 A, B)
Diagnosis. Gymnophiona with true tails consisting of a postcloacal
segment with vertebrae, myomeres, and complete skin annuli; primary
annuli divided by secondary and tertiary grooves; all annular grooves
orthoplicate; numerous scales in all annular grooves and in some of the
dorsal grooves of the collars; strongly zygokrotaphic skulls with the musculi
adductores mandibulae externi passing through the temporal fossae to meet at
the midline of the skull along the interparietal suture; maxillopalatine in
contact with the quadrate; squamosal widely separated from the frontal,
notched posteriorly, the notch opposing a dorsolateral process of the os
basale; premaxillae and nasals present as separate bones; mouth terminal;
retroarticular process of lower jaw short and not curved dorsally; musculus
interhyoideus posterior short; stapes pierced by stapedial artery; tentacle
immediately anterior to or on the anterior edge of eye; eyes visible
externally, in a socket in the maxillopalatine; hyobranchium of adults with
only three ceratobranchial elements decreasing in size posteriorly, with the
larynx situated posterior to the hyobranchium (not enclosed between the
two arms of the posteriormost ceratobranchials); hyobranchial elements of
larvae mineralized, hyobranchium of metamorphosed individuals
cartilaginous; truncus arteriosus short; atrium undivided externally.
Content. 2 genera, 9 species.
Distribution. Northern South America.
Remarks. There has been no change in the taxonomy of the
Rhinatrematidae since our review of 1989, and no species description or
other taxonomic actions since Taylor (1968).
1. Epicrionops Boulenger 1883
Type species: Epicrionops bicolor by original monotypy.
Diagnosis. Rhinatrematids with three ceratobranchial arches in adults; a
longitudinal cloacal opening; relatively long tail consisting of more than 11
postcloacal annuli; more than one row of scales per annular groove.
Content. 8 species: bicolor, columbianus, lativittatus, marmoratus, niger, parkeri,
peruvianus, petersi.
Distribution. Colombia, Ecuador, Peru, and Venezuela.
2. Rhinatrema Duméril & Bibron,1841
Type species: Caecilia bivittata Guérin-Méneville 1829, by monotypy.
54 Reproductive Biology and Phylogeny of Gymnophiona
Colour
Figure
concluded that there was some doubt about the collection data. Recent
caecilian surveys in Sri Lanka have not revealed additional specimens
attributable to this genus.
2. Ichthyophis Fitzinger 1826
Type species. Caecilia glutinosa Linnaeus 1758, by original monotypy.
Diagnosis. Ichthyophiids with splenial teeth.
Content. 34 species: acuminatus, atricollaris, bannanicus, beddomei,
bernisi, biangularis, billitonensis, bombayensis, dulitensis, elongatus,
garoensis, glandulosus, glutinosus, humphreyi, husaini, hypocyaneus,
javanicus, kohtaoensis, laosensis, longicephalus, malabaricus,
mindanaoensis, monochrous, orthoplicatus, paucisulcus, peninsularis,
pseudangularis, sikkimensis, singaporensis, subterrestris, sumatranus,
supachaii, tricolor, youngorum.
Distribution. South East Asia, India, Sri Lanka, southern Philippines,
western Indo-Australian Archipelago.
Remarks. Two new species of Ichthyophis (husaini and garoensis) were
described by Pillai and Ravichandran (1999), and Gower et al. (2005)
suggested the presence of an undescribed cryptic species in Sri Lanka.
Kupfer and Müller (2004) provided a rediagnosis of I. supachii. I.
longicephalus (Pillai 1986) was overlooked and not included in our previous
treatment (Nussbaum and Wilkinson 1989).
C. Family Uraeotyphlidae Nussbaum 1979 (Fig. 2.4 A, B)
Diagnosis. Gymnophiona with true tails; weakly stegokrotaphic skulls; m.
adductor mandibulae externi confined beneath the skull roof but may be
visible through a small opening between the squamosal and parietal;
number and arrangement of skull and lower jaw bones and configuration
of the hyobranchium as in the Ichthyophiidae; Stapes imperforate; m.
interhyoideus posterior short; mouth recessed or subterminal; tentacular
opening far forward, below nostril; external nares relatively dorsal, most
primary annuli divided by secondary grooves, a few anterior primary
annuli may not be subdivided, or primary and higher-order annuli
indistinguishable externally; annular grooves do not completely encircle the
body; scales present; aortic arches proximal to the heart fused into an
elongate truncus arteriosus; atrium partially divided externally.
Content. l genus, 5 species.
Distribution. Southern peninsular India.
Remarks. The diagnosis (of Nussbaum and Wilkinson 1989) has been
modified to account for new information on the diversity of uraeotyphlid
annulation patterns (Gower and Wilkinson in prep.; Nussbaum, pers. obs.).
1. Uraeotyphlus Peters 1879
Type species. Coecilia oxyura Duméril and Bibron 1841, by subsequent
designation of Noble (1924).
