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Search Results (1,741)

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12 pages, 276 KiB  
Brief Report
Social Media Use and Fear of Missing out: An Exploratory Cross-Sectional Study in Junior High Students from Western Mexico
by Manuel Maciel-Saldierna, Ignacio Roberto Méndez-Garavito, Emmanuel Elizondo-Hernandez, Clotilde Fuentes-Orozco, Alejandro González-Ojeda, Sol Ramírez-Ochoa, Enrique Cervantes-Pérez, Berenice Vicente-Hernández, Sergio Jiram Vázquez-Sánchez, Jonathan Matías Chejfec-Ciociano and Gabino Cervantes-Guevara
Pediatr. Rep. 2024, 16(4), 1022-1033; https://doi.org/10.3390/pediatric16040087 (registering DOI) - 18 Nov 2024
Viewed by 239
Abstract
Background/Objectives: The increased use of social media in Mexico has given rise to the “fear of missing out” (FoMO) phenomenon, especially among adolescents. This study aimed to measure the extent of FoMO among junior high school students in the metropolitan area of Guadalajara, [...] Read more.
Background/Objectives: The increased use of social media in Mexico has given rise to the “fear of missing out” (FoMO) phenomenon, especially among adolescents. This study aimed to measure the extent of FoMO among junior high school students in the metropolitan area of Guadalajara, Mexico, during the COVID-19 pandemic. Additionally, this study explored the association between FoMO levels and demographic characteristics, as well as the type and frequency of social media use. Methods: A cross-sectional survey was conducted from November 2021 to January 2022 in four junior high schools. A total of 1264 students (656 females and 608 males) aged 11–16 years completed the Fear of Missing Out Scale, adapted to the Mexican context. Data on demographics, social media usage, and school shifts were collected. Statistical analyses were performed using t-tests, ANOVA, and correlation coefficients. Results: The mean FoMO score was 1.79 ± 0.64, with higher scores observed in females (p < 0.001) and students attending morning shifts (p = 0.001). Significant associations were found between higher FoMO scores and the use of social media platforms like Instagram, TikTok, and Pinterest (p < 0.001 for each). The most frequently used social media platforms were WhatsApp (1093), TikTok (828), and Instagram (583). Participants who used social media all week exhibited significantly higher FoMO scores than those who used it only on weekends (p < 0.001). Conclusions: FoMO is a significant phenomenon among junior high school students in Guadalajara, Mexico, particularly among females and those who use multiple social media platforms. The findings suggest a need for interventions to manage social media use and mitigate FoMO-related negative health outcomes in this population. Full article
(This article belongs to the Special Issue Mental Health and Psychiatric Disorders of Children and Adolescents)
14 pages, 2103 KiB  
Article
Initial Development of Automated Machine Learning-Assisted Prediction Tools for Aryl Hydrocarbon Receptor Activators
by Paulina Anna Wojtyło, Natalia Łapińska, Lucia Bellagamba, Emidio Camaioni, Aleksander Mendyk and Stefano Giovagnoli
Pharmaceutics 2024, 16(11), 1456; https://doi.org/10.3390/pharmaceutics16111456 - 15 Nov 2024
Viewed by 356
Abstract
Background: The aryl hydrocarbon receptor (AhR) plays a crucial role in immune and metabolic processes. The large molecular diversity of ligands capable of activating AhR makes it impossible to determine the structural features useful for the design of new potent modulators. Thus, [...] Read more.
Background: The aryl hydrocarbon receptor (AhR) plays a crucial role in immune and metabolic processes. The large molecular diversity of ligands capable of activating AhR makes it impossible to determine the structural features useful for the design of new potent modulators. Thus, in the field of drug discovery, the intricate nature of AhR activation necessitates the development of novel tools to address related challenges. Methods: In this study, quantitative structure–activity relationship (QSAR) models of classification and regression were developed with the objective of identifying the most effective method for predicting AhR activity. The initial dataset was obtained by combining the ChEMBL and WIPO databases which contained 978 molecules with EC50 values. The predictive models were developed using the automated machine learning platform mljar according to a 10-fold cross validation (10-CV) testing procedure. Results: The classification model demonstrated an accuracy value of 0.760 and F1 value of 0.789 for the test set. The root-mean-squared error (RMSE) was 5444, and the coefficient of determination (R2) was 0.208 for the regression model. The Shapley Additive Explanations (SHAP) method was then employed for a deeper comprehension of the impact of the variables on the model’s predictions. As a practical application for scientific purposes, the best performing classification model was then used to develop an AhR web application. This application is accessible online and has been implemented in Streamlit. Conclusions: The findings may serve as a foundation in prompting further research into the development of a QSAR model, which could enhance comprehension of the influence of ligand structure on the modulation of AhR activity. Full article
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<p>Scheme of dataset composition.</p>
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<p>Frequency of molecular weight (<b>a</b>) and logP (<b>b</b>) values in curated database.</p>
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<p>Distribution of EC<sub>50</sub> values in different ranges in classification model.</p>
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<p>Distribution of EC<sub>50</sub> values in different ranges in regression model.</p>
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<p>Confusion matrices for the training (<b>left</b>) and testing (<b>right</b>) sets, showing the classification performance for active and inactive molecules.</p>
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<p>A summary of the SHAP analysis for the most important features. The color bar represents the range of the feature values: low (blue) and high (red).</p>
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17 pages, 451 KiB  
Review
Comprehensive Management of Drunkorexia: A Scoping Review of Influencing Factors and Opportunities for Intervention
by Naroa Pérez-Ortiz, Elena Andrade-Gómez, Javier Fagundo-Rivera and Pablo Fernández-León
Nutrients 2024, 16(22), 3894; https://doi.org/10.3390/nu16223894 - 15 Nov 2024
Viewed by 401
Abstract
Background and objectives: Drunkorexia is a novel alcohol-related disorder prevalent among adolescents and young adults. Extensive research on the causes and their relationship is lacking. Identifying these aspects could improve early detection and management by healthcare professionals. The aim of this review was [...] Read more.
Background and objectives: Drunkorexia is a novel alcohol-related disorder prevalent among adolescents and young adults. Extensive research on the causes and their relationship is lacking. Identifying these aspects could improve early detection and management by healthcare professionals. The aim of this review was to identify the influencing factors of drunkorexia in adolescents and young adults, as well as the main opportunities for action by health professionals. Methods: A scoping review was conducted in June and July 2024 using three databases (Pubmed, Scopus, and Web of Science). A search and review protocol were established and registered in PROSPERO. The research questions were formulated in Patient, Concept, Context (PCC) formats for an adequate literature review. Original articles from January 2008 to July 2024 were included. Reviews, meta-analyses, and doctoral theses or academic texts were excluded. In the screening phase, a methodological assessment was conducted using the Joanna Briggs Institute’s (JBI) critical appraisal tools to support study eligibility. Depending on the study design, different checklists were used, and cross-sectional studies that received scores of 4/8 or higher, quasi-experimental designs that obtained 5/9 or higher, and qualitative research that obtained 5/10 or higher were accepted. Results: A total of 1502 studies were initially found. After applying the inclusion/exclusion criteria, 20 studies were selected. Complications of emotion regulation, both positive and negative metacognitive beliefs, inability to effectively manage stress and anxiety, symptoms of post-traumatic stress disorder, self-discipline and self-control, or differences in social expectations are predisposing factors for drunkorexia. The management of malnutrition and dehydration is an opportunity for clinical professionals to address this problem. In addition, mental health issues can provide another opportunity to manage heavy alcohol consumption. Conclusions: Drunkorexia must be recognized as a new disease to be addressed from a multidisciplinary perspective. In this way, increasing research on this trend would support prevention and intervention strategies. The use of digital platforms is essential for raising social awareness of this negative habit. Full article
(This article belongs to the Special Issue Alcohol Consumption and Human Health)
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<p>PRISMA flow chart.</p>
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27 pages, 311 KiB  
Article
The Impact of the Digital Divide on Labor Mobility and Sustainable Development in the Digital Economy
by Jiawei Chen and Zhijin Xu
Sustainability 2024, 16(22), 9944; https://doi.org/10.3390/su16229944 - 14 Nov 2024
Viewed by 508
Abstract
This paper explores the ways in which the digital divide affects labor in the context of sustainable development within the digital economy. It discusses the effects of major indicators such as digital infrastructure construction, digital industry development, and digital-inclusive finance on labor mobility. [...] Read more.
