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19 pages, 2447 KiB  
Article
Genome-Wide Identification, Classification, Expression Analysis, and Screening of Drought and Heat Resistance-Related Candidates of the Rboh Gene Family in Wheat
by Miyuan Cao, Yue Zhang, Xiaoxiao Zou, Huangping Yin, Yan Yin, Zeqi Li, Wenjun Xiao, Shucan Liu, Yongliang Li and Xinhong Guo
Plants 2024, 13(23), 3377; https://doi.org/10.3390/plants13233377 (registering DOI) - 30 Nov 2024
Viewed by 258
Abstract
Plant respiratory burst oxidase homologs (Rbohs) are key enzymes that produce reactive oxygen species (ROS), which serve as signaling molecules regulating plant growth and stress responses. In this study, 39 TaRboh genes (TaRboh01TaRboh39) were identified. These genes were distributed [...] Read more.
Plant respiratory burst oxidase homologs (Rbohs) are key enzymes that produce reactive oxygen species (ROS), which serve as signaling molecules regulating plant growth and stress responses. In this study, 39 TaRboh genes (TaRboh01TaRboh39) were identified. These genes were distributed unevenly among the wheat genome’s fourteen chromosomes, with the exception of homoeologous group 2 and 7 and chromosomes 4A, as well as one unidentified linkage group (Un). TaRbohs were classified into ten distinct clades, each sharing similar motif compositions and gene structures. The promoter regions of TaRbohs contained cis-elements related to hormones, growth and development, and stresses. Furthermore, five TaRboh genes (TaRboh26, TaRboh27, TaRboh31, TaRboh32, and TaRboh34) exhibited strong evolutionary conservation. Additionally, a Ka/Ks analysis confirmed that purifying selection was the predominant force driving the evolution of these genes. Expression profiling and qPCR results further indicated differential expression patterns of TaRboh genes between heat and drought stresses. TaRboh11, TaRboh20, TaRboh22, TaRboh24, TaRboh29, and TaRboh34 were significantly upregulated under multiple stress conditions, whereas TaRboh30 was only elevated in response to drought stress. Collectively, our findings provide a systematic analysis of the wheat Rboh gene family and establish a theoretical framework for our future research on the role of Rboh genes in response to heat and drought stress. Full article
21 pages, 6518 KiB  
Article
An In Silico Investigation of the Pathogenic G151R G Protein-Gated Inwardly Rectifying K+ Channel 4 Variant to Identify Small Molecule Modulators
by Eleni Pitsillou, Julia J. Liang, Noa Kino, Jessica L. Lockwood, Andrew Hung, Assam El-Osta, Asmaa S. AbuMaziad and Tom C. Karagiannis
Biology 2024, 13(12), 992; https://doi.org/10.3390/biology13120992 (registering DOI) - 29 Nov 2024
Viewed by 213
Abstract
Primary aldosteronism is characterised by the excessive production of aldosterone, which is a key regulator of salt metabolism, and is the most common cause of secondary hypertension. Studies have investigated the association between primary aldosteronism and genetic alterations, with pathogenic mutations being identified. [...] Read more.
Primary aldosteronism is characterised by the excessive production of aldosterone, which is a key regulator of salt metabolism, and is the most common cause of secondary hypertension. Studies have investigated the association between primary aldosteronism and genetic alterations, with pathogenic mutations being identified. This includes a glycine-to-arginine substitution at position 151 (G151R) of the G protein-activated inward rectifier potassium (K+) channel 4 (GIRK4), which is encoded by the KCNJ5 gene. Mutations in GIRK4 have been found to reduce the selectivity for K+ ions, resulting in membrane depolarisation, the activation of voltage-gated Ca2+ channels, and an increase in aldosterone secretion. As a result, there is an interest in identifying and exploring the mechanisms of action of small molecule modulators of wildtype (WT) and mutant channels. In order to investigate the potential modulation of homotetrameric GIRK4WT and GIRK4G151R channels, homology models were generated. Molecular dynamics (MD) simulations were performed, followed by a cluster analysis to extract starting structures for molecular docking. The central cavity has been previously identified as a binding site for small molecules, including natural compounds. The OliveNetTM database, which consists of over 600 compounds from Olea europaea, was subsequently screened against the central cavity. The binding affinities and interactions of the docked ligands against the GIRK4WT and GIRK4G151R channels were then examined. Based on the results, luteolin-7-O-rutinoside, pheophorbide a, and corosolic acid were identified as potential lead compounds. The modulatory activity of olive-derived compounds against the WT and mutated forms of the GIRK4 channel can be evaluated further in vitro. Full article
(This article belongs to the Special Issue 2nd Edition of Computational Methods in Biology)
21 pages, 4705 KiB  
Article
Thermal Reaction Process and Thermokinetic Characteristics of Coking Coal Oxidation
by Ruoyu Bao, Changkui Lei, Chengbo Wang and Fubao Zhou
Fire 2024, 7(12), 448; https://doi.org/10.3390/fire7120448 - 29 Nov 2024
Viewed by 359
Abstract
The coal–oxygen composite reaction is a complex physicochemical reaction process, and different heating rates have a great influence on this reaction. In order to reveal the influence of different heating rates on the coal–oxygen composite reaction of coking coal, the TG-DSC experimental method [...] Read more.