Diagnosis. As for the family.
Caecilian Phylogeny and Classification 57
Colour
Figure
M-shaped ceratohyal arch; larynx between distal ends of fused third and
fourth ceratobranchials; no tail; some, none, or all primary annuli
subdivided by secondary grooves; no tertiary grooves; scales present or
absent; external gills of embryos in three rami (one ramus may be reduced
or vestigial), not fused and sac-like; aortic arches proximal to the heart
fused into an elongate truncus arteriosus; atrium undivided externally.
Content. 21 genera, 98 species.
Distribution. Tropical Central and South America, equatorial East and West
Africa, islands of the Gulf of Guinea, Seychelles Archipelago, and India.
Remarks. During the late 1980’s and early 1990’s, the name “Caeciliaidae”
was used for this family in an attempt to remove the homonymy of
Caeciliidae Rafinesque, 1814 (Amphibia) with Caeciliidae Kolbe, 1880
(Insecta). The problem is outlined in Moore et al. (1984). In 1996, the
Commission on Zoological Nomenclature, under its plenary powers, ruled
(Opinion 1830, BZN 53(1):68-69) that Caeciliidae Rafinesque, 1814 is the
valid amphibian name, and the insect name was changed to Caeciliusidae
Kolbe, 1880.
1. Boulengerula Tornier 1897
Type species. Boulengerula boulengeri Tornier 1897, by monotypy.
Diagnosis. Caeciliids with eye (if present) under bone; no temporal fossae;
mesethmoid exposed between frontals or not; inner mandibular teeth
present or not; no secondary grooves; no scales; tentacular opening nearer
to eye than to external naris; an unsegmented terminal shield; no narial
plugs; a strong diastema between the vomerine and palatine teeth present
or not; a vertical keel on the end of the terminal shield.
Content. 6 species: boulengeri, changamwensis, denhardti, fischeri, taitana,
uluguruensis.
Distribution. Kenya, Malawi, Tanzania and Rwanda.
Remarks. Nussbaum and Hinkel (1994) placed Afrocaecilia in the synonymy
of Boulengerula and described B. fischeri. Wilkinson et al. (2004) removed B.
denhardti from the synonymy of Schistometopum gregorii. Their phylogenetic
analyses using Nussbaum and Hinkel’s morphological data were unable to
resolve well-supported relationships within the genus. Monophyly of the
genus is not seriously in question. Many of the diagnostic features are
derived within the Neocaecilia although none of them uniquely so, and in
molecular analyses, grouping of the two species of Boulengerula included
thus far is well supported (Wilkinson et al. 2003b).
Fig. 2.4 contd
Fig. 2.4 A-B. Adult or subadult Uraeotyphlus sp. (Uraeotyphlidae) from the Western Ghats, peninsular
India; note the dorsal orientation of the eyes and external nares, and the undivided primary annuli on
the anterior portion of the body; photo by John Measey. C-D. Adult Caecilia cf. tentaculata (Caeciliidae)
from South America; note the lack of undivided primary annuli over most of the body, but with some
subdivided primaries posteriorly; the tentacle cannot be seen, because it is directed ventrally from the
“shelf” below the external naris; photo by Peter Stafford.
60 Reproductive Biology and Phylogeny of Gymnophiona
Colour
Figure
Colour
Figure
Remarks. Caecilia is the largest genus of caecilians in the New World and
has a broad distribution. Over half the species were described by E. H.
Taylor, and most are poorly characterised and delimited. Surprisingly, there
have been no new species described and little taxonomic work on the group
since 1989 despite the clear need for the latter. A helpful treatment of the
Caecilia of Colombia is given by Lynch (1999). Summers and Wake (2001)
redescribed the holotype of C. volcani. C. isthmica was accidentally omitted
from our previous treatment (although counted in the total number of
species).
4. Dermophis Peters 1879
Type species. Siphonops mexicanus Duméril & Bibron 1841, by subsequent
designation of Noble (1924).
Diagnosis. Caeciliids with eye not covered with bone; no temporal fossae;
mesethmoid covered or exposed; no splenial teeth; secondary grooves
present; scales present; tentacular opening closer to eye than to external
naris; no unsegmented terminal shield; no narial plugs; no diastema
between vomerine and palatine teeth; no terminal keel.
Content. 7 species: costaricensis, glandulosus, gracilior, mexicanus, oaxacae,
occidentalis, parviceps.
Distribution. Southern Mexico south to northwestern Colombia.
Remarks. Following our 1989 comment that some of the species of
Dermophis considered invalid by Savage and Wake (1972) were valid,
Savage and Wake (2001) resurrected four species from the synonymies they
had previously proposed.
5. Gegeneophis Peters 1879
Type species: Epicrium carnosum Beddome 1870, by original monotypy.