This paper explores the ways in which the digital divide affects labor in the context of sustainable development within the digital economy. It discusses the effects of major indicators such as digital infrastructure construction, digital industry development, and digital-inclusive finance on labor mobility. Although existing research has analyzed the ways in which the digital economy enhances economic vitality, there is insufficient research that investigates how the divide between digital access and usage can be effectively reduced to promote sustainable development. Therefore, through empirical analysis and mechanism research, this study used quantitative measurement and regression analysis methods to conduct an in-depth analysis of the dual effects of digital access and usage divides on the long-term marginal impact for labor. The results show that improving digital infrastructure such as broadband and fiber optic networks not only significantly boosts the economic vitality of underdeveloped areas, but also enhances their ability to participate in sustainable development. This enables more laborers to access new job opportunities and resources provided by the digital economy. While narrowing the digital use divide initially increases labor mobility, uneven dissemination may create barriers to information access, thus limiting mobility. Our research indicates that the development of the digital economy promotes cross-regional labor mobility, which is particularly prominent in the digital platform economy, facilitating more sustainable economic growth. After controlling for variables such as the level of economic development, this positive impact remains robust. This paper suggests that digital infrastructure construction and training in digital skills should be strengthened to narrow the digital divide and promote sustainable, balanced regional development and increased economic vitality. Full article
(This article belongs to the Section Economic and Business Aspects of Sustainability)
18 pages, 4159 KiB  
Article
Preclinical Implementation of matRadiomics: A Case Study for Early Malformation Prediction in Zebrafish Model
by Fabiano Bini, Elisa Missori, Gaia Pucci, Giovanni Pasini, Franco Marinozzi, Giusi Irma Forte, Giorgio Russo and Alessandro Stefano
J. Imaging 2024, 10(11), 290; https://doi.org/10.3390/jimaging10110290 - 14 Nov 2024
Viewed by 341
Abstract
Radiomics provides a structured approach to support clinical decision-making through key steps; however, users often face difficulties when switching between various software platforms to complete the workflow. To streamline this process, matRadiomics integrates the entire radiomics workflow within a single platform. This study [...] Read more.
Radiomics provides a structured approach to support clinical decision-making through key steps; however, users often face difficulties when switching between various software platforms to complete the workflow. To streamline this process, matRadiomics integrates the entire radiomics workflow within a single platform. This study extends matRadiomics to preclinical settings and validates it through a case study focused on early malformation differentiation in a zebrafish model. The proposed plugin incorporates Pyradiomics and streamlines feature extraction, selection, and classification using machine learning models (linear discriminant analysis—LDA; k-nearest neighbors—KNNs; and support vector machines—SVMs) with k-fold cross-validation for model validation. Classifier performances are evaluated using area under the ROC curve (AUC) and accuracy. The case study indicated the criticality of the long time required to extract features from preclinical images, generally of higher resolution than clinical images. To address this, a feature analysis was conducted to optimize settings, reducing extraction time while maintaining similarity to the original features. As a result, SVM exhibited the best performance for early malformation differentiation in zebrafish (AUC = 0.723; accuracy of 0.72). This case study underscores the plugin’s versatility and effectiveness in early biological outcome prediction, emphasizing its applicability across biomedical research fields. Full article
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<p>The workflow of the extended version of matRadiomics for preclinical studies.</p>
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<p>Mean relative error for each feature for the two different preprocessing methods.</p>
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<p>Mean relative error for bin count equal to one and equal to sixty-four.</p>
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<p>Mean relative error on features for the first and the second zebrafish dataset.</p>
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<p>Example of all_fish (<b>a</b>), heart (<b>b</b>), head (<b>c</b>), eye (<b>d</b>), yolk (<b>e</b>), and length (<b>f</b>) masks used in the study.</p>
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<p>(<b>a</b>) The window that appears to manually assign the name of the mask for the analysis of the first image. (<b>b</b>) The window with the list of masks used after the extraction of the features of the first image.</p>
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<p>Example of bar plot for selected features for all masks without all_fish mask. In red, the feature selected using the PBC method.</p>
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<p>Example of performance of the predictive model for the all_fish mask based on the ROC curve, precision and confusion matrix.</p>
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<p>The best results obtained for each mask, together with the corresponding image, the selected features, and the predictive ML model that achieves the highest performance.</p>
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12 pages, 776 KiB  
Article
Awareness and Perception of Hepatitis C Self-Testing in Nigeria: A National Survey of Stakeholders and the Public
by Victor Abiola Adepoju, Donald Chinazor Udah, Chinonye Alioha Ezenwa, Jamiu Ganiyu and Qorinah Estiningtyas Sakilah Adnani
Venereology 2024, 3(4), 199-210; https://doi.org/10.3390/venereology3040016 - 14 Nov 2024
Viewed by 326
Abstract
Background: Hepatitis C virus (HCV) infection presents a significant public health challenge globally, particularly in high-burden countries like Nigeria, where an estimated 2.4 million individuals are living with HCV. HCV self-testing (HCVST) can potentially bridge the significant diagnosis gap and help individuals to [...] Read more.