The coal–oxygen composite reaction is a complex physicochemical reaction process, and different heating rates have a great influence on this reaction. In order to reveal the influence of different heating rates on the coal–oxygen composite reaction of coking coal, the TG-DSC experimental method was adopted to analyze the hysteresis effect of the characteristic temperature, inflection point temperature, and peak temperature under different heating rates. Furthermore, the KAS method was employed to calculate the apparent activation energy, and the Málek method was utilized to infer the most probable mechanism functions and determine the compensation effects at different stages of the coal oxidation process. The results show that with an increase in heating rate, the temperature values corresponding to each characteristic temperature point increase, the characteristic temperature exhibits a hysteresis phenomenon, and the heat flow rate and heat flux rate also show an increasing trend. The apparent activation energy gradually increases in Stages II and III, with a maximum value of 198.7 kJ/mol near the ignition point T3, which first increases and then gradually decreases in Stage IV, where the maximum value is around the temperature point T4 of the maximum mass loss rate, which is 170.02 kJ/mol. The variation trend in the pre-exponential factor is consistent with the apparent activation energy, and the dynamic compensation effect is greater in Stage IV. The three different oxidation stages have different mechanism functions: a three-dimensional diffusion mode is present in Stages II and III, which is ultimately transformed into an accelerated form α-t curve with E1 and n = 1 in Stage IV. Full article
(This article belongs to the Special Issue Simulation, Experiment and Modeling of Coal Fires)
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<p>Characteristic temperature points and stage division.</p>
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<p>TG-DTG curves at different heating rates.</p>
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<p>DSC curves at different heating rates.</p>
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<p>Characteristic temperature variation of DSC curve at different heating rates.</p>
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<p>Relationship curves in Stage II: (<b>a</b>) conversion rate and temperature; (<b>b</b>) linear correlation between <math display="inline"><semantics> <mrow> <mi>ln</mi> <mo stretchy="false">(</mo> <mstyle scriptlevel="0" displaystyle="true"> <mfrac> <mi>β</mi> <mrow> <msup> <mi>T</mi> <mn>2</mn> </msup> </mrow> </mfrac> </mstyle> <mo stretchy="false">)</mo> </mrow> </semantics></math> and 1/T.</p>
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<p>Relationship curves in Stage III: (<b>a</b>) conversion rate and temperature; (<b>b</b>) linear correlation curve <math display="inline"><semantics> <mrow> <mi>ln</mi> <mo stretchy="false">(</mo> <mstyle scriptlevel="0" displaystyle="true"> <mfrac> <mi>β</mi> <mrow> <msup> <mi>T</mi> <mn>2</mn> </msup> </mrow> </mfrac> </mstyle> <mo stretchy="false">)</mo> </mrow> </semantics></math> with 1/T.</p>
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<p>Relationship curves in Stage IV: (<b>a</b>) conversion rate and temperature; (<b>b</b>) linear correlation curve <math display="inline"><semantics> <mrow> <mi>ln</mi> <mo stretchy="false">(</mo> <mstyle scriptlevel="0" displaystyle="true"> <mfrac> <mi>β</mi> <mrow> <msup> <mi>T</mi> <mn>2</mn> </msup> </mrow> </mfrac> </mstyle> <mo stretchy="false">)</mo> </mrow> </semantics></math> with 1/T.</p>
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<p>Relationship between apparent activation energy and conversion rate at Stages II, III and IV.</p>
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<p>Relationship between apparent activation energy and temperature at Stages II, III and IV.</p>
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<p>Málek theoretical values of different mechanism functions.</p>
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<p>Málek method for determining mechanism functions at different stages.</p>
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<p>Málek method for determining mechanism functions at different stages.</p>
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<p>Linear relationship of ln <span class="html-italic">A</span> − <span class="html-italic">E<sub>a</sub></span> compensation effect.</p>
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13 pages, 2277 KiB  
Perspective
Transitional Care for Spinal Cord Injuries in Hong Kong SAR, China: A Narrative Review of the Local Experience
by Chor-Yin Lam, Ivan Yuen-Wang Su and Joyce Yuk-Mui Law
Healthcare 2024, 12(23), 2388; https://doi.org/10.3390/healthcare12232388 - 28 Nov 2024
Viewed by 280
Abstract
Background: Spinal cord injuries (SCI) are devastating conditions which often cause multiple permanent physical impairments and psychosocial complications. Discharge from hospital is often delayed and precious health resources are consumed. In Hong Kong SAR, China, the government welfare system and the public hospital [...] Read more.
Background: Spinal cord injuries (SCI) are devastating conditions which often cause multiple permanent physical impairments and psychosocial complications. Discharge from hospital is often delayed and precious health resources are consumed. In Hong Kong SAR, China, the government welfare system and the public hospital system have worked together to address these problems through partnership with non-governmental organizations. An SCI transitional care facility (the Jockey Club New Page Inn, JCNPI) run by a non-governmental organization (SAHK), was inaugurated in 2008. Objectives: Review the local experience of the implementation of SCI transitional care in Hong Kong SAR, China. Methods: A narrative review of the service model, facilitators and barriers, and future development. Service output and outcomes were evaluated with quantitative and qualitative means. Results: The SCI transitional care in Hong Kong provides person-centred transitional care and support, including a time-limited residential rehabilitation, a post-discharge community day rehabilitation programme, and a residential respite care. The current intervention strategy is based on the WHO’s International Classification of Functioning, Disability, and Health (ICF). In the past 16 years, a total of 226 clients were discharged from the residential rehabilitation service. A total of 223 (98.6%) clients have successfully returned to community living. Positive feedback was received from the service users. Conclusions: The SCI transitional care has transformed care for SCI patients from the previous biomedical-oriented, hospital-based rehabilitation into a journey with an empowering and participatory approach addressing their biopsychosocial needs. The model has proven to be a key player in the continuum of care and sustainable community reintegration of individuals with SCI. Full article
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Figure 1
<p>The Jockey Club New Page Inn (JCNPI) and the community facilities in the surroundings. Left upper: typical setup of a bedroom for transitional residential service; Right upper: a supermarket in the neighbourhood; Left lower: the nearby Mass Transit Railway station; Right lower: clients enjoying boccia under guidance by the staff at the basketball in front of JCNPI.</p>
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<p>The JCNPI has two modified minibuses equipped with wheelchair lifts. The Chinese characters at the top of the vehicle means “wheelchair lift in operation”.</p>
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<p>The pre-discharge suite for short period trial stays by the client and caregiver.</p>
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<p>JCNPI serves as a hub connecting the public hospitals with community support, family and caregiver support, and peer networking services for survivors with SCI.</p>
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<p>The five-component biopsychosocial model of functioning, disability and health. (Adapted from International classification of functioning, disability and health: ICF. Geneva: World Health Organization. 2001. CC BY-NC-SA 3.0 IGO [<a href="#B6-healthcare-12-02388" class="html-bibr">6</a>]).</p>
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<p>Results of application for transitional residential care.</p>
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<p>Distribution of length of stay (in years) of the residents of JCNPI in the past 16 years.</p>
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<p>Discharge destinations of transitional residential rehabilitation clients.</p>
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14 pages, 3878 KiB  
Article
Fully Metallic Additively Manufactured Monopulse Horn Array Antenna in Ka-Band
by José Rico-Fernández, Álvaro F. Vaquero, Marcos R. Pino and Manuel Arrebola
Appl. Sci. 2024, 14(23), 11065; https://doi.org/10.3390/app142311065 - 28 Nov 2024
Viewed by 268
Abstract
The Laser Powder-Bed Fusion Additive Manufacturing (LPBF AM) technique is evaluated for the manufacturing of fully metallic monolithic microwave components. To validate the manufacturing technique, a difference pattern array of 4 × 4 horn antennas is designed to operate at mm-Wave frequencies. The [...] Read more.
