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25 pages, 20418 KiB  
Article
Differential Evolution and Main Controlling Factors of Inner-Platform Carbonate Reservoirs in Restricted–Evaporative Environment: A Case Study of O2m56 in the Ordos Basin, North China
by Mengying Yang, Xiucheng Tan, Zhaolei Fei, Zixing Lu, Wancai Nie, Ying Xiong, Di Xiao, Jie Xu, Shoukang Zhong and Jingkang Yong
Minerals 2025, 15(3), 236; https://doi.org/10.3390/min15030236 - 26 Feb 2025
Viewed by 179
Abstract
The potential for oil and gas exploration within inter-salt reservoirs is substantial, primarily due to their significant heterogeneity, which complicates accurate predictions. This study focuses on the inter-salt reservoirs of the sixth sub-member of the fifth member of the Majiagou Formation (hereafter referred [...] Read more.
The potential for oil and gas exploration within inter-salt reservoirs is substantial, primarily due to their significant heterogeneity, which complicates accurate predictions. This study focuses on the inter-salt reservoirs of the sixth sub-member of the fifth member of the Majiagou Formation (hereafter referred to as O2m56) in the Ordos Basin, North China. Utilizing core samples, thin sections, and petrophysical data, we investigated the differential evolution and primary controlling factors of the inter-salt carbonate reservoirs. The key findings are as follows: (1) During the sedimentary phase of O2m56, high-energy sediments, such as shoals and microbial mounds, were deposited in highlands, while low-energy sediments, including dolomitic lagoons and gypsiferous lagoons, emerged in depressions from west to east. (2) In a restricted–evaporative environment, highlands are prone to karstification, which significantly enhances the development of inter-salt reservoirs and generates a variety of reservoir spaces, including interparticle dissolved pores, growth-framework dissolved pores, and micropores between vadose silts. (3) The presence of alternating highlands and depressions obstructs seawater flow, leading to a progressive increase in salinity from west to east. This process ultimately facilitates the infilling of reservoir spaces with calcite, anhydrite, and halite cements in the same direction. (4) The three components—reservoir rocks, karstification, and infilling features—exert varying effects in the region and collectively govern the north–south distribution of inter-salt reservoirs. Overall, this study examines the characteristics and controlling factors of carbonate reservoirs within a restricted–evaporative platform environment and provides pertinent research cases for the exploration of inter-salt reservoirs. Full article
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<p>Geologic setting of the Ordos Basin. (<b>a</b>) Lithofacies paleogeographic map of the North China Plate and location of the Ordos Basin (after [<a href="#B24-minerals-15-00236" class="html-bibr">24</a>]). (<b>b</b>) Classification of Ordovician strata and evolution of sea-level change in the Ordos Basin (after [<a href="#B25-minerals-15-00236" class="html-bibr">25</a>]). (<b>c</b>) Paleogeomorphological map of O<sub>2</sub>m<sub>5</sub><sup>6</sup> in central–eastern Ordos Basin (modified after [<a href="#B17-minerals-15-00236" class="html-bibr">17</a>]). (<b>d</b>) Geomorphic section of O<sub>2</sub>m<sub>5</sub><sup>6</sup> in central–eastern Ordos Basin (TWD is Taolimiao west depression; TH is Taolimiao highland; TED is Taolimiao east depression; HH highland is Hengshan highland; ESD is East salty depression).</p>
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<p>Lithological sequence correlation profile of O<sub>2</sub>m<sub>5</sub><sup>6</sup> across central–eastern Ordos Basin (profile location shown in <a href="#minerals-15-00236-f001" class="html-fig">Figure 1</a>c).</p>
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<p>Lithological sequence, karstification intensity, and reservoir properties of geomorphic units in central–eastern Ordos Basin (AB is the breccia of anhydrite; section cross Wells T105–T78–JT1–T112–J5, with the location shown in <a href="#minerals-15-00236-f001" class="html-fig">Figure 1</a>c; location of the coring interval is shown in red bar in <a href="#minerals-15-00236-f002" class="html-fig">Figure 2</a>).</p>