Background: Hepatitis C virus (HCV) infection presents a significant public health challenge globally, particularly in high-burden countries like Nigeria, where an estimated 2.4 million individuals are living with HCV. HCV self-testing (HCVST) can potentially bridge the significant diagnosis gap and help individuals to determine their HCV status in the privacy of their homes. It offers a solution to overcome barriers related to stigma and limited access to healthcare. In Nigeria, Self-testing for hepatitis C has only been implemented in a pilot research context. This study aimed to assess stakeholder and community awareness and perceptions of HCVST in Nigeria. The findings will provide insights that could inform effective policies and future scale-up programs for HCV control. Methods: A cross-sectional descriptive study was conducted using an online social media survey administered through SurveyMonkey. The survey was disseminated across social media platforms and groups between October–November 2023. Participants included Nigerians (both health professionals and non-health professionals) aged 18 years or older residing in any of the 36 states and the Federal Capital Territory (FCT). Data collected include sociodemographic characteristics, awareness and perceptions of HCVST, and perceived benefits and barriers. Results: Of 321 respondents, 94% perceived HCVST as highly important. While 77% of respondents knew about HIVST, only 58% had prior knowledge of HCVST. The analysis also showed that healthcare workers had greater awareness of HIV self-testing (82.3%) compared to non-healthcare workers (50.0%). Most respondents (88%) were highly likely to recommend HCVST and perceived it as a cost-effective alternative to traditional testing. Key perceived benefits included increased disease detection and control (67%), improved access to testing (21%), and reduced stigma (11%). In the unadjusted model, geographical zone (Southern Nigeria: cOR = 0.49, 95% CI: 0.30–0.77, p = 0.002), work experience (more than 20 years: cOR = 2.79, 95% CI: 1.11–8.07, p = 0.039), and prior awareness of HIV self-testing (cOR = 5.24, 95% CI: 3.00–9.43, p < 0.001) were significant predictors of HCVST awareness. However, in the adjusted model, only prior awareness of HIV self-testing remained significant (aOR = 4.77, 95% CI: 2.62–8.94, p < 0.001). Conclusions: The strong support for HCVST among stakeholders in Nigeria highlights its potential to enhance HCV control, especially within the broader context of infectious diseases like STIs. The greater awareness of HIV self-testing among healthcare workers compared to non-healthcare workers indicates the need for targeted awareness campaigns for non-healthcare populations. Addressing these awareness gaps, leveraging lessons from HIVST, and using existing infrastructure will be crucial. Prioritizing public education, outreach, and effective linkage to care will drive the impact of HCVST in achieving HCV elimination goals and position it as a model for expanding similar STI interventions in Nigeria. Full article
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<p>Distribution of health sector experience across professional roles.</p>
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<p>Respondents’ professional healthcare experience with previous self-testing and HIV knowledge.</p>
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24 pages, 2175 KiB  
Article
Synergistic Activation of VDR-RXR Heterodimers by Vitamin D and Rexinoids in Human Kidney and Brain Cells
by Mobin Emran Doost, Jennifer Hong, Jennifer E. Broatch, Michael T. Applegate, Carl E. Wagner, Pamela A. Marshall and Peter W. Jurutka
Cells 2024, 13(22), 1878; https://doi.org/10.3390/cells13221878 - 14 Nov 2024
Viewed by 386
Abstract
The active form of vitamin D, 1,25-dihydroxyvitamin D (1,25D), binds to the vitamin D receptor (VDR) with high affinity. The VDR then heterodimerizes with the retinoid X receptor (RXR) and associates with vitamin D response elements (VDREs) to regulate the transcription of target [...] Read more.
The active form of vitamin D, 1,25-dihydroxyvitamin D (1,25D), binds to the vitamin D receptor (VDR) with high affinity. The VDR then heterodimerizes with the retinoid X receptor (RXR) and associates with vitamin D response elements (VDREs) to regulate the transcription of target genes. Bexarotene (Bex) is an RXR ligand (rexinoid) developed to treat cutaneous T-cell lymphoma and is a putative therapeutic for other diseases. We postulate that VDR ligands (1,25D) and RXR ligands (Bex/analogs) can “synergize” to “super-activate” the VDR-RXR heterodimer. This “cross-talk” could allow disorders treated with high-dose Bex therapy (leading to significant adverse side effects) to instead be treated using both low-dose Bex and vitamin D. Thus, we designed experiments to examine the effect of both VDR and RXR ligands, alone and in combination, to activate VDR-RXR-mediated transcription. The goal was to determine if selected RXR-specific ligands can synergize with vitamin D to amplify RXR-VDR activity. The results demonstrate a synergistic effect with both Bex and 1,25D which could be further modulated by (1) the protein levels (or polymorphic version) of VDR present in the cell, (2) the concentration of the ligands, (3) the cellular “background” (e.g., brain cells versus kidney cells), (4) the nature of the VDRE platform, or (5) the type of rexinoid (Bex analogs). Our findings suggest that diseases that respond to treatment with either vitamin D, or with rexinoids, may be amenable to enhanced therapeutic potential by employing multi-ligand dosing via combinatorial therapy. Full article
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<p>Schematic of assays used in this study. (<b>A</b>) The VDRE (XDR3 or PER6) assay: The VDRE assay employed in this study involved treating HEK-293 or U87 cells with ethanol (as a negative control), 1,25D (as a positive control), and RXR ligands (such as bexarotene or analogs), either individually or in combination with 1,25D. The extent of VDRE-mediated transcriptional activation, using direct repeat-3 as depicted in the figure, or another class of VDREs with an everted repeat (PER6), was assessed using light-based luciferase assays. For the experiments with exogenous VDR, cells were additionally transfected with VDR. (<b>B</b>) The mammalian 2-hybrid (M2H) assay: The M2H assay employed in this study involved treating HEK-293 cells with ethanol (as a negative control), 1,25D (as a positive control), and RXR ligands (such as bexarotene or analogs), either individually or in combination with 1,25D. The extent of M2H-mediated transcriptional activation was assessed using light-based luciferase assays.</p>
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<p>Structures and characteristics of bexarotene and additional rexinoids used in this study [<a href="#B18-cells-13-01878" class="html-bibr">18</a>,<a href="#B20-cells-13-01878" class="html-bibr">20</a>,<a href="#B33-cells-13-01878" class="html-bibr">33</a>].</p>
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<p>VDR and RXR XDR3 VDRE transcriptional activation. (<b>A</b>). XDR3 assay with endogenous VDR. Biological evaluation of 1,25D and bexarotene/analogs via a VDR-RXR (XDR3) VDRE–luciferase-based system in HEK-293 cells with endogenous VDR. All compounds were dosed at 10 nM. (<b>B</b>). XDR3 assay with exogenous VDR. Biological evaluation of 1,25D and bexarotene/analogs via a VDR-RXR (XDR3) VDRE–luciferase-based system in HEK-293 cells with overexpressed VDR (M4 polymorphism). The treatment groups are compared to the positive control 1,25D that was set to 100%, using an ANOVA with post hoc Dunnett’s method corrected <span class="html-italic">t</span>-tests. All compounds were dosed at 10 nM. An asterisk (*) indicates a statistically significant difference for the rexinoid treatment compared to the ethanol control (<span class="html-italic">p</span> &lt; 0.05). A double asterisk (**) indicates a statistically significant difference between the rexinoid + 1,25D treatment and the 1,25D control (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>VDR and RXR PER6 VDRE transcriptional activation. (<b>A</b>). PER6 assay with endogenous VDR. Biological evaluation of 1,25D and bexarotene/analogs via a VDR-RXR (PER6) VDRE–luciferase-based system in HEK-293 cells with endogenous VDR. The treatment groups are compared to the positive control 1,25D that was set to 100%. All compounds were dosed at 10 nM. (<b>B</b>). PER6 with exogenous VDR. Biological evaluation of 1,25D and