The Laser Powder-Bed Fusion Additive Manufacturing (LPBF AM) technique is evaluated for the manufacturing of fully metallic monolithic microwave components. To validate the manufacturing technique, a difference pattern array of 4 × 4 horn antennas is designed to operate at mm-Wave frequencies. The antenna is based on H-plane power dividers and a complex structure to obtain a difference radiation pattern by rotating twisted sections in two different orientations. The prototype is manufactured with a monolithic piece of aluminum alloy AlSi10Mg, providing a lightweight single structure that includes both radiating elements and a feeding network consisting of twisters and power dividers in a waveguide. The prototype was experimentally evaluated in an anechoic chamber and the near-field planar acquisition range, obtaining good agreement with full-wave simulations within an operational bandwidth from 34 to 36 GHz. The results demonstrate that the LPBF AM technique is a suitable candidate to produce challenging monolithic metal-only microwave components in the Ka-band, such as monopulse antennas. Full article
(This article belongs to the Special Issue Antenna System: From Methods to Applications)
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Figure 1
<p>A flowchart of the difference pattern horn array antenna design process.</p>
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<p>The difference pattern horn array antenna: (<b>a</b>) an exploded view of the vacuum design and (<b>b</b>) a rendering of the mechanical design.</p>
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<p>Photographs of the additively manufactured difference pattern horn array antenna in AlSi10Mg.</p>
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<p>Scattering parameters of difference pattern horn array prototype, comparing measured (<span class="html-italic">solid lines</span>) with simulated (<span class="html-italic">dashed lines</span>) results with <math display="inline"><semantics> <mrow> <mo>±</mo> <mn>1</mn> <mo>%</mo> </mrow> </semantics></math> deviation in shadow.</p>
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<p>The measurement setup for the additively manufactured horn array prototype in (<b>a</b>) the spherical range in an anechoic chamber and (<b>b</b>) the planar acquisition range.</p>
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<p>Normalized radiation pattern of difference pattern horn array prototype at 36 GHz, comparing measured (<span class="html-italic">dashed and dotted lines</span>) with simulated (<span class="html-italic">solid lines</span>) results.</p>
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<p>Normalized radiation patterns of the difference pattern horn array in the UV plane for measurements at (<b>a</b>) 34 GHz, (<b>c</b>) 35 GHz, and (<b>e</b>) 36 GHz and simulations at (<b>b</b>) 34 GHz (<b>d</b>) 35 GHz, and (<b>f</b>) 36 GHz.</p>
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<p>Normalized radiation patterns of the difference pattern horn array in the UV plane for measurements at (<b>a</b>) 34 GHz, (<b>c</b>) 35 GHz, and (<b>e</b>) 36 GHz and simulations at (<b>b</b>) 34 GHz (<b>d</b>) 35 GHz, and (<b>f</b>) 36 GHz.</p>
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<p>Magnified normalized radiation pattern (cut <math display="inline"><semantics> <mrow> <mi>ϕ</mi> </mrow> </semantics></math> = 90°) of difference pattern horn array prototype for different frequencies.</p>
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<p>Near-field measurements at 57 mm of difference pattern horn array prototype: (<b>a</b>) amplitude and (<b>b</b>) phase at 34 GHz, (<b>c</b>) amplitude and (<b>d</b>) phase at 35 GHz, and (<b>e</b>) amplitude and (<b>f</b>) phase at 36 GHz.</p>
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14 pages, 313 KiB  
Article
Appraising the Factors Associated with Delirium Care Behaviours and Barriers to Their Assessment Among Clinical Nurses: A Cross-Sectional Study
by Susan Ka Yee Chow and Soi Chu Chan
Int. J. Environ. Res. Public Health 2024, 21(12), 1582; https://doi.org/10.3390/ijerph21121582 - 27 Nov 2024
Viewed by 324
Abstract
Delirium can occur at any age, although the incidence is higher in older patients and after surgery. Although delirium is an acute, potentially reversible, cognitive disorder, there is evidence that it is associated with increased healthcare costs and imposes a significant burden on [...] Read more.
Delirium can occur at any age, although the incidence is higher in older patients and after surgery. Although delirium is an acute, potentially reversible, cognitive disorder, there is evidence that it is associated with increased healthcare costs and imposes a significant burden on patients, families, hospitals, and public resources. The aim of this study was to investigate and assess the knowledge, behaviours, and factors influencing assessments of delirium by hospital nurses so as to predict the factors associated with their current delirium management behaviours. A cross-sectional survey was conducted among 342 nurses in different hospitals in Macau. The questionnaires included items on the respondents’ demographic information, knowledge of delirium care, nursing behaviours, and factors influencing nurses’ assessment of delirium patients in their daily practice. The descriptive statistics showed that nurses were found to have a moderate level of knowledge about the management of delirium. The repeated measures ANOVA revealed that patient factors were the most significant, outweighing individual and organizational factors as barriers to assessing patients with delirium. The Pearson’s correlation showed a moderate positive correlation between delirium care knowledge and delirium care behaviour (r = 0.339). With regard to factors influencing delirium care behaviours, multiple linear regression models showed that the significant predictors were years of work experience (β = 0.206, 95% CI: 1.125–3.158), the duration of delirium care courses (β = 0.103, 95% CI: 0.118–3.339), the knowledge of delirium care (β = 0.264, 95% CI: 0.474–1.019), and personal factors influencing nurses’ delirium assessments (β = −0.239, 95% CI: −1.031–−0.432). To enhance delirium management and achieve the optimal care of patients with delirium, formal education and training are crucial. Organizations should develop structured protocols and workflows that empower nurses. By integrating organizational strategies with individual efforts, clinical practices can be improved, resulting in optimal delirium care for patients. Full article
(This article belongs to the Special Issue Advances in Nursing and Medical Education)
16 pages, 1626 KiB  
Review
Comparison of Orthogonal Determination Methods of Acid/Base Constants with Meta-Analysis
by Tamás Pálla, Károly Mazák, Dania Mohammed Alkhazragee, György Tibor Balogh, Béla Noszál and Arash Mirzahosseini
Int. J. Mol. Sci. 2024, 25(23), 12727; https://doi.org/10.3390/ijms252312727 - 27 Nov 2024
Viewed by 237
Abstract
The accurate determination of acid/base constants (proton dissociation constants—pKa, or equivalently protonation constants—logK) is essential for the physicochemical characterization of new molecules, especially in drug design and development, as these parameters thoroughly influence the pharmacokinetics and pharmacodynamics of [...] Read more.