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<p>Macroscopic and microscopic characteristics of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoirs in Zone A. (<b>a</b>) Dolarenite/rudaceous dolomite, Well T105, 3668.52 m. (<b>b</b>) Dolarenite, Well T62, 3625.60 m. (<b>c</b>) Crystalline dolomite, Well T105, 3678.40 m. (<b>d</b>) Micritic-crystalline dolomite, Well T105, 3668.96 m. (<b>e</b>) Dolarenite/rudaceous dolomite, Well T105, 3668.52 m, with interparticle dissolved pores. (<b>f</b>) Dolarenite, Well T62, 3625.60 m, with interparticle dissolved pores infilled with dolomite and vadose silt. (<b>g</b>) Crystalline dolomite, Well T105, 3678.40 m, with moldic pores and dissolved fractures, residual particles visible. The pores are suspected to contain solid bitumen. (<b>h</b>) Crystalline dolomite, Well T105, 3724.00 m, with intercrystalline micropores. The pores are suspected to contain solid bitumen. (<b>i</b>) Micritic-crystalline dolomite, Well T105, 3668.96 m, with bedding intercrystalline dissolved pores.</p>
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<p>Macroscopic and microscopic characteristics of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoirs in Zone B. (<b>a</b>) Dolarenite, Well Sh367, 3903.75 m. (<b>b</b>) Oolitic dolomite, Well T78, 3765.20 m. (<b>c</b>) Thrombolite, Well L105, 3987.83 m. (<b>d</b>) Caves are infilled with breccia, Well T78, 3764.36 m. (<b>e</b>) Dolarenite, Well Sh367, 3903.75 m, with interparticle dissolved pores, infilled with saddle-shaped dolomite and anhydrite. (<b>f</b>) Micritic dolomite with sand-sized particles, Well T78, 3764.80 m, with intercrystalline dissolved pores and moldic pores. (<b>g</b>) Oolitic dolomite, Well T78, 3765.20 m, with intraparticle dissolved pores and channel. The channel is infilled with saddle-shaped dolomite. (<b>h</b>) Binding dolarenite, Well T78, 3764.59 m, with growth-framework dissolved pores. (<b>i</b>) Thrombolite, Well L105, 3987.83 m, with growth-framework dissolved pores. The lower part is deposited with binding dolarenite. (<b>j</b>) Thrombolite, Well L105, 3987.83 m, with growth-framework dissolved pores, infilled with dolomite. (<b>k</b>) Crystalline dolomite, Well T78, 3760.98 m, with small irregular cavities partly infilled with vadose silt and calcite. (<b>l</b>) Karst breccia dolomite, Well L105, 3986.45 m, with residual micropores. The channel is infilled with vadose silt and saddle-shaped dolomite.</p>
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<p>Macroscopic and microscopic characteristics of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoirs in Zone C. (<b>a</b>) Dolarenite, Well L136, 4107.05 m. (<b>b</b>) Dolarenite/rudaceous dolomite, Well L136, 4112.58 m, locally with fractures, infilled with anhydrite. (<b>c</b>) Thrombolite, Well L136, 4109.30 m. (<b>d</b>) Crystalline dolomite, Well JT1, 3657.30 m, with intercrystalline dissolved pores infilled with dolomite. (<b>e</b>) Dolarenite, Well L136, 4107.05 m, with interparticle pores fully infilled with anhydrite. (<b>f</b>) Dolarenite, Well L136, 4107.05 m, with interparticle pores fully infilled with anhydrite, cross-polarized image. (<b>g</b>) Rudaceous dolomite, Well J2, 3581.88 m, with interparticle pores fully infilled with anhydrite. (<b>h</b>) Thrombolite, Well JT1, 3651.30 m, with growth-framework dissolved pores. (<b>i</b>) Thrombolite, Well L136, 4109.30 m, with growth-framework dissolved pores fully infilled with anhydrite.</p>
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<p>Macroscopic and microscopic characteristics of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoirs in Zone D. (<b>a</b>) Thrombolite, Well Tong 8, 3331.09 m. (<b>b</b>) Stromatolite and thrombolite, Well T112, 3378.16 m, with suture line and growth-framework dissolved pores fully infilled with anhydrite. (<b>c</b>) Thrombolite, Well T112, 3373.83 m, with dissolved pores and the growth-framework dissolved pores infilled with anhydrite. (<b>d</b>) Crystalline dolomite, Well T112, 3386.29 m, with karst caves fully infilled with anhydrite. (<b>e</b>) Thrombolite, Well T112, 3374.79 m, with residual growth-framework dissolved pores infilled with anhydrite. (<b>f</b>) Thrombolite, Well Tong8, 3331.09 m, with growth-framework dissolved pores infilled with