bexarotene/analogs via a VDR-RXR (PER6) VDRE–luciferase-based system in HEK-293 cells with overexpressed VDR (M4 polymorphism). The treatment groups are compared to the positive control 1,25D that was set to 100%, using an ANOVA with post hoc Dunnett’s method corrected <span class="html-italic">t</span>-tests. All compounds were dosed at 10 nM. An asterisk (*) indicates a statistically significant difference for the rexinoid treatment compared to the ethanol control (<span class="html-italic">p</span> &lt; 0.05). A double asterisk (**) indicates a statistically significant difference between the rexinoid + 1,25D treatment and the 1,25D control (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Common VDR polymorphism M1 RXR XDR3 transcriptional activation with exogenous VDR. Bexarotene or <b>CD3254</b> was tested via a VDR-RXR (XDR3) VDRE–luciferase-based system in HEK-293 cells with the expression of the M1 polymorphism of VDR. The treatment groups are compared to the positive control of 10 nM 1,25D that was set to 100%, using an ANOVA with post hoc Tukey–Kramer method corrected <span class="html-italic">t</span>-tests. All compounds were dosed at 10 nM. An asterisk (*) indicates a statistically significant difference for the rexinoid treatment compared to the ethanol control (<span class="html-italic">p</span> &lt; 0.0001). A double asterisk (**) indicates a statistically significant difference between the rexinoid + 1,25D treatment and the 1,25D control (10 nM 1,25D + 10 nM Bex <span class="html-italic">p</span> &lt; 0.0014; 10 nm 1,25D + 10nM <b>CD3254</b> <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Effect of concentrations of 1,25D on XDR3 VDRE transcriptional activation (endogenous M4 VDR). (<b>A</b>) 1,25D concentration assay with bexarotene or <b>CD3254</b> at two concentrations of 1,25D, 1 nM and 10 nM. Biological evaluation of 1,25D and bexarotene/<b>CD3254</b> via a VDR-RXR (XDR3) VDRE–luciferase-based system in HEK-293 cells. The treatment groups are compared to the positive control 10 nM 1,25D (set to 100%) or to 1 nM 1,25D, using an ANOVA with post hoc Tukey–Kramer method corrected <span class="html-italic">t</span>-tests. An asterisk (*) indicates a statistically significant difference between the ethanol control and the 10 nM rexinoid treatment (Bex <span class="html-italic">p</span> = 0.0004 and <b>CD3254</b> <span class="html-italic">p</span> &lt; 0.0001). Double asterisks (**) indicate a statistically significant difference between the 1 nM 1,25D control and 1 nM 1,25D+rexinoid (<span class="html-italic">p</span> &lt; 0.0001). Triple asterisks (***) indicate a statistically significant difference between the 10 nM 1,25D control and 10 nM 1,25D+rexinoid (<span class="html-italic">p</span> &lt; 0.0001). (<b>B</b>) Analysis of fold changes in differing concentrations of 1,25D. A ratio was calculated for VDR activation with vitamin D concentrations compared to their appropriate control group. Yellow bars indicate Bex and pink bars indicate <b>CD3254</b>. For synergy, the equation used was ([VDRE activity of rexinoid+1,25D]/[VDRE activity of 1,25D] + [VDRE activity of rexinoid alone]) at each individual 1,25D concentration.</p>
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<p>Effect of concentrations of 1,25D on XDR3 VDRE transcriptional activation (endogenous M4 VDR). (<b>A</b>) 1,25D concentration assay with bexarotene or <b>CD3254</b> at two concentrations of 1,25D, 1 nM and 10 nM. Biological evaluation of 1,25D and bexarotene/<b>CD3254</b> via a VDR-RXR (XDR3) VDRE–luciferase-based system in HEK-293 cells. The treatment groups are compared to the positive control 10 nM 1,25D (set to 100%) or to 1 nM 1,25D, using an ANOVA with post hoc Tukey–Kramer method corrected <span class="html-italic">t</span>-tests. An asterisk (*) indicates a statistically significant difference between the ethanol control and the 10 nM rexinoid treatment (Bex <span class="html-italic">p</span> = 0.0004 and <b>CD3254</b> <span class="html-italic">p</span> &lt; 0.0001). Double asterisks (**) indicate a statistically significant difference between the 1 nM 1,25D control and 1 nM 1,25D+rexinoid (<span class="html-italic">p</span> &lt; 0.0001). Triple asterisks (***) indicate a statistically significant difference between the 10 nM 1,25D control and 10 nM 1,25D+rexinoid (<span class="html-italic">p</span> &lt; 0.0001). (<b>B</b>) Analysis of fold changes in differing concentrations of 1,25D. A ratio was calculated for VDR activation with vitamin D concentrations compared to their appropriate control group. Yellow bars indicate Bex and pink bars indicate <b>CD3254</b>. For synergy, the equation used was ([VDRE activity of rexinoid+1,25D]/[VDRE activity of 1,25D] + [VDRE activity of rexinoid alone]) at each individual 1,25D concentration.</p>
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<p>Mammalian 2-hybrid analysis of differing 1,25D concentrations and rexinoids. (<b>A</b>) VDR-RXR heterodimerization in a mammalian 2-hybrid system. Biological evaluation of 1,25D, bexarotene, and <b>CD3254</b> via a VDR-RXR M2H-based system in HEK-293 cells. The treatment groups are compared to the positive control 10 nM 1,25D (set to 100%) or to 1 nM 1,25D. The treatment groups were compared for their efficacy alone and in combination with 1 nM or 10 nM 1,25D, using an ANOVA with post hoc Tukey–Kramer method corrected <span class="html-italic">t</span>-tests. The concentration of the rexinoid treatment groups was 10 nM. An asterisk (*) indicates a statistically significant difference between the 1 nM 1,25D control and 1 nM 1,25D+rexinoid (<span class="html-italic">p</span> = 0.0419). Double asterisks (**) indicate a statistically significant difference between the 10 nM 1,25D control and 10 nM 1,25D+rexinoid (<span class="html-italic">p</span> = 0.0089). (<b>B</b>) Analysis of fold changes in differing concentrations of 1,25D. A ratio was calculated for VDR activation with vitamin D concentrations compared to their appropriate control group. Yellow bars indicate Bex and pink bars indicate <b>CD3254</b>. For synergy, the equation used was ([M2H reporter activity of rexinoid+1,25D]/[M2H reporter activity of 1,25D] + [M2H reporter activity of rexinoid alone]) at each individual 1,25D concentration.</p>
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<p>VDR and RXR XDR3 VDRE transcriptional activation in U87 cells with exogenous VDR (M4). Biological evaluation of 1,25D and bexarotene/<b>CD3254</b> via a VDR-RXR (XDR3) VDRE–luciferase-based system in U87 cells with the addition of exogenous M4 VDR cDNA. The treatment groups are compared to the positive control 1,25D that was set to 100%, using an ANOVA with post hoc Tukey–Kramer method corrected <span class="html-italic">t</span>-tests. All compounds were dosed at 10 nM. An asterisk (*) indicates a statistically significant difference between the ethanol control and the 10 nM rexinoid treatment (<span class="html-italic">p</span> = 0.025). Double asterisks (**) indicate a statistically significant difference between the 10 nM 1,25D control versus 10 nM 1,25D+rexinoid (Bex or <b>CD3254</b>) (10 nM 1,25D + 10 nM Bex, <span class="html-italic">p</span> = 0.0032; 10 nM 1,25D + 10 nM <b>CD3254</b>, <span class="html-italic">p</span> = 0.0025).</p>
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<p>PCA of physiochemical properties of rexinoids used in this study. Properties as outlined in <a href="#cells-13-01878-t003" class="html-table">Table 3</a> were utilized to generate a PCA plot. Unit variance scaling is applied to rows; SVD with imputation is used to calculate principal components. X and Y axes show principal component 1 and principal component 2 which explain 65.6% and 20.7% of the total variance, respectively. Prediction ellipses are such that with a probability of 0.95, a new observation from the same group will fall inside the ellipse. N = 6 data points.</p>
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27 pages, 7418 KiB  
Article
Assessment of CCMP in Capturing High Winds with Respect to Individual Satellite Datasets
by Pingping Rong and Hui Su
Remote Sens. 2024, 16(22), 4215; https://doi.org/10.3390/rs16224215 - 12 Nov 2024
Viewed by 381
Abstract
High-wind structures were identified in the Cross-Calibrated Multi-Platform (CCMP) ocean wind vector reanalysis for comparison with winds measured by satellite radiometers, scatterometers, and synthetic aperture radar (SAR) instruments from February to October 2023. The comparison aims to evaluate bias, uncertainty, and spatial correlations [...] Read more.