The accurate determination of acid/base constants (proton dissociation constants—pKa, or equivalently protonation constants—logK) is essential for the physicochemical characterization of new molecules, especially in drug design and development, as these parameters thoroughly influence the pharmacokinetics and pharmacodynamics of drug action. While pH/potentiometric titration remains the gold standard method for determining acid/base constants, spectroscopic techniques—particularly nuclear magnetic resonance spectroscopy (as NMR/pH titrations)—have emerged as powerful alternatives for specific challenges in analytical chemistry, providing also information on the structure and site of protonation. In this study, we performed a comprehensive meta-analysis of protonation constants reported in the literature, measured using both potentiometry and NMR titrations. Our analysis compiled the available literature data and assessed the agreement between the two methods, taking into consideration various experimental conditions, such as temperature and ionic strength. The results provide insights into the reliability and applicability of NMR titrations compared with potentiometry, offering guidance for selecting appropriate methodologies in drug design. Full article
(This article belongs to the Special Issue Drug Discovery: Design, Synthesis and Activity Evaluation)
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Figure 1
<p>Pairs plot of selected variables. Note that methods ‘1’ and ‘2’ are used to denote ‘NMR’ and ‘Pot,’ respectively.</p>
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<p><b>Left</b>: the smoothed frequency histogram of p<span class="html-italic">K</span><sub>a</sub> values depicted for the acid/base/amphoteric moieties, with a multimodal empirical distribution. <b>Right</b>: the density histogram of the standard error of p<span class="html-italic">K</span><sub>a</sub> values is an exponential empirical distribution; the exponential theoretical distribution calculated from the mean (red line) and standard deviation (green line) of the error values, respectively, are also shown.</p>
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<p>The Bland–Altman plot of p<span class="html-italic">K</span><sub>a</sub> values determined with the two methods: potentiometry and NMR; on the y-axis, the difference: NMR-determined values minus potentiometry-determined values. The outlier p<span class="html-italic">K</span><sub>a</sub> values are identified with text labels (compound and protonation step). The 95% limits of agreement are at dashed lines, while the 95% confidence interval of the bias is depicted with shaded areas. Bounds of scientifically important differences are shown with solid blue lines.</p>
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<p>The Bland–Altman plot of p<span class="html-italic">K</span><sub>a</sub> values with outliers removed. On the top, values from overlapping protonation are shown with red circles; two successive protonation steps were considered overlapping if their difference was below 2 p<span class="html-italic">K</span><sub>a</sub> units. The bias and 95% limits of agreement of the entire dataset are shown in red for reference, together with the bounds of scientifically important differences with solid blue lines. On the bottom left, values from the acidic/basic/amphoteric moieties are shown in color together with their bias and 95% limits of agreement. On the bottom right, values of the two pH measurement techniques during NMR titrations are shown in color together with their bias and 95% limits of agreement. The bias and 95% limits of agreement of the entire dataset are shown in red for reference.</p>
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<p>Left: the density histogram of p<span class="html-italic">K</span><sub>a</sub> difference values from the trimmed data of <a href="#ijms-25-12727-f004" class="html-fig">Figure 4</a>, together with the theoretical normal distribution of the same mean and variance in red. Right: the Q-Q plot of p<span class="html-italic">K</span><sub>a</sub> difference values from the trimmed data.</p>
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<p>Diagnostic figure of the original mixed-effects model (<b>left</b>) and the extended mixed-effects model (<b>right</b>).</p>
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<p>On the left: the atom frequency in the compounds of the dataset. On the right: the multi-dimensional scaling plot of the compounds after clustering using the Tanimoto distances.</p>
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<p>On the <b>left</b>, three representative NMR titration curves with simulated low, medium, and high pK<sub>a</sub> values; the simulated value is depicted as the ’real’ value, and after modeling the measurement uncertainties inherent to both methods, the fitted values and their difference are also depicted. On the <b>right</b>, a simulation of 300 pK<sub>a</sub> values from a uniform distribution afforded a Bland–Altman plot, in which the bias trend vs. pK<sub>a</sub> can be observed.</p>
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8 pages, 910 KiB  
Article
Excitation-Dependent pKa Extends the Sensing Range of Fluorescence Lifetime pH Sensors
by Emily P. Haynes, Mary Canzano and Mathew Tantama
Sensors 2024, 24(23), 7531; https://doi.org/10.3390/s24237531 - 26 Nov 2024
Viewed by 270
Abstract
Biological activity is strongly dependent on pH, which fluctuates within a variety of neutral, alkaline, and acidic local environments. The heterogeneity of tissue and subcellular pH has driven the development of sensors with different pKa values, and a huge assortment of fluorescent sensors [...] Read more.
Biological activity is strongly dependent on pH, which fluctuates within a variety of neutral, alkaline, and acidic local environments. The heterogeneity of tissue and subcellular pH has driven the development of sensors with different pKa values, and a huge assortment of fluorescent sensors have been created to measure and visualize pH in living cells and tissues. In particular, sensors that report based on fluorescence lifetime are advantageous for quantitation. Here, we apply a theoretical framework to derive how the apparent pKa of lifetime-based pH sensors depends on fluorescence excitation wavelength. We demonstrate that theory predicts the behavior of two different fluorescent protein-based pH sensors in solution as proofs-of-concept. Furthermore, we show that this behavior has great practical value in living cells because it extends the sensing range of a single sensor by simply choosing appropriate detection parameters to match the physiological pH range of interest. More broadly, our results show that the versatility of a single lifetime-based sensor has been significantly underappreciated, and our approach provides a means to use a single sensor across a range of pH environments. Full article
(This article belongs to the Section Biosensors)
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Figure 1
<p>Excitation wavelength-dependent pKa of the intensiometric fluorescent pH sensor mCherryTYG. (<b>A</b>) Lifetime-pH titrations of purified mCherryTYG protein in solution. Fitted lines: 483 nm (purple), 503 nm (blue), 523 nm (green), 543 nm (yellow), 563 nm (orange), 583 nm (red). (<b>B</b>) Agreement between the theoretical prediction for mCherryTYG using Equation (7) (red line) and experimental observations (circles) for <span class="html-italic">pK<sub>a</sub><sup>app</sup></span> versus excitation wavelength. Error bars are standard errors from fitting.</p>
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<p>Excitation wavelength-dependent pKa of the ratiometric fluorescent pH sensor pHRed. (<b>A</b>) Lifetime-pH titrations of purified pHRed protein. Fitted lines: 400 nm (purple), 420 nm (navy), 440 nm (blue), 460 nm (teal), 490 nm (green), 520 nm (light green), 540 nm (yellow), 560 nm (orange), 580 nm (red). (<b>B</b>) Agreement between the theoretical prediction for pHRed using Equation (7) (red line) and experimental observations (circles) for <span class="html-italic">pK<sub>a</sub><sup>app</sup></span> versus excitation wavelength. Error bars are standard errors from fitting.</p>
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<p>Improved sensitivity of live-cell pH measurements by selection of excitation wavelength. Live <span class="html-italic">E. coli</span> expressing pHRed were suspended in media buffered at pH 6.0, lacking any carbon fuel source. After the 4 min time point, glucose was added to fuel cellular respiration, and after the 9 min time point, potassium cyanide was added to block respiration (<span class="html-italic">n</span> = 7 from three independent cultures, error bars for 95% confidence interval). Lifetime measurements were made with 440 nm (blue) and 575 nm (orange) excitation.</p>
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17 pages, 1327 KiB  
Article
The Role of Medium Polarity in the Efficiency of Albumin Binding with Hydrophobic Ligands: Experimental Studies and a Molecular Dynamics Investigation
by Gabriel Zazeri, Ana Paula Ribeiro Povinelli, Luiza de Carvalho Bertozo, Alan M. Jones and Valdecir Farias Ximenes
Int. J. Mol. Sci. 2024, 25(23), 12664; https://doi.org/10.3390/ijms252312664 - 25 Nov 2024
Viewed by 304
Abstract
This study evaluates how the polarity of the medium affects the binding efficiency of hydrophobic ligands with human serum albumin (HSA). The polarity of the aqueous medium was changed by adding 1,4-dioxane in concentrations of 0%, 10%, and 20% w/w, [...] Read more.