anhydrite and calcite. (<b>g</b>) Rudaceous oolitic dolomite, Well T112, 3344.32 m, with intraparticle dissolved pores fully infilled with anhydrite. (<b>h</b>) Rudaceous oolitic dolomite, Well T112, 3344.32 m, with intraparticle dissolved pores fully infilled with anhydrite, cross-polarized image. (<b>i</b>) Crystalline dolomite, Well T112, 3386.29 m, with karst caves fully infilled with anhydrite. There is suspected solid bitumen located between the anhydrite and the bedrock. (<b>j</b>) Crystalline dolomite, Well T112, 3386.29 m, with karst caves fully infilled with anhydrite inside, cross-polarized image. (<b>k</b>) Thrombolite, Well T112, 3374.54 m, with intercrystalline dissolved pores and growth-framework dissolved pores inside. (<b>l</b>) Karst breccia dolomite, Well T112, 3354.96 m, with channel infilled with vadose silt, mud, calcite and anhydrite.</p>
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<p>Macroscopic and microscopic characteristics of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoir in Zone E. (<b>a</b>) Binding dolarenite, Well J5, 3542.08 m, with moldic pores and small irregular cavities. (<b>b</b>) Crystalline dolomite, Well T38, 3630.63 m, with moldic pores infilled with halite, occasionally partially infilled with anhydrite. (<b>c</b>) Crystalline dolomite, Well J5, 3532.89 m, with moldic pores infilled with halite, as well as visible extensive irregular cavities. (<b>d</b>) Micritic dolomite with sand-sized particles, Well J5, 3542.45 m, with small irregular cavities partly infilled with vadose silt. (<b>e</b>) Micritic dolarenite, Well J5, 3542.08 m, with moldic pores. (<b>f</b>) Thrombolite, Well Tong79, 3696.63 m, with growth-framework dissolved pores infilled with halite. (<b>g</b>) Breccia dolomite, Well Tong79, 3685.69 m, infilled with anhydrite between the breccias. (<b>h</b>) Anhydrite-brecciated dolomite, Well Tong79, 3683.52 m, with metasomatic anhydrite between breccias, as well as plane-polarized light. (<b>i</b>) Anhydrite-brecciated dolomite, Well Tong79, 3683.52 m, with metasomatic anhydrite between breccias, cross-polarized image.</p>
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<p>Reservoir properties of geomorphic units in O<sub>2</sub>m<sub>5</sub><sup>6</sup> in central–eastern Ordos Basin. (<b>a</b>) Scatter plot of porosity and permeability of core samples in Zone A. (<b>b</b>) Histogram of porosity distribution for core samples in Zone A. (<b>c</b>) Histogram of permeability distribution for core samples in Zone A (<b>d</b>) Scatter plot of porosity and permeability of core samples in Zone B. (<b>e</b>) Histogram of porosity distribution for core samples in Zone B (<b>f</b>) Histogram of permeability distribution for core samples in Zone B (<b>g</b>) Scatter plot of porosity and permeability of core samples in Zone C. (<b>h</b>) Histogram of porosity distribution for core samples in Zone C (<b>i</b>) Histogram of permeability distribution for core samples in Zone C (<b>j</b>) Scatter plot of porosity and permeability of core samples in Zone D. (<b>k</b>) Histogram of porosity distribution for core samples in Zone D (<b>l</b>) Histogram of permeability distribution for core samples in Zone D (<b>m</b>) Scatter plot of porosity and permeability of core samples in Zone E. (<b>n</b>) Histogram of porosity distribution for core samples in Zone E (<b>o</b>) Histogram of permeability distribution for core samples in Zone E.</p>
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<p>Evolution model of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoir in central–eastern Ordos Basin.</p>
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<p>Controlling factors of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoirs in central–eastern Ordos Basin.</p>
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<p>Thickness map of O<sub>2</sub>m<sub>5</sub><sup>6</sup> reservoirs in central–eastern Ordos Basin.</p>
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21 pages, 1873 KiB  
Article
Study on the Improvement of Temperature Resistance of Starch Drilling Fluid Treatment Agent by Composite Plant Phenols
by Huaizhu Liu, Kangning Zhao, Qingchen Wang, Huafeng Ni, Fan Zhang, Le Xue, Quande Wang and Gang Chen
Processes 2025, 13(3), 622; https://doi.org/10.3390/pr13030622 - 22 Feb 2025
