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GEO accession:
Series GSE181244
Query DataSets for GSE181244
Status
Public on Aug 23, 2021
Title
PRC2 shields naive pluripotent cells from trophectoderm and mesoderm differentiation.
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://doi.org/10.1038/s41556-022-00916-w
Citation(s)
35637409
Submission date
Jul 30, 2021
Last update date
Jun 13, 2022
Contact name
Simon J Elsässer
Organization name
Karolinska Institutet
Department
Medical Biochemistry and Biophysics
Lab
Elsässer
Street address
Tomtebodavägen 23A
City
Solna
ZIP/Postal code
17165
Country
Sweden
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL28038
DNBSEQ-G400 (Homo sapiens)
Samples (66)
Less...
More...
GSM5493440
H2Aub-ChIP H9 (naïve) rep1
GSM5493441
H2Aub-ChIP H9 (naïve) rep2
GSM5493442
H2Aub-ChIP H9 (naïve) rep3
GSM5493443
H2Aub-ChIP H9 (naïve) 7d+EZH2i rep1
GSM5493444
H2Aub-ChIP H9 (naïve) 7d+EZH2i rep2
GSM5493445
H2Aub-ChIP H9 (naïve) 7d+EZH2i rep3
GSM5493446
H2Aub-ChIP H9 (primed) rep1
GSM5493447
H2Aub-ChIP H9 (primed) rep2
GSM5493448
H2Aub-ChIP H9 (primed) rep3
GSM5493449
H2Aub-ChIP H9 (primed) 7d+EZH2i rep1
GSM5493450
H2Aub-ChIP H9 (primed) 7d+EZH2i rep2
GSM5493451
H2Aub-ChIP H9 (primed) 7d+EZH2i rep3
GSM5493452
H3K27m3-ChIP H9 (naïve) rep1
GSM5493453
H3K27m3-ChIP H9 (naïve) rep2
GSM5493454
H3K27m3-ChIP H9 (naïve) rep3
GSM5493455
H3K27m3-ChIP H9 (naïve) 7d+EZH2i rep1
GSM5493456
H3K27m3-ChIP H9 (naïve) 7d+EZH2i rep2
GSM5493457
H3K27m3-ChIP H9 (naïve) 7d+EZH2i rep3
GSM5493458
H3K27m3-ChIP H9 (primed) rep1
GSM5493459
H3K27m3-ChIP H9 (primed) rep2
GSM5493460
H3K27m3-ChIP H9 (primed) rep3
GSM5493461
H3K27m3-ChIP H9 (primed) 7d+EZH2i rep1
GSM5493462
H3K27m3-ChIP H9 (primed) 7d+EZH2i rep2
GSM5493463
H3K27m3-ChIP H9 (primed) 7d+EZH2i rep3
GSM5493464
H3K4m3-ChIP H9 (naïve) rep1
GSM5493465
H3K4m3-ChIP H9 (naïve) rep2
GSM5493466
H3K4m3-ChIP H9 (naïve) rep3
GSM5493467
H3K4m3-ChIP H9 (naïve) 7d+EZH2i rep1
GSM5493468
H3K4m3-ChIP H9 (naïve) 7d+EZH2i rep2
GSM5493469
H3K4m3-ChIP H9 (naïve) 7d+EZH2i rep3
GSM5493470
H3K4m3-ChIP H9 (primed) rep1
GSM5493471
H3K4m3-ChIP H9 (primed) rep2
GSM5493472
H3K4m3-ChIP H9 (primed) rep3
GSM5493473
H3K4m3-ChIP H9 (primed) 7d+EZH2i rep1
GSM5493474
H3K4m3-ChIP H9 (primed) 7d+EZH2i rep2
GSM5493475
H3K4m3-ChIP H9 (primed) 7d+EZH2i rep3
GSM5823907
Input H9 (naïve) rep1
GSM5823908
Input H9 (naïve) rep2
GSM5823909
Input H9 (naïve) rep3
GSM5823910
Input H9 (naïve) 7d+EZH2i rep1
GSM5823911
Input H9 (naïve) 7d+EZH2i rep2
GSM5823912
Input H9 (naïve) 7d+EZH2i rep3
GSM5823913
Input H9 (primed) rep1
GSM5823914
Input H9 (primed) rep2
GSM5823915
Input H9 (primed) rep3
GSM5823916
Input H9 (primed) 7d+EZH2i rep1
GSM5823917
Input H9 (primed) 7d+EZH2i rep2
GSM5823918
Input H9 (primed) 7d+EZH2i rep3
GSM5823919
RNA-Seq H9 (naïve) rep1
GSM5823920
RNA-Seq H9 (naïve) rep2
GSM5823921
RNA-Seq H9 (naïve) rep3
GSM5823922
RNA-Seq H9 (naïve) 7d+EZH2i rep1
GSM5823923
RNA-Seq H9 (naïve) 7d+EZH2i rep2
GSM5823924
RNA-Seq H9 (naïve) 7d+EZH2i rep3
GSM5823925
RNA-Seq H9 (primed) rep1
GSM5823926
RNA-Seq H9 (primed) rep2
GSM5823927
RNA-Seq H9 (primed) rep3
GSM5823928
RNA-Seq H9 (primed) 7d+EZH2i rep1
GSM5823929
RNA-Seq H9 (primed) 7d+EZH2i rep2
GSM5823930
RNA-Seq H9 (primed) 7d+EZH2i rep3
GSM5866861
H9 naïve untreated
GSM5866862
H9 naïve 2d EZH2i
GSM5866863
H9 naïve 4d EZH2i
GSM5866864
H9 naïve 7d EZH2i
GSM5866865
H9 primed untreated
GSM5866866
H9 primed 7d EZH2i
This SuperSeries is composed of the following SubSeries:
GSE181241
PRC2 shields naive pluripotent cells from trophectoderm and mesoderm differentiation [ChIP-seq]
GSE181242
PRC2 shields naive pluripotent cells from trophectoderm and mesoderm differentiation [RNA-seq]
GSE196280
PRC2 shields naïve human pluripotent cells from trophectoderm and mesoderm differentiation [scRNA-seq]
Relations
BioProject
PRJNA751099
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE181244_RAW.tar
1.3 Gb
(http)
(custom)
TAR (of BW, MTX, TSV)
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