This study evaluates how the polarity of the medium affects the binding efficiency of hydrophobic ligands with human serum albumin (HSA). The polarity of the aqueous medium was changed by adding 1,4-dioxane in concentrations of 0%, 10%, and 20% w/w, resulting in solvent mixtures with decreasing dielectric constants (ε = 80, 72, and 63). The addition of 1,4-dioxane did not affect the integrity of the protein, as confirmed by Far-UV-CD, Rayleigh scattering, and time-resolved fluorescence experiments. The impact of medium polarity on the binding constants was evaluated using 1,6-diphenyl-1,3,5-hexatriene (DPH), octyl gallate (OG), quercetin, and rutin as ligands. The association constants of DPH decreased as the medium hydrophobicity increased: at 0%, Ka = 19.8 × 105 M−1; at 10%, Ka = 5.3 × 105 M−1; and at 20%, Ka = 1.7 × 105 M−1. The decrease was still higher using OG: at 0%, Ka = 5.2 × 106 M−1; and at 20%, Ka = 2.2 × 105 M−1. The results in the same direction were obtained using quercetin and rutin as ligands. Molecular dynamics simulations illustrated the hydrophobic effect at the molecular level. The energy barrier for DPH to detach from the protein’s hydrophobic site and to move into the bulk solution was higher at 0% (9 kcal/mol) than at 20% 1,4-dioxane (7 kcal/mol). The difference was higher for OG, with 14 and 6 kcal/mol, respectively. Based on these findings, it was shown that the difference in hydrophobicity between the protein’s microenvironment and the surrounding solvent is an essential component for the effectiveness of the interaction. These results shed light on albumin–ligand complexation, a molecular interaction that has been extensively studied. Full article
(This article belongs to the Section Molecular Biophysics)
21 pages, 3757 KiB  
Article
Using Virtual Reality Recreation Therapy to Enhance Social Interaction and Well-Being in Homebound Seniors
by Jonathan J. Foo, Keng Hao Chew, Peggy Lim, June Tay and Carol Hok Ka Ma
J. Ageing Longev. 2024, 4(4), 373-393; https://doi.org/10.3390/jal4040027 - 25 Nov 2024
Viewed by 482
Abstract
In view of Singapore’s rapidly ageing population, this study is an exploratory pilot designed to assess the feasibility and potential impact of virtual reality recreation therapy (VRRT) on homebound seniors. A tri-party research partnership was formed between the Singapore University of Social Sciences [...] Read more.
In view of Singapore’s rapidly ageing population, this study is an exploratory pilot designed to assess the feasibility and potential impact of virtual reality recreation therapy (VRRT) on homebound seniors. A tri-party research partnership was formed between the Singapore University of Social Sciences (SUSS), NTUC Health Home Care, and Vue Reality Labs. The aim was to explore the benefits of VR recreation therapy for homebound seniors, contributing to the goal of ‘aging in place’. Over two years, a 52-week VR curriculum was developed, featuring social, travel, and cultural topics tailored to the seniors. Five care associates from NTUC Health Home Care received facilitator training by Vue Reality Labs. A total of 71 homebound senior participants aged 50 to 102 engaged in over 1600 session hours during the 52-week trial; 62% had varying levels of dementia. A mixed-methods approach was adopted to explore the general impact and feasibility of VR recreation therapy, incorporating quantitative data on participants’ emotional, social, and cognitive conditions and qualitative data from facilitator interviews. The findings revealed that most senior participants enjoyed the VR sessions, perceiving them to positively impact their overall health and well-being. Caregivers reported improvements in cognitive, social, and emotional functioning of the participants. The positive effects extended to caregivers and facilitators, with renewed relationships and enhanced skills, respectively. The insights and observations gathered from this pilot study will serve as a foundation for designing a more robust study for deploying the VR recreation therapy programme in senior care. Full article
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<p>Tripartite research partnership.</p>
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<p>Sample VR recreation therapy content.</p>
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<p>Stakeholders relationship.</p>
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<p>Participant experiencing VR recreation therapy.</p>
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<p>Social—Interaction with family/VR facilitator.</p>
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<p>Emotions—cheerful.</p>
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<p>Behaviour—Calm/Agitated.</p>
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<p>Cognitive—Remembering - where client put their things.</p>
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<p>Cognitive—Is the client rational—logical?</p>
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<p>Cognitive—Is the client more receptive to new activities?</p>
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15 pages, 6301 KiB  
Article
Genome-Wide Identification of the Heat Shock Transcription Factor Gene Family in Rosemary (Salvia rosmarinus)
by Weitong Cui, Zongle Xu, Yuhua Kong, Lin Yang, Hao Dou, Dangquan Zhang, Mingwan Li, Yuanyuan Chen, Shen Ding, Chaochen Yang and Yong Lai
Horticulturae 2024, 10(12), 1250; https://doi.org/10.3390/horticulturae10121250 - 25 Nov 2024
Viewed by 411
Abstract
Rosemary (Salvia rosmarinus) is a world-famous plant frequently subjected to various environmental stresses. Heat Shock Transcription Factor (HSF) has been shown to be essential for plant growth and for resistance to environmental stresses. This study utilized bioinformatics techniques to identify the [...] Read more.