High-wind structures were identified in the Cross-Calibrated Multi-Platform (CCMP) ocean wind vector reanalysis for comparison with winds measured by satellite radiometers, scatterometers, and synthetic aperture radar (SAR) instruments from February to October 2023. The comparison aims to evaluate bias, uncertainty, and spatial correlations with the goal of enhancing the accuracy of ocean wind datasets during tropical cyclones (TCs). In 10° longitude × 10° latitude blocks, each containing a TC, Soil Moisture Active Passive (SMAP) and Advanced Microwave Scanning Radiometer 2 (AMSR2) winds are 6.5 and 4.8% higher than CCMP, while Advanced Scatterometer (ASCATB) is 0.8% lower. For extratropical cyclones, AMSR2 and SMAP also show stronger winds with a 5% difference, and ASCATB is about 0.3% weaker compared to CCMP. The comparison between SAR and CCMP for TC winds, sampled at the locations and time frames of SAR tiles, indicates that SAR winds around TCs are about 9% higher than CCMP winds. Using empirically defined TC structural indices, we find that the TCs observed by CCMP are shifted in locations and lack a compact core region. A Random Forest (RF) regressor was applied to TCs in CCMP with corresponding SAR observations, nearly correcting the full magnitude of low bias in CCMP statistically, with a 15 m/s correction in the core region. The hierarchy of importance among the predictors is as follows: CCMP wind speed (62%), distance of SAR pixels to the eye region (21%) and eye center (7%), and distance of CCMP pixels to the eye region (5%) and eye center (5%). Full article
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<p>Demonstration of local time (LT) coverages for SMAP (<b>a</b>), ASCATB (<b>b</b>), and ASMR2 (<b>c</b>) on 1 September 2023.</p>
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<p>(<b>a</b>–<b>d</b>) Demonstration of local time (LT) coverages for CYGNSS at the indicated UT time plus or minus 0.75 hours (as shown in each title), on 1 September 2023.</p>
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<p>Each pair of global hourly (4 UT hours per day from February to October 2023) pixel-by-pixel (0.25° × 0.25°) ocean wind speed maps are compared between CCMP and AMSR2, SMAP, ASCAT2, or CYGNSS, and then statistical moments of all such pairs are shown in histograms, represented by different colors. (<b>a</b>–<b>c</b>) Histograms of the mean, standard deviation (STD), and standard error of the mean (SEM) of the percent differences. (<b>d</b>) Histograms of spatial correlation coefficients of these hourly maps. Note that in the legend, the median and standard deviation describe the current histogram’s median and spread.</p>
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<p>CCMP is linearly interpolated from the 4 UTs onto 0.5-hourly intervals, and same statistical moments of percent differences between CCMP and SMAP are calculated to compare with the results based on the 4 UTs per day. The maxima of the red histograms are adjusted (8–10 times) to match the blue curves. The y-axis numbers correspond to the blue histogram. The (<b>a</b>–<b>d</b>) resemble those in <a href="#remotesensing-16-04215-f003" class="html-fig">Figure 3</a>.</p>
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<p>(<b>a</b>) A global map of CCMP for a selected day to demonstrate the distribution of high-wind structures. Both Saola and Haikui (within the white rectangle) are notable, and a magnified regional map is shown in (<b>b</b>).</p>
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<p>Same as <a href="#remotesensing-16-04215-f003" class="html-fig">Figure 3</a>, except that the individual cases are 10° Lon × 10° Lat blocks identified as containing high-wind structures (i.e., TCs) in the low-latitude region between 35°S and 35°N. CYGNSS is not included because, based on our criteria, no high-wind features were identified. The (<b>a</b>–<b>d</b>) resemble those in <a href="#remotesensing-16-04215-f003" class="html-fig">Figure 3</a>.</p>
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<p>AMSR2 maps (<b>top</b>) and CCMP maps (<b>bottom</b>) at coincidences for the five selected high spatial correlation cases, based on the results in <a href="#remotesensing-16-04215-f006" class="html-fig">Figure 6</a>.</p>
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<p>Same as <a href="#remotesensing-16-04215-f007" class="html-fig">Figure 7</a>, except for SMAP.</p>
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<p>Same as <a href="#remotesensing-16-04215-f007" class="html-fig">Figure 7</a>, except for ASCATB.</p>
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<p>Same as <a href="#remotesensing-16-04215-f006" class="html-fig">Figure 6</a>, except for the mid-high latitude region south of 35°S or north of 35°N. The (<b>a</b>–<b>d</b>) resemble those in <a href="#remotesensing-16-04215-f003" class="html-fig">Figure 3</a>.</p>
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<p>AMSR2 maps (<b>top</b>) and CCMP maps (<b>bottom</b>) at coincidences for the five selected high spatial correlation cases in the mid-high latitude region, based on the results in <a href="#remotesensing-16-04215-f010" class="html-fig">Figure 10</a>.</p>
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<p>Same as <a href="#remotesensing-16-04215-f011" class="html-fig">Figure 11</a>, except for SMAP.</p>
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<p>Same as <a href="#remotesensing-16-04215-f011" class="html-fig">Figure 11</a>, except for ASCATB.</p>
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<p>Histograms of the statistics for the SAR and CCMP pixel-by-pixel ocean wind speed comparisons over individual tiles. (<b>a</b>,<b>b</b>) The histograms of tile-wise means, STDs, and SEMs of the pixel-by-pixel percent differences. (<b>c</b>) Spatial correlations of CCMP and SAR ocean wind speed over individual SAR tiles. CCMP values are sampled over the SAR tiles, and the SAR data are resampled onto the CCMP’s grid.</p>
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<p>Same as <a href="#remotesensing-16-04215-f006" class="html-fig">Figure 6</a>, except with a block size of 5° × 5°, to compare with <a href="#remotesensing-16-04215-f014" class="html-fig">Figure 14</a>.</p>
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<p>Selected SAR (<b>top</b>) and CCMP (<b>bottom</b>) TC maps at coincidences with spatial correlations greater than 0.9.</p>
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<p>Demonstration of the TC eye center and eye region identification routines. The black crosses are filled into the detected eye-region size, and the red circle marks the eye center position, which is generally the pixel that possesses the lowest ocean wind speed. (<b>a</b>) and (<b>b</b>) here correspond to (d) and (i) in <a href="#remotesensing-16-04215-f016" class="html-fig">Figure 16</a>, except that they are magnified.</p>
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<p>(<b>a</b>–<b>e</b>) SAR and CCMP TC equivalent radii for different ocean wind speed levels (2.0 m/s intervals) for the five pairs of maps shown in <a href="#remotesensing-16-04215-f016" class="html-fig">Figure 16</a>.</p>
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<p>TC structure comparisons between SAR and CCMP, via histograms of differences in TC eye-center locations (<b>a</b>), eye-region sizes (<b>b</b>), equivalent radii (<b>c</b>), and S–N and W–E asymmetries (<b>d</b>), using all coincident pairs throughout February–October 2023.</p>
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<p>The performance levels of the RF model described by the statistical moments of the scatter plots. (<b>a</b>) Statistical moments when the model is applied to the training set (which are the 75% of ocean wind speed values for the selected set of TCs for model training). (<b>b</b>) The same statistics for the remaining 25% of the wind speed values for the same set of TCs. (<b>c</b>) The same statistics, except for the result from applying the model to a blind TC set. The ty1n2 in the title refers to the case when all predictors in Table 2 are used for the RF model training.</p>
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<p>Histograms of the statistics when the RF model is applied to the individual TC tiles in the blind set. In each panel, the comparison between different curves illustrates the improvement in the predicted ocean wind speed maps relative to the CCMP maps, assuming that the SAR maps are considered the true states, in terms of accuracy (<b>a</b>), bias (<b>b</b>), correlation coefficient (<b>c</b>), and STD of the differences (<b>d</b>).</p>
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<p>Three selected ocean wind speed tiles (in rows 1st–3rd) are used to demonstrate the performance of the ty1, ty2, and ty1n2 (3rd–5th columns) relative to SAR maps (1st column) and the CCMP maps (2nd column).</p>
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13 pages, 5412 KiB  
Article
Supervised Contrastive Learning for 3D Cross-Modal Retrieval
by Yeon-Seung Choo, Boeun Kim, Hyun-Sik Kim and Yong-Suk Park
Appl. Sci. 2024, 14(22), 10322; https://doi.org/10.3390/app142210322 - 10 Nov 2024
Viewed by 425
Abstract
Interoperability between different virtual platforms requires the ability to search and transfer digital assets across platforms. Digital assets in virtual platforms are represented in different forms or modalities, such as images, meshes, and point clouds. The cross-modal retrieval of three-dimensional (3D) object representations [...] Read more.