Viewed by 382
Abstract
Modified starch and other natural polymer materials have found extensive applications in drilling fluids. However, conventional modification methods offer limited scope for further enhancing their temperature resistance, typically with the applicable temperature being below 140 °C. This paper presents the preparation of composite [...] Read more.
Modified starch and other natural polymer materials have found extensive applications in drilling fluids. However, conventional modification methods offer limited scope for further enhancing their temperature resistance, typically with the applicable temperature being below 140 °C. This paper presents the preparation of composite plant phenols using walnut shells, peanut shells, straw, and lignin, which are rich in the fundamental “three elements” of plants. To explore the improvement of the temperature resistance of cellulose-based drilling fluid additives, this study investigated the apparent viscosity, dynamic shear force, filtration performance, and adhesion coefficient of water-based drilling fluids supplemented with composite plant phenols. Additionally, the mechanism of action of the composite in drilling fluids was analyzed via infrared spectroscopy. The results revealed that the combined use of starch and composite plant phenols elevated the temperature resistance limit of starch from 160 °C to 180 °C. After aging at 180 °C, the filtration loss of the drilling fluid formulation containing composite plant phenols dropped to 3.6 mL, while the apparent viscosity climbed from 3.1 mPa·s to 13.6 mPa·s. This clearly demonstrates the excellent high-temperature resistance and filtration-reducing capabilities of composite plant phenols. When the addition of cassava starch was 2%, the filtration loss of the drilling fluid system reached a minimum of 6.2 mL. A positively charged gel was identified as the optimal high-temperature-resistant cutting agent. At a dosage of 1%, the dynamic plastic ratio of the formulation increased from 0.51 to 2.11. Tannin extract emerged as the ideal high-temperature-resistant and environmentally friendly drilling fluid treatment agent. After its addition, the apparent viscosity of the drilling fluid system increased from 2.4 mPa·s to 7.3 mPa·s, and the filtration loss decreased from 140 mL to 14.6 mL. Full article
(This article belongs to the Section Environmental and Green Processes)
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<p>Fitting curve of rheological properties of drilling fluid under Bingham model.</p>
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<p>Analysis of filtration error of CPP with different dosages.</p>
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<p>Drilling fluid loss at different temperatures.</p>
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<p>Mud cake with 0.5% graphite drilling fluid formula added.</p>
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<p>Mud cake formulated with 0.5% mica drilling fluid.</p>
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<p>Mud cake formulated with 0.5% sophorolipids drilling fluid.</p>
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<p>Mud cake with 1% potassium silicate drilling fluid formula added at 200 °C.</p>
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<p>Mud cake with 0.5% tannin extract drilling fluid formula added at 200 °C.</p>
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<p>Mud cake with 1% humic acid drilling fluid formula added at 200 °C.</p>
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24 pages, 7921 KiB  
Article
Comprehensive Comparison and Validation of Forest Disturbance Monitoring Algorithms Based on Landsat Time Series in China
by Yunjian Liang, Rong Shang, Jing M. Chen, Xudong Lin, Peng Li, Ziyi Yang, Lingyun Fan, Shengwei Xu, Yingzheng Lin and Yao Chen
Remote Sens. 2025, 17(4), 680; https://doi.org/10.3390/rs17040680 - 17 Feb 2025
Viewed by 209
Abstract
Accurate long-term and high-resolution forest disturbance monitoring are pivotal for forest carbon modeling and forest management. Many algorithms have been developed for this purpose based on the Landsat time series, but their nationwide performance across different regions and disturbance types remains unexplored. Here, [...] Read more.