Rosemary (Salvia rosmarinus) is a world-famous plant frequently subjected to various environmental stresses. Heat Shock Transcription Factor (HSF) has been shown to be essential for plant growth and for resistance to environmental stresses. This study utilized bioinformatics techniques to identify the SrHSF gene family in the rosemary genome. A total of 49 SrHSFs were detected, unevenly distributed across 12 chromosomes. The SrHSF genes were classifiable into 3 subfamilies and contained in 14 subgroups. They were relatively conserved during the evolutionary process based on gene structure and conserved motif analysis. There were 22 kinds of cis-acting elements in the promoter regions of SrHSF genes, mostly related to hormones, stress, growth, and development. The interactions among 16 highly conserved SrHSF proteins were also identified. Gene collinearity analysis showed that 51 segmental duplication events were undergone among 41 SrHSF genes. Ka/Ks ratios were all less than 1, suggesting a purifying selection of SrHSF homologous genes. The expression pattern of SrHSF genes revealed that the majority of them are highly expressed in the secondary stems. After 0.1% MeJA treatment, SrHSF36 and SrHSF11 showed a significant upregulation in leaves. This research provides valuable insights into the functions and regulatory mechanisms of the SrHSF gene family. Full article
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<p>Chromosome arrangement of <span class="html-italic">SrHSF</span> genes in <span class="html-italic">S. rosmarinus</span>. The colors on the chromosomes represent gene density. The 49 <span class="html-italic">SrHSF</span> genes are mapped to 12 chromosomes.</p>
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<p>Phylogenetic tree of <span class="html-italic">HSFs</span> in <span class="html-italic">S. rosmarinus</span> and <span class="html-italic">A. thaliana</span>. The phylogenetic tree was constructed by using MEGA11 with the neighbor-joining method and 1000 bootstraps. The three color blocks represent the three subfamilies, with the blue stars representing the <span class="html-italic">SrHSF</span> genes and the yellow triangles representing the <span class="html-italic">AtHSF</span> genes.</p>
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<p>Gene structure (<b>A</b>) and protein conserved motifs (<b>B</b>) of <span class="html-italic">SrHSF</span> in <span class="html-italic">S. rosmarinus</span>. Exons and untranslated regions (UTRs) are represented by blue boxes and pink boxes, respectively, and the grey lines represent the introns. The ten color blocks on the lines represent different motifs.</p>
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<p>The distribution of <span class="html-italic">cis-</span>regulating elements in the promoter region of the <span class="html-italic">HSF</span> gene in <span class="html-italic">S. rosmarinus</span>. Each promoter is located at the 2000 bp upstream region of <span class="html-italic">SrHSF</span> gene. The colored blocks represent 22 kinds of cis-elements.</p>
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<p>Protein interaction of SrHSF in <span class="html-italic">S. rosmarinus</span>. Blue circle represents SrHSF proteins, and pink circle represents AtHSF proteins of <span class="html-italic">A. thaliana</span>. The line represents an interaction between the two proteins.</p>
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<p>Collinearity of <span class="html-italic">HSF</span> gene families in different species. (<b>A</b>) Collinearity of <span class="html-italic">HSF</span> gene family in <span class="html-italic">S. rosmarinus</span>; (<b>B</b>) collinearity of <span class="html-italic">HSF</span> gene family in <span class="html-italic">A. thaliana</span>, <span class="html-italic">S. rosmarinus</span>, and <span class="html-italic">S. miltiorrhiza</span>. Heatmaps and line plots depict the gene density within each chromosome. Gray curves in the background show all segmental duplications (SDs) within the rosemary genome, as well as among the rosemary, <span class="html-italic">A. thaliana</span>, and <span class="html-italic">S. miltiorrhiza</span> genomes. The blue curves highlight the SDs of <span class="html-italic">HSF</span>. Darker areas show more SDs with denser curves, and the lighter areas show fewer SDs with fewer curves.</p>
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<p>Heatmaps of <span class="html-italic">SrHSF</span> expression in different tissues and leaves under methyl jasmonate (MeJA) treatment. (<b>A</b>) The expression pattern of <span class="html-italic">SrHSF</span> genes in five different tissues. ER: entire root; SS: secondary stem; ML: mature leaf; YL: young leaf; MF: mature flower. Red represents high expression levels, while blue represents low expression levels. (<b>B</b>) The expression pattern of <span class="html-italic">SrHSF</span> genes in leaves treated with 0.1% MeJA treatment for 48 h and 72 h (the treatment groups, T); no MeJA treatment (0 h) as the control (CK).</p>
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18 pages, 12883 KiB  
Article
Characteristics of Mudflow Distribution and Evolution of Mudflow Fan in Erlian Village
by Xinning Wu, Huijun Yan, Sailajia Wei, Zhengfa Wei, Kai Wu, Zhaohua Zhou and Ming Wang
Water 2024, 16(23), 3382; https://doi.org/10.3390/w16233382 - 25 Nov 2024
Viewed by 434
Abstract
Debris flow in the upper Yellow River is very developed and is generally characterized by wide distribution with large numbers and a high frequency of occurrence. This paper analyses the distribution characteristics, material composition, and formation causes of the Erlian debris flow fan [...] Read more.
Debris flow in the upper Yellow River is very developed and is generally characterized by wide distribution with large numbers and a high frequency of occurrence. This paper analyses the distribution characteristics, material composition, and formation causes of the Erlian debris flow fan in the eastern part of the Guide Basin and discusses the relationship between debris flow fan and river evolution. Results show that: (1) At least 66 debris flow gullies and 20 large debris flow accumulation fans have been developed on both sides of the Yellow River in the eastern Guide Basin. (2) In the Erlian Village area, the Yellow River channel has experienced the accumulation, erosion, destruction, and accumulation process of debris flow fans in 16 kaB.P., 16 ka B.P.–8 ka B.P., and 8 kaB.P., respectively, the late-accumulation fan has been continuously extruding the Yellow River channel since 8 kaB.P., and the Yellow River channel has been shifted to the south by at least 1.25 km during the period of 8 ka. (3) Five accumulation periods for the Late Mudslide Fan were identified by classifying the 16 kaB.P. and 8 kaB.P. early and late mudslide fans. This study can provide theoretical and technical support for preventing debris flow disasters in the upper reaches of the Yellow River and has certain reference and reference values. Full article
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<p>Topography and geomorphology of the upper reaches of the Yellow River between basins and mountains.</p>
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<p>Erlian Village debris flow circulation area.</p>
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<p>The surface of the ancient flood fan in Erlian Village is covered with water-falling holes.</p>
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<p>Schematic plan of the field survey debris flow gully. (❶ Great Beam debris flow gully, ❷ Erlian village debris flow ditch, ❸ Ashgon West debris flow gully).</p>
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<p>Washout on a late debris flow fan.</p>
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<p>The surface of the ancient flood fan in Erlian Village is covered with water-falling holes.</p>
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<p>The regional location of the study area and the distribution map of debris flow gullies and accumulation fans.</p>
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<p>The early and late debris flow fan landforms on both sides of the Yellow River in the eastern Guide Basin.</p>
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<p>The geomorphological characteristics of the early debris flow accumulation fan in Erlian.</p>
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<p>The schematic diagram of the evolution process of the mudflow fan and the Yellow River channel. (<b>a</b>) The relationship between the early mudflow fan in the 16ka B.Pa period and the ancient river channel is speculated; (<b>b</b>) The relationship between the early mudflow fan in the 8ka B.Pa period and the ancient river channel is speculated; (<b>c</b>) The relationship between the late mud-flow fan and the modern Yellow River</p>
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<p>Early and late debris flow fan morphology and sample collection location in Erlian Village [<a href="#B22-water-16-03382" class="html-bibr">22</a>]. (<b>a</b>) Early and late debris flow fan morphology of Erlian Village. (<b>b</b>) Cross-section of the early and late debris flow fan (I-I’ section). (<b>c</b>) Two mudflow fan ZK1 drilling cores.</p>
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<p>Characteristics of the grain size fraction profile at the top of the Erlian mudflow accumulation fan.</p>
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<p>The development sequence of debris flow fans in the late Erlian period (based on Google Earth image).</p>
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<p>Geomorphological characteristics of debris flow accumulation fan in late Erlian period.</p>
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<p>Rainfall monitoring data of Erlian Village in the Guide Basin in the upper reaches of the Yellow River.</p>
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<p>Remote sensing image analysis of typical sections of the Yellow River course in the Guide Basin (the blue line represents the Yellow River course of Phase I, and the green line represents the Yellow River course of Phase II).</p>
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16 pages, 3339 KiB  
Article
Full-Length Transcriptomes Reconstruction Reveals Intraspecific Diversity in Hairy Vetch (Vicia villosa Roth) and Smooth Vetch (V. villosa Roth var. glabrescens)
by Weiyi Kong, Bohao Geng, Wenhui Yan, Jun Xia, Wenkai Xu, Na Zhao and Zhenfei Guo
Plants 2024, 13(23), 3291; https://doi.org/10.3390/plants13233291 (registering DOI) - 22 Nov 2024
Viewed by 398
Abstract
Hairy vetch (Vicia villosa Roth) and smooth vetch (V. villosa Roth var. glabrescens) are important cover crops and legume forage with great economic and ecological values. Due to the large and highly heterozygous genome, full-length transcriptome reconstruction is a cost-effective [...] Read more.