Interoperability between different virtual platforms requires the ability to search and transfer digital assets across platforms. Digital assets in virtual platforms are represented in different forms or modalities, such as images, meshes, and point clouds. The cross-modal retrieval of three-dimensional (3D) object representations is challenging due to data representation diversity, making common feature space discovery difficult. Recent studies have been focused on obtaining feature consistency within the same classes and modalities using cross-modal center loss. However, center features are sensitive to hyperparameter variations, making cross-modal center loss susceptible to performance degradation. This paper proposes a new 3D cross-modal retrieval method that uses cross-modal supervised contrastive learning (CSupCon) and the fixed projection head (FPH) strategy. Contrastive learning mitigates the influence of hyperparameters by maximizing feature distinctiveness. The FPH strategy prevents gradient updates in the projection network, enabling the focused training of the backbone networks. The proposed method shows a mean average precision (mAP) increase of 1.17 and 0.14 in 3D cross-modal object retrieval experiments using ModelNet10 and ModelNet40 datasets compared to state-of-the-art (SOTA) methods. Full article
(This article belongs to the Section Computing and Artificial Intelligence)
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<p>Traditional SimCLR [<a href="#B8-applsci-14-10322" class="html-bibr">8</a>] method using single modal data augmentations (<b>left</b>). The augmented data (marked with symbols ′ and ″) are adapted in supervised learning to aggregate representation features. Supervised contrastive learning (SupCon) [<a href="#B14-applsci-14-10322" class="html-bibr">14</a>] adapted SimCLR into supervised learning tasks in single modality (<b>middle</b>). Our method, CSupCon, applied contrastive learning to cross-modal tasks (<b>right</b>). The numbers represent different data instances. The rectangles and circles represent different modalities, and the different colors represent different classes. The blue and red lines indicate positive and negative instances.</p>
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<p>Overview of the proposed method. In the feature extraction stage, an augmented data instance <math display="inline"><semantics> <msup> <mi>x</mi> <mo>′</mo> </msup> </semantics></math> and another augmented data instance <math display="inline"><semantics> <msup> <mi>x</mi> <mrow> <mo>″</mo> </mrow> </msup> </semantics></math> from input <span class="html-italic">x</span>, embedding features <math display="inline"><semantics> <msup> <mi>v</mi> <mo>′</mo> </msup> </semantics></math> and <math display="inline"><semantics> <msup> <mi>v</mi> <mrow> <mo>″</mo> </mrow> </msup> </semantics></math>, are extracted from each modality using its corresponding backbone network. The proposed method, cross-modal supervised contrastive learning (CSupCon), pushes the features away for different classes and pulls the features towards each other for the same classes. On the other side, in the fixed projection head (FPH) strategy, the <math display="inline"><semantics> <msup> <mi>v</mi> <mo>′</mo> </msup> </semantics></math> features are used to predict semantic labels for classification.</p>
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<p>The visualization result of feature clustering from the ModelNet40 test data.</p>
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<p>The results of cross-modal retrieval using the proposed method from the ModelNet40 test data.</p>
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<p>The result of cross-modal retrieval on the ModelNet40 test data by class. The illustration depicts sorted classes based on the amount of training data and their corresponding mAPs. In general, results are not favorable for classes with a small (less than 200 in this example) number of training data (i.e., classes included in the blue dotted rectangle).</p>
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22 pages, 49634 KiB  
Article
Construction Method of a Digital-Twin Simulation System for SCARA Robots Based on Modular Communication
by Zihan Zhang, Qihui Guo, Maksim A. Grigorev and Ivan Kholodilin
Sensors 2024, 24(22), 7183; https://doi.org/10.3390/s24227183 - 9 Nov 2024
Viewed by 430
Abstract
Due to the high cost of robots, the algorithm testing cost for physical robots is high, and the construction of motion control programs is complex, with low operation fault tolerance. To address this issue, this paper proposes a low-cost, cross-platform SCARA robot digital-twin [...] Read more.
Due to the high cost of robots, the algorithm testing cost for physical robots is high, and the construction of motion control programs is complex, with low operation fault tolerance. To address this issue, this paper proposes a low-cost, cross-platform SCARA robot digital-twin simulation system based on the concept of digital twins. This method establishes a 5D architecture based on the characteristics of different platforms, classifies data and integrates functions, and designs a data-processing layer for motion trajectory calculation and data storage for a virtual-reality robot. To address the complexity of data interaction under different cross-platform communication forms, an editable, modular, cross-platform communication system is constructed, and various control commands are encapsulated into simple programming statements for easy invocation. Experimental results showed that, based on modular communication control, users can accurately control data communication and synchronous motion between virtual and physical models using simple command statements, reducing the development cost of control algorithms. Meanwhile, the virtual-robot simulation system, as a data mapping of the real experimental platform, accurately simulated the physical robot’s operating state and spatial environment. The robot algorithms tested using the virtual simulation system can be successfully applied to real robot platforms, accurately reproducing the operating results of the virtual system. Full article
(This article belongs to the Section Sensors and Robotics)
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<p>Platform structure diagram.</p>
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<p>SCARA robot structure diagram.</p>
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<p>Distribution diagram of the robot physical platform and virtual system structure.</p>
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<p>Cross-platform data transmission and reception architecture.</p>
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<p>Flowchart of information integration and identification.</p>
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<p>Cross-platform data transfer module build diagram.</p>
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<p>Virtual robot joint relationship settings and data monitoring.</p>
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<p>Flowchart of digital mirror and monitoring.</p>
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<p>SCARA robot structure and D–H coordinate system.</p>
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<p>SCARA robot motion plane diagram.</p>
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<p>Flowchart of digital control.</p>
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<p>Operational logic diagram of the gripper’s actions.</p>
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<p>Training logic diagram of digital prediction and interaction.</p>
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<p>Virtual reality synchronization experiment results. (<b>a</b>–<b>c</b>) Three groups of experiments on the effect of the virtual robot on the operation state mapping of the physical robot. (<b>d</b>–<b>f</b>) Three groups of experiments in which the virtual robot controls the operation of the physical robot.</p>
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<p>Comparison of the operation effects of the traditional data transmission architecture and the improved data transmission system in this paper.</p>
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<p>Operational logic of robot sorting simulation experiment.</p>
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<p>Virtual robot simulation results and physical-robot operational results. (<b>a</b>–<b>c</b>) The virtual robot simulates the planning motion and loads it into the physical robot in three groups of experiments. (<b>d</b>–<b>f</b>) Comparison of motion trajectory between virtual-robotic gripper and physical-robotic gripper in three groups of experiments.</p>
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24 pages, 5699 KiB  
Article
Synthetic Wind Estimation for Small Fixed-Wing Drones
by Aman Sharma, Gabriel François Laupré, Pasquale Longobardi and Jan Skaloud
Atmosphere 2024, 15(11), 1339; https://doi.org/10.3390/atmos15111339 - 8 Nov 2024
Viewed by 407
Abstract
Wind estimation is crucial for studying the atmospheric boundary layer. Traditional methods such as weather balloons offer limited in situ capabilities; besides an Air Data System (ADS) combined with inertial measurements and satellite positioning is required to estimate the wind on fixed-wing drones. [...] Read more.