Accurate long-term and high-resolution forest disturbance monitoring are pivotal for forest carbon modeling and forest management. Many algorithms have been developed for this purpose based on the Landsat time series, but their nationwide performance across different regions and disturbance types remains unexplored. Here, we conducted a comprehensive comparison and validation of six widely used forest disturbance- monitoring algorithms using 12,328 reference samples in China. The algorithms included three annual-scale (VCT, LandTrendr, mLandTrendr) and three daily-scale (BFAST, CCDC, COLD) algorithms. Results indicated that COLD achieved the highest accuracy, with F1 and F2 scores of 81.81% and 81.25%, respectively. Among annual-scale algorithms, mLandTrendr exhibited the best performance, with F1 and F2 scores of 73.04% and 72.71%, and even outperformed the daily-scale BFAST algorithm. Across China’s six regions, COLD consistently achieved the highest F1 and F2 scores, showcasing its robustness and adaptability. However, regional variations in accuracy were observed, with the northern region exhibiting the highest accuracy and the southwestern region the lowest. When considering different forest disturbance types, COLD achieved the highest accuracies for Fire, Harvest, and Other disturbances, while CCDC was most accurate for Forestation. These findings highlight the necessity of region-specific calibration and parameter optimization tailored to specific disturbance types to improve forest disturbance monitoring accuracy, and also provide a solid foundation for future studies on algorithm modifications and ensembles. Full article
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<p>The study area of 12,328 reference forest disturbance samples and two regions. (<b>a</b>) The frequency of forest disturbance; (<b>b</b>) The type of forest disturbance. NE: Northeast China; N: North China; NW: Northwest China; E: East China; S: South China; SW: Southwest China.</p>
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<p>The statistics of reference samples with different forest disturbance types in the six regions of China. NE: Northeast China; N: North China; NW: Northwest China; E: East China; S: South China; SW: Southwest China.</p>
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<p>Sensitivity analysis for determining the optimal thresholds of key parameters in the VCT algorithm across the entire China: (<b>a</b>) Compositing periods; (<b>b</b>) forThrMax; (<b>c</b>) minNdvi. Five points in each line from left to right represent using the maximum Z-score of 2, 3, 4, 5, and 6, respectively. The dotted line represents the 1:1 line.</p>
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<p>Example of forest disturbance monitoring using the six algorithms. (<b>a</b>) VCT; (<b>b</b>) LandTrendr; (<b>c</b>) mLandTrendr; (<b>d</b>) BFAST; (<b>e</b>) CCDC; (<b>f</b>) COLD. IFZ: Integrated Forest Z-score; NBR: Normalized Burn Ratio. The vertical dotted line represents the disturbance date.</p>
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<p>Sensitivity analysis for determining the optimal thresholds of key parameters in the LandTrendr algorithm across the entire China: (<b>a</b>) bestModelProportion; (<b>b</b>) Compositing periods; (<b>c</b>) Indices; (<b>d</b>) maxSegments; (<b>e</b>) pvalThreshold; (<b>f</b>) recoveryThreshold. Five points in each line from left to right represent using the spikeThreshold of 0.6, 0.75, 0.85, 0.9, and 1, respectively. The dotted line represents the 1:1 line.</p>
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<p>Sensitivity analysis for determining the optimal thresholds of the key parameters in the mLandTrendr algorithm across the entire China: (<b>a</b>,<b>b</b>) Index Combinations, 1–5 represent NBR, NDMI, TCW, NDVI, and TCA; (<b>c</b>) Tn. Five points in each line from left to right represent using the Tc of 0.9, 0.95, 0.99, 0.999, and 0.9999, respectively. The dotted line represents the 1:1 line.</p>
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<p>Sensitivity analysis for determining the optimal thresholds of the key parameters in the BFAST algorithm across the entire China: (<b>a</b>) h; (<b>b</b>) harmonics; (<b>c</b>) Indices; (<b>d</b>) period. Five points in each line from left to right represent using the alpha of 0.05, 0.025, 0.01, 0.005, and 0.001, respectively. The dotted line represents the 1:1 line.</p>