Hairy vetch (Vicia villosa Roth) and smooth vetch (V. villosa Roth var. glabrescens) are important cover crops and legume forage with great economic and ecological values. Due to the large and highly heterozygous genome, full-length transcriptome reconstruction is a cost-effective route to mining their genetic resources. In this study, a hybrid sequencing approach combining SMRT and NGS technologies was applied. The results showed that 28,747 and 40,600 high-quality non-redundant transcripts with an average length of 1808 bp and 1768 bp were generated from hairy vetch and smooth vetch, including 24,864 and 35,035 open reading frames (ORFs), respectively. More than 96% of transcripts were annotated to the public databases, and around 25% of isoforms underwent alternative splicing (AS) events. In addition, 987 and 1587 high-confidence lncRNAs were identified in two vetches. Interestingly, smooth vetch contains more specific transcripts and orthologous clusters than hairy vetch, revealing intraspecific transcript diversity. The phylogeny revealed that they were clustered together and closely related to the genus Pisum. Furthermore, the estimation of Ka/Ks ratios showed that purifying selection was the predominant force. A putative 3-dehydroquinate dehydratase/shikimate dehydrogenase (DHD/SDH) gene underwent strong positive selection and might regulate phenotypic differences between hairy vetch and smooth vetch. Overall, our study provides a vital characterization of two full-length transcriptomes in Vicia villosa, which will be valuable for their molecular research and breeding. Full article
(This article belongs to the Special Issue Genetic and Biological Diversity of Plants)
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<p>Phenotypic characteristics of hairy vetch and smooth vetch. (<b>A</b>) Plant phenotypes at heading stage in the field. Comparison of shoots apex (<b>B</b>), stems (<b>C</b>), florets (<b>D</b>), pods (<b>E</b>) and seeds (<b>F</b>) between the two vetches. Bars: 10 cm (<b>A</b>); 1 cm (<b>B</b>–<b>E</b>); 1 mm (<b>F</b>). Determination of plant height (<b>G</b>), branch number (<b>H</b>), fresh weight (<b>I</b>) and seed weight (<b>J</b>). Error bars, ±SD (<span class="html-italic">n</span> = 9). Student’s <span class="html-italic">t</span> test was used for statistical analysis (* <span class="html-italic">p</span> ≤ 0.05, ** <span class="html-italic">p</span> ≤ 0.01).</p>
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<p>The transcripts number and length distributions of hairy vetch and smooth vetch. (<b>A</b>) The number and length distributions of subreads from SMRT sequencing. (<b>B</b>) The number and length distributions of unigenes from Illumina sequencing.</p>
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<p>Comparison of the transcripts from SMART and Illumina sequencing in hairy vetch and smooth vetch. Consensus isoforms were from SMART sequencing and unigenes were from Illumina sequencing. The number and proportion of shared and unique transcripts were shown in the Venn diagram.</p>
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<p>Functional classifications of the annotated transcripts from hairy vetch and smooth vetch. (<b>A</b>) The distribution of GO terms in three categories of biological process, cellular component, and molecular function. (<b>B</b>) KEGG pathway classification in five categories of organismal systems, cellular processes, environmental information processing, genetic information processing, and metabolism. (<b>C</b>) KOG functional classification in four categories of cellular processes and signaling, metabolism, information storage and processing, and poorly characterized. Color code indicates the type of categories.</p>
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<p>Comparison of open reading frames (ORFs) from hairy vetch and smooth vetch. (<b>A</b>) The proportions of four CDS types in two vetch transcriptomes. (<b>B</b>) The number and length distributions of complete CDSs. (<b>C</b>) Orthology analysis of two vetches by OrthoVenn2. The numbers of shared and unique clusters, singletons are shown.</p>
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<p>Detection and analysis of AS events in hairy vetch and smooth vetch. (<b>A</b>) Distribution of isoform numbers for UniTransModels. (<b>B</b>) Number of different types of AS events. RI, retained intron; SE, skipping exon; A5, alternative 5′ splice-site; A3, alternative 3′ splice-site; AF, alternative first exon; AL, alternative last exon.</p>
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<p>The number of predicted lncRNAs in hairy vetch and smooth vetch via CPAT, CPC2, LGC and PLEK analysis.</p>
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<p>Analysis of phylogeny and selection pressure of hairy vetch and smooth vetch. (<b>A</b>) Phylogenetic relationships of hairy vetch and smooth vetch. Lineages in red utilize the <span class="html-italic">Vicia</span> clade. Branch lengths were labeled above the line. (<b>B</b>) Distribution of Ka/Ks ratios of orthologs between hairy vetch and smooth vetch. Ka/Ks ratios &lt;0.5 present purifying selection, while Ka/Ks ratios &gt;1 present positive selection.</p>
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30 pages, 2460 KiB  
Review
Recent Advances of Small Extracellular Vesicles for the Regulation and Function of Cancer-Associated Fibroblasts
by Chengdong Liang, Maoye Wang, Yongli Huang, Judy Wai Ping Yam, Xu Zhang and Xiaoxin Zhang
Int. J. Mol. Sci. 2024, 25(23), 12548; https://doi.org/10.3390/ijms252312548 - 22 Nov 2024
Viewed by 457
Abstract
Cancer-associated fibroblasts (CAFs) are a heterogeneous cell population in the tumor microenvironment (TME) that critically affect cancer progression. Small extracellular vesicles (sEVs) act as information messengers by transmitting a wide spectrum of biological molecules, including proteins, nucleic acids, and metabolites, from donor cells [...] Read more.