Diagnosis. Caeciliids with eye under bone; no temporal fossae;
mesethmoid not exposed dorsally; splenial teeth present; secondary
grooves present; scales present; tentacular opening midway between eye
and external naris; no unsegmented terminal shield; narial plugs on tongue;
no diastema between vomerine and palatine teeth; terminal keel present or
absent.
Content. 8 species: carnosus, danieli, fulleri, krishni, madhavai, nadkarnii,
ramaswamii, seshachari.
Fig. 2.6 A. Adult female Ichthyophis kohtaoensis (Ichthyophiidae) from Thailand guarding her clutch of
early-stage embryos; the species is oviparous with indirect development; the nest is terrestrial; the
hatchling larvae make their way to nearby streams where they grow and eventually metamorphose into
terrestrial subadults; photo by Alex Kupfer. B. Adult female Boulengerula boulengeri (Caeciliidae) from
Tanzania guarding her early-stage embryos in a terrestrial nest; the species is oviparous with direct
development (no larval stage); photo by Alex Kupfer. C. Adult Boulengerula taitanus (Caeciliidae) from
the Taita Hills, Kenya, guarding her early-stage embryos in a terrestrial nest; the species is oviparous
with direct development; photo by Alex Kupfer.
64 Reproductive Biology and Phylogeny of Gymnophiona
Distribution. India.
Remarks. Five new species of Gegeneophis have recently been described
from Maharashtra (Ravichandran et al. 2003; Giri et al. 2003) Karnataka
(Pillai and Ravichandran 1999; Bhatta and Srinivasa 2004) and Goa (Bhatta
and Prasanth 2004). Giri et al. (2003) also revised the generic diagnosis. No
uniquely derived traits are known for this genus.
6. Geotrypetes Peters 1880
Type species. Caecilia seraphini Duméril 1859, by original monotypy.
Diagnosis. Caeciliids with eye not covered with bone; temporal fossae
present; mesethmoid exposed dorsally; splenial teeth present; secondary
grooves present; scales present; tentacular opening closer to external naris
than to eye; no unsegmented terminal shield; narial plugs present on
tongue; no diastema between vomerine and palatine teeth; no terminal keel.
Content. 3 species: angeli, pseudoangeli, seraphini.
Distribution. Equatorial West Africa and Bioko Island.
Remarks. Nussbaum and Pfrender (1998) noted that Schistometopum
garzonheydti from Bioko is a junior synonym of Geotrypetes seraphini.
Geotrypetes seraphini have a distinctively shaped os basale (pers. obs.) and
unique arrangements of cranial muscles and anterior trunk muscles (Sheps
et al. 1997; Wilkinson, unpublished) which, if present in the other species,
would provide strong support for the monophyly of the genus.
7. Grandisonia Taylor 1968
Type species: Hypogeophis alternans Stejneger 1893, by original designation.
Diagnosis. Caeciliids with eye not covered with bone; no temporal fossae;
mesethmoid not exposed dorsally; splenial teeth present; secondary
grooves present on more than half of the primary annuli, may be missing
on some anterior primaries; scales present; tentacular opening variable in
position, may be closer to external naris than to eye, nearly midway
between eye and external naris, or slightly closer to eye; no unsegmented
terminal shield; narial plugs present on tongue; no diastema between
vomerine and palatine teeth; no terminal keel.
Content. 4 species: alternans, brevis, larvata, sechellensis.
Distribution. Seychelles Archipelago.
Remarks. Grandisonia diminutiva is based on juvenile specimens of G.
sechellensis (Nussbaum, unpublished). The small “tail” that Taylor (1968)
considered to be diagnostic of G. diminutiva does not exist, and the rest of
the characteristics of the type series fall well within the range of G.
sechellensis.
8. Gymnopis Peters 1874
Type species: Gymnopis multiplicata Peters 1874, by original monotypy.
Diagnosis. Caeciliids with eye covered by bone; no temporal fossae;
mesethmoid not exposed dorsally; splenial teeth present; secondary
grooves present; scales present; tentacular opening closer to eye than to
Caecilian Phylogeny and Classification 65
2.4 ACKNOWLEDGEMENTS
We cannot individually acknowledge all of our many colleagues: field
workers, bench workers, researchers, curators, students and technicians
who have facilitated our work in one way or another, but we wish to
72 Reproductive Biology and Phylogeny of Gymnophiona
express our sincere thanks for these contributions without which most our
work would not be possible. We thank David Gower, Hendrik Müller and
Samantha Mohun for reviewing the manuscript and Alex Kupfer, Daniel
Boone, Peter Stafford, and John Measey for providing photographs. MW
gratefully acknowledges funding from University of Glasgow New
Initiatives Fund, the Museum and Zoology Research Funds of the Natural
History Museum, London, the Percy Sladen Memorial Trust and the NERC
(GST/02/832 and GR9/02881). RAN received grants from the National
Geographic Society and the U.S. National Science Foundation in support of
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