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<p>Sensitivity analysis for determining the optimal thresholds of the key parameters in the CCDC algorithm across the entire China: (<b>a</b>) breakpointBands; (<b>b</b>) lambda; (<b>c</b>) maxIterations; (<b>d</b>) minNumOfYearsScaler; (<b>e</b>) minObservations; (<b>f</b>) tmaskBands. Five points in each line from left to right represent using the chi-square distribution thresholds of 0.9, 0.95, 0.99, 0.999, and 0.9999, respectively. The dotted line represents the 1:1 line.</p>
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<p>Sensitivity analysis for determining the optimal thresholds of the five key parameters in the COLD algorithm across the entire China: (<b>a</b>) conObservations; (<b>b</b>) detectBands; (<b>c</b>) minNumOfYearsScaler; (<b>d</b>) nsign; (<b>e</b>) tmaskBands. Five points in each line from left to right represent using the chi-square distribution thresholds of 0.9, 0.95, 0.99, 0.999, and 0.9999, respectively. The dotted line represents the 1:1 line.</p>
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<p>The parameter calibration results for the combination of all optimal thresholds determined through sensitivity analyses for the six algorithms across the entire China. For VCT, five points in each line from left to right represent using the maximum Z-score of 2, 3, 4, 5, and 6, respectively. For LandTrendr, five points in each line from left to right represent using the spikeThreshold of 0.6, 0.75, 0.85, 0.9, and 1, respectively. For mLandTrendr, five points in each line from left to right represent using the Tc of 0.9, 0.95, 0.99, 0.999, and 0.9999, respectively. For BFAST, five points in each line from left to right represent using the alpha of 0.05, 0.025, 0.01, 0.005, and 0.001, respectively. For CCDC and COLD, five points in each line from left to right represent using the chi-square distribution thresholds of 0.9, 0.95, 0.99, 0.999, and 0.9999, respectively. The dotted line represents the 1:1 line.</p>
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<p>Validations of six forest disturbance monitoring algorithms in China.</p>
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<p>Validations of six forest disturbance monitoring algorithms in the six regions of China.</p>
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<p>Validations of six algorithms in monitoring different types of forest disturbance in China.</p>
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<p>Regional example of forest disturbance monitoring using the six algorithms in northeastern China. The first column is Landsat 8 False Color Composited images (R: SWIR1, G: NIR, B: R) on 22 May 2015 and 8 May 2016. The second to last columns are maps of monitored forest disturbance (red colors) by the VCT, LandTrendr, mLandTrendr, BFAST, CCDC, and COLD algorithms. The second and fourth rows are the enlarged views of the blue rectangle in the first and third rows.</p>
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<p>Regional example of forest disturbance monitoring using the six algorithms in southern China. The first column is Landsat 8 False Color Composited images (R: SWIR1, G: NIR, B: R) on 10 November 2010 and 13 November 2011. The second to last columns are maps of monitored forest disturbance (red colors) by the VCT, LandTrendr, mLandTrendr, BFAST, CCDC, and COLD algorithms. The second and fourth rows are the enlarged views of the blue rectangle in the first and third rows.</p>
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28 pages, 6510 KiB  
Review
[MxLy]n[MwXz]m Non-Perovskite Hybrid Halides of Coinage Metals Templated by Metal–Organic Cations: Structures and Photocatalytic Properties
by Piotr W. Zabierowski
Solids 2025, 6(1), 6; https://doi.org/10.3390/solids6010006 - 8 Feb 2025
Viewed by 358
Abstract
This review provides an analysis of non-perovskite hybrid halides of coinage metals templated by metal–organic cations (CCDC November 2023). These materials display remarkable structural diversity, from zero-dimensional molecular complexes to intricate three-dimensional frameworks, allowing fine-tuning of their properties. A total of 208 crystal [...] Read more.