Cancer-associated fibroblasts (CAFs) are a heterogeneous cell population in the tumor microenvironment (TME) that critically affect cancer progression. Small extracellular vesicles (sEVs) act as information messengers by transmitting a wide spectrum of biological molecules, including proteins, nucleic acids, and metabolites, from donor cells to recipient cells. Previous studies have demonstrated that CAFs play important roles in tumor progression by regulating tumor cell proliferation, metastasis, therapeutic resistance, and metabolism via sEVs. In turn, tumor-derived sEVs can also regulate the activation and phenotype switch of CAFs. The dynamic crosstalk between CAFs and cancer cells via sEVs could ultimately determine cancer progression. In this review, we summarized the recent advance of the biological roles and underlying mechanisms of sEVs in mediating CAF-tumor cell interaction and its impact on cancer progression. We also reviewed the clinical applications of tumor- and CAF-derived sEVs, which could identify novel potential targets and biomarkers for cancer diagnosis, therapy, and prognosis. Full article
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<p>The origins of CAFs. CAFs are mainly derived from normal fibroblasts, MSCs, stellate cells, bone marrow stromal cells, epithelial cells, endothelial cells, pericytes, adipocytes, tumor stem cells, and smooth muscle cells.</p>
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<p>The sEV-mediated communication axis between CAFs and tumor cells. Tumor cells can interact with CAFs via sEVs to regulate tumor progression and stromal microenvironment formation.</p>
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<p>Role of sEVs between CAFs and tumor cells. Activated CAFs in the TME release sEVs to tumor cells and mediate both pro- and anti-tumor effects. The main effects include modulating tumor cell proliferation, metastasis, therapeutic resistance, and metabolic reprogramming. In addition, tumor cells also promote the activation of normal fibroblasts into CAFs and phenotypic switching of CAFs through sEVs.</p>
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<p>Clinical application related to sEV biogenesis and function. Several approaches have been designed to specifically block the biogenesis of sEVs in tumor cells, mainly including the use of viruses carrying functional nucleic acids or small-molecule inhibitors. Moreover, engineering sEVs to carry drugs, siRNA, antibodies, or CRISPR/Cas9 can directly target the lesion and inhibit tumor cells. In addition, liquid biopsy analysis of sEVs is beneficial for diagnosis and prognosis.</p>
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19 pages, 3898 KiB  
Article
KARAN: Mitigating Feature Heterogeneity and Noise for Efficient and Accurate Multimodal Medical Image Segmentation
by Xinjia Gu, Yimin Chen and Weiqin Tong
Electronics 2024, 13(23), 4594; https://doi.org/10.3390/electronics13234594 - 21 Nov 2024
Viewed by 425
Abstract
Multimodal medical image segmentation is challenging due to feature heterogeneity across modalities and the presence of modality-specific noise and artifacts. These factors hinder the effective capture and fusion of information, limiting the performance of existing methods. This paper introduces KARAN, a novel end-to-end [...] Read more.
Multimodal medical image segmentation is challenging due to feature heterogeneity across modalities and the presence of modality-specific noise and artifacts. These factors hinder the effective capture and fusion of information, limiting the performance of existing methods. This paper introduces KARAN, a novel end-to-end deep learning model designed to overcome these limitations. KARAN improves feature representation and robustness to intermodal variations through two key innovations: First, KA-MLA, a novel attention block incorporating State Space Model (SSM) and Kolmogorov–Arnold Network (KAN) characteristics into Transformer blocks for efficient, discriminative feature extraction from heterogeneous modalities. Building on KA-MLA, we propose KA-MPE for multi-path parallel feature extraction to avoid multimodal feature entanglement. Second, RanPyramid leverages random convolutions to enhance modality appearance learning, mitigating the impact of noise and artifacts while improving feature fusion. It comprises two components: an Appearance Generator, creating diverse visual appearances, and an Appearance Adjuster, dynamically modulating their weights to optimize model performance. KARAN achieves high segmentation accuracy with lower computational complexity on two publicly available datasets, highlighting its potential to significantly advance medical image analysis. Full article
(This article belongs to the Special Issue Artificial Intelligence in Image and Video Processing)
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<p>Illustration of the proposed KARAN, consisting of three parts: KA-MPE (with KA-MLA block), RanPyramid, and Segmentation Net. KA-MPE is proposed for multimodal feature extraction based on KA-MLA blocks. RanPyramid is proposed for multimodal feature fusion. The segmentation net is a U-Net-like network.</p>
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<p>Illustration of the components of the proposed KA-MLA block. (<b>a</b>) The attention path KA-MLA, where KAN-L denotes the linear KAN operation. (<b>b</b>) the proposed weight conditioner. (<b>c</b>) Illustration of KAN.</p>
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<p>Illustration of RanPyramid. Once the generated appearances are selected, weighted, and assigned to their corresponding modality images (e.g., red and purple boxes in <a href="#electronics-13-04594-f004" class="html-fig">Figure 4</a>). Each image receives the appearance best suited to its characteristics, and the enhanced images are fused for a unified representation.</p>
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<p>Illustration of random convolution. Random convolution randomizes local texture while preserving shape. <span class="html-italic">K</span> is the kernel size, and <math display="inline"><semantics> <mi>α</mi> </semantics></math> is the transparency mixing coefficient. The images are from the COVID-19 CT segmentation dataset [<a href="#B59-electronics-13-04594" class="html-bibr">59</a>].</p>
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<p>Performance comparison on HECKTOR21.</p>
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<p>Performance comparison on PI-CAI22.</p>
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<p>Visual comparison of results on HECKTOR21.</p>
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<p>Visual comparison of results on PI-CAI22.</p>
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<p>Comparison between Transformer and KA-MLA. KAN-L denotes KAN for linear transformation operation. (<b>a</b>) Transformer based on multi-head self-attention. (<b>b</b>) KA-MLA (ours).</p>
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<p>Performance comparison of RanPyramid and a multi-scale feature pyramid using convolutions with different kernel sizes. (<b>a</b>) Multi-scale feature pyramid based on convolutions. (<b>b</b>) RanPyramid (ours).</p>
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