Wind estimation is crucial for studying the atmospheric boundary layer. Traditional methods such as weather balloons offer limited in situ capabilities; besides an Air Data System (ADS) combined with inertial measurements and satellite positioning is required to estimate the wind on fixed-wing drones. As pressure probes are an important constituent of an ADS, they are susceptible to malfunctioning or failure due to blockages, thus affecting the capability of wind sensing and possibly the safety of the drone. This paper presents a novel approach, using low-fidelity aerodynamic models of drones to estimate wind synthetically. In our work, the aerodynamic model parameters are derived from post-processed flight data, in contrast to existing approaches that use expensive wind tunnel calibration for identifying the same. In sum, our method integrates aerodynamic force and moment models into a Vehicle Dynamic Model (VDM)-based navigation filter to yield a synthetic wind estimate without relying on an airspeed sensor. We validate our approach using two geometrically distinct drones, each characterized by a unique aerodynamic model and different quality of inertial sensors, altogether tested across several flights. Experimental results demonstrate that the proposed cross-platform method provides a synthetic wind velocity estimate, thus offering a practical backup to traditional techniques. Full article
(This article belongs to the Section Atmospheric Techniques, Instruments, and Modeling)
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<p>VDM-based navigation system. Image courtesy: Ref. [<a href="#B71-atmosphere-15-01339" class="html-bibr">71</a>].</p>
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<p>Aerodynamic calibration procedure. Image courtesy: Ref. [<a href="#B4-atmosphere-15-01339" class="html-bibr">4</a>].</p>
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<p>TP2 payload: (<b>left</b>) CAD model; (<b>right</b>) practical realization.</p>
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<p>Drones: (<b>top</b>) <span class="html-italic">TP2</span>; (<b>bottom</b>) <span class="html-italic">Concorde S</span>.</p>
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<p>Comparison of wind estimated by VDM and INS/GNSS/Pitot fusion for <span class="html-italic">TP-2</span>.</p>
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<p>Comparison of wind estimated by VDM and INS/GNSS/Pitot fusion for <span class="html-italic">TP-2</span>.</p>
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<p>Wind residual between VDM and INS/GNSS/Pitot fusion for <span class="html-italic">TP-2</span>.</p>
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<p>Zoomed-in view of the residual error.</p>
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<p>Comparison of wind estimated by VDM and INS/GNSS/Pitot fusion for <span class="html-italic">Concorde S</span>.</p>
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<p>Wind residual between VDM and INS/GNSS/Pitot fusion for <span class="html-italic">Concorde S</span>.</p>
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<p>Wind estimated using incorrect VDM parameters for <span class="html-italic">TP2</span>—STIM13.</p>
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<p>eBeeX drone.</p>
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<p>Wind estimated by eBeex.</p>
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22 pages, 1111 KiB  
Article
Digitally Driven Urban Governance: Framework and Evaluation in China
by Wei Li, Jun Zhang, Xiaojie Guo, Yang Zhou, Fan Yang and Ruilin Li
Sustainability 2024, 16(22), 9673; https://doi.org/10.3390/su16229673 - 6 Nov 2024
Viewed by 475
Abstract
With the rapid development of digital technology, the role of digitalisation in urban governance continues to emerge. Building a theoretical analysis framework and evaluation system of digitally driven urban governance has important theoretical and practical significance for stimulating the efficiency of digital technology [...] Read more.
With the rapid development of digital technology, the role of digitalisation in urban governance continues to emerge. Building a theoretical analysis framework and evaluation system of digitally driven urban governance has important theoretical and practical significance for stimulating the efficiency of digital technology tools and improving the energy level of urban digital governance. This paper aims to explore the mechanism of urban governance enabled by digital technology, innovatively change the previous thinking mode that only attaches importance to facility construction and e-government platforms, adopt ecological thinking, and comprehensively consider the role of “soft elements” such as strategic support, industrial support, the security environment, talent support, and the market environment. Then, the extreme value variance method and the coefficient of variation method are used to calculate the overall capacity and secondary index scores of each city, and the standard deviation of secondary index scores is used to represent the sub-environmental balance of the cross-sectional data of China’s provinces. In order to further explore which indicators restrict the improvement of China’s urban digital governance capacity, this study also constructs an obstacle degree model. The results show the following: (1) The overall capability of China’s digitally driven urban governance is low, with a total score of 27.25, indicating that China’s digitally driven urban governance is in its infancy. (2) There is a significant development imbalance among Chinese provinces, with Beijing ranking first with a score of 81.16, and Tibet, Qinghai, Xinjiang, Heilongjiang, and Ningxia scoring less than 13.30 points, ranking as the bottom 5 among the 31 provinces. (3) The shortcomings of talent support, industrial support, and the security environment restrict the improvement of the entire digital ecological governance ability. Full article
(This article belongs to the Special Issue Data-Driven Sustainable Development: Techniques and Applications)
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<p>Mechanism map of the digitalisation driving urban governance from the perspective of the ecosystem. Source: Author’s calculations.</p>
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<p>Heat map of empirical scores of digitally driven urban governance capability in China. Note: The above maps are based on the standard map No. GS (2020) 4619 from the standard map service website of the Ministry of Natural Resources, and the base map has not been modified.</p>
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<p>Balance of digitally driven urban governance sub-environments by province (used to determine whether the development of seven secondary dimensions in a city is balanced). Source: Author’s calculations.</p>
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9 pages, 379 KiB  
Article
Discovery of RNA Biomarkers for Prostate Cancer Using Cross-Platform Transcriptomics
by Wieke C. H. Visser, Hans de Jong, Frank P. Smit, Jolly Shrivastava, Jason C. Poole, William P. J. Leenders, Willem J. G. Melchers, Peter F. A. Mulders and Jack A. Schalken
Int. J. Mol. Sci. 2024, 25(22), 11907; https://doi.org/10.3390/ijms252211907 - 6 Nov 2024
Viewed by 402
Abstract
Microarray and Single-Molecule Molecular Inversion Probe (smMIP)-based targeted RNA sequencing are two RNA profiling platforms for identifying disease-associated biomarkers. The microarray uses a GeneChip array with oligonucleotide probes to measure expression levels across thousands of genes, while smMIPs capture and quantify RNA transcripts [...] Read more.