This review provides an analysis of non-perovskite hybrid halides of coinage metals templated by metal–organic cations (CCDC November 2023). These materials display remarkable structural diversity, from zero-dimensional molecular complexes to intricate three-dimensional frameworks, allowing fine-tuning of their properties. A total of 208 crystal structures, comprising haloargentates, mixed-metal haloargentates, and halocuprates, are categorized and examined. Their potential in photocatalysis is discussed. Special attention is given to the structural adaptability of these materials for the generation of functional interfaces. This review highlights key compounds and aims to inspire further research into optimizing hybrid halides for advanced technological applications. Full article
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<p>Some of the characteristic structures of hybrid haloargentates from the CSD. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, chlorine—bright green, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, nickel—green, copper—dark orange, silver—gray, zinc—dark blue.</p>
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<p>Some of the characteristic structures of hybrid haloargentates from the CSD. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, chlorine—bright green, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, sulfur—yellow, silver—gray, zinc—dark blue, iron—light red, manganese—light purple, ruthenium—turquoise.</p>
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<p>Some of the characteristic structures of hybrid haloargentates from the CSD. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, sulfur—yellow, copper—dark orange, silver—gray, zinc—dark blue, vanadium—gray, iron—light red, neodymium—light green.</p>
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<p>Some of the characteristic structures of hybrid haloargentates from the CSD. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, chlorine—bright green, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, sulfur—yellow, aluminum—pink, copper—dark orange, silver—gray, zinc—dark blue, lead—dark gray, potassium—dark violet, barium—green, lanthanum—light blue, dysprosium—light green.</p>
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<p>Some of the characteristic structures of hybrid haloargentates from the CSD. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, chlorine—bright green, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, sulfur—yellow, nickel—green, silver—gray (polyhedron), cobalt—violet, iron—light red, manganese—light purple, barium—green (polyhedron), lead—dark gray, praseodymium—light green (polyhedron), dysprosium—light green.</p>
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<p>Some of the characteristic structures of mixed-metal haloargentate structures. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, sulfur—yellow, nickel—green, iron—dark orange, silver—gray, zinc—dark blue, lead—dark gray, barium—green, potassium—dark violet, neodymium—light green.</p>
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<p>Some of the characteristic structures of halocuprate structures. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. For the structure of VAHWAD the hydrogen atoms were omitted. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, chlorine—bright green, bromine—dark orange, iodine—purple, nitrogen—blue, oxygen—red, sulfur—yellow, copper—dark orange, barium—green, lithium—pink.</p>
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<p>Some of the characteristic structures of halocuprate compounds. The lines correspond to the unit cell dimensions and the letter codes to CSD codes. The colors of the atoms in a ball and stick representation: carbon—dark gray, hydrogen—light gray, chlorine—bright green, bromine—dark orange, iodine—purple nitrogen—blue, oxygen—red, copper—dark orange, cobalt—violet, manganese—light purple.</p>
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19 pages, 3975 KiB  
Article
Optimization of the Preparation Process of Crosslinked Polyvinyl Alcohol and Its Thermal Stability in Cementing Slurry
by Junhao Li, Haochen Ai, Qingchen Wang, Huifeng He, Xiaofeng Chang, Gang Chen, Alena Golian-Struhárová, Michal Slaný and Fangling Qin
Gels 2025, 11(2), 98; https://doi.org/10.3390/gels11020098 - 30 Jan 2025
Viewed by 565
Abstract
This study focuses on addressing the limitations of fluid loss additive in