Microarray and Single-Molecule Molecular Inversion Probe (smMIP)-based targeted RNA sequencing are two RNA profiling platforms for identifying disease-associated biomarkers. The microarray uses a GeneChip array with oligonucleotide probes to measure expression levels across thousands of genes, while smMIPs capture and quantify RNA transcripts and transcript variants via next-generation sequencing. To evaluate the strengths and weaknesses of both platforms, a comparative gene expression profiling study was conducted using RNA samples from 52 prostate tissues (normal, benign prostatic hyperplasia (BPH) and various prostate cancer (PCa) grades). Of all genes covered by both platforms, only 35% of the expression levels aligned, with 45% showing discrepancies. Both platforms identified the same 17 genes as potential PCa biomarkers. Microarray analysis identified an additional 253 genes that were not covered or not identified by smMIP technology, while smMIP technology identified eight markers not covered or not identified in the microarray core gene analysis, including fusion genes and splice variants. For high-grade prostate cancer (HG-PCa), the smMIP-method identified 8 markers, and the microarray identified 17 markers, with FOLH1, FAP and CLDN3 being common across both platforms. The choice of RNA expression analysis technology depends on research objectives; microarray technology is useful for the evaluation of a wide range of genes but has low throughput. In contrast, smMIP-based RNA sequencing enables sensitive analysis with minimal RNA in a medium- to high-throughput setting. Full article
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<p>Distribution of correlation values (R<sup>2</sup>) of the correlation of RNA expression levels between smMIP and the microarray. The figure presents the frequency distribution of R<sup>2</sup>-values reflecting the correlation between gene expression measurements across the set of genes that were measured with both the smMIP platform and the microarray platform. In total, expression levels of 496 genes were measured on both platforms. Good correlations were observed for 178 genes (35.89%), with R<sup>2</sup> &gt; 0.7. Moderate correlations (R<sup>2</sup> between 0.5 and 0.7) were observed for 93 genes (18.75%) and weak correlations (R<sup>2</sup> &lt; 0.5) were shown for 225 genes (45.36%).</p>
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19 pages, 2735 KiB  
Article
Hierarchical Spectral–Spatial Transformer for Hyperspectral and Multispectral Image Fusion
by Tianxing Zhu, Qin Liu and Lixiang Zhang
Remote Sens. 2024, 16(22), 4127; https://doi.org/10.3390/rs16224127 - 5 Nov 2024
Viewed by 442
Abstract
This paper presents the Hierarchical Spectral–Spatial Transformer (HSST) network, a novel approach applicable to both drone-based and broader remote sensing platforms for integrating hyperspectral (HSI) and multispectral (MSI) imagery. The HSST network improves upon conventional multi-head self-attention transformers by integrating cross attention, effectively [...] Read more.
This paper presents the Hierarchical Spectral–Spatial Transformer (HSST) network, a novel approach applicable to both drone-based and broader remote sensing platforms for integrating hyperspectral (HSI) and multispectral (MSI) imagery. The HSST network improves upon conventional multi-head self-attention transformers by integrating cross attention, effectively capturing spectral and spatial features across different modalities and scales. The network’s hierarchical design facilitates the extraction of multi-scale information and employs a progressive fusion strategy to incrementally refine spatial details through upsampling. Evaluations on three prominent hyperspectral datasets confirm the HSST’s superior efficacy over existing methods. The findings underscore the HSST’s utility for applications, including drone operations, where the high-fidelity fusion of HSI and MSI data is crucial. Full article
(This article belongs to the Special Issue Remote Sensing Image Thorough Analysis by Advanced Machine Learning)
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<p>Framework of the proposed network.</p>
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<p>The schematic diagram of a multi-head Spectral–Spatial Transformer feature fusion block.</p>
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<p>The fusion outcomes of various models on the Pavia Center dataset. The first row shows the R-G-B images after fusion, and the second row shows the pseudo-color processed differential images between the fused and reference images. (<b>a</b>) Original image; (<b>b</b>) CNMF; (<b>c</b>) MSD_CNN; (<b>d</b>) TFNET; (<b>e</b>) SSF-CNN; (<b>f</b>) MCT-NET; (<b>g</b>) HSST.</p>
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<p>The fusion outcomes of various models on the Botswana dataset. The first row shows the R-G-B images after fusion, and the second row shows the pseudo-color processed differential images between the fused and reference images. (<b>a</b>) Original image; (<b>b</b>) CNMF; (<b>c</b>) MSD_CNN; (<b>d</b>) TFNET; (<b>e</b>) SSF-CNN; (<b>f</b>) MCT-NET; (<b>g</b>) HSST.</p>
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<p>The fusion outcomes of various models on the Urban dataset. The first row shows the R-G-B images after fusion, and the second row shows the pseudo-color processed differential images between the fused and reference images. (<b>a</b>) Original image; (<b>b</b>) CNMF; (<b>c</b>) MSD_CNN; (<b>d</b>) TFNET; (<b>e</b>) SSF-CNN; (<b>f</b>) MCT-NET; (<b>g</b>) HSST.</p>
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<p>The fusion outcomes of ablation studies on the Urban dataset. The first row shows the R–G–B images after fusion, and the second row shows the pseudo-color processed differential images between the fused and reference images. (<b>a</b>) Original image; (<b>b</b>) Spectral Transformer only; (<b>c</b>) Spatial Transformer only; (<b>d</b>) Without progressive fusion; (<b>e</b>) HSST.</p>
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<p>The results for the Pavia Center classification experiment: (<b>a</b>) Original image; (<b>b</b>) Ground truth; (<b>c</b>) LR-HSI; (<b>d</b>) CNMF; (<b>e</b>) MSD-CNN; (<b>f</b>)TFNET; (<b>g</b>) SSF-CNN; (<b>h</b>) MCT-NET; (<b>i</b>) HSST.</p>
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26 pages, 3370 KiB  
Article
Application of Machine Learning for Predictive Analysis and Management of Mediterranean-Farmed Fish Mortalities: A Risk Management Case Study Using Apache Spark
by Marios C. Gkikas, Dimitris C. Gkikas, Gerasimos Vonitsanos, John A. Theodorou and Spyros Sioutas
Appl. Sci. 2024, 14(22), 10112; https://doi.org/10.3390/app142210112 - 5 Nov 2024
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Abstract
The current study evaluates the performance of three machine learning models—Decision Trees, Random Forest, and Linear Regression—applied to aquaculture data to mitigate risks in aquaculture management. The performances of these models are analyzed and properly demonstrated using metrics including the Mean Squared Error [...] Read more.
The current study evaluates the performance of three machine learning models—Decision Trees, Random Forest, and Linear Regression—applied to aquaculture data to mitigate risks in aquaculture management. The performances of these models are analyzed and properly demonstrated using metrics including the Mean Squared Error (MSE), R-squared (R2), Root Mean Squared Error (RMSE), and Concordance Index (C-index). The Random Forest model achieved the highest prediction accuracy among all machine learning models, followed by Linear Regression and the Decision Trees. The scatter plot for Linear Regression demonstrates good predictive accuracy for mid-range values. However, it shows significant deviations at the extremes, indicating that the model struggles to capture the full range of variability in the data. The bar chart of coefficients pinpoints the variables with the greatest impact on the predictions, providing suggestions for potential areas that can be improved and providing model interpretability. Future work could incorporate more predictive statistics models focusing on improving the models for extreme values by assessing non-linear models, feature engineering methods, and expanding research into less influential variables. The results greatly impact several sections, including aquaculture management, policy-making, and operational strategies, providing valuable insights for stakeholders and decision-makers. Apache Spark was used for data processing and machine learning model implementation; Apache Cassandra was also used for data storage, ensuring efficient large dataset management and SQL tools for structured data handling; Oracle VM VirtualBox for cross-platform virtualization; and Spark Connector was also used. Full article
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<p>Process overview.</p>
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<p>DTs predictions versus true values.</p>
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<p>DTs predicted factors affecting fish mortality.</p>
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<p>Random Forest predictions versus true values.</p>
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<p>Random Forest-predicted factors affecting fish mortality.</p>
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<p><span class="html-italic">Linear Regression</span>-predicted factors affecting fish mortality.</p>
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<p>Factors of coefficient scale fish mortality.</p>
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<p>Linear regression predictions versus true values for BS fish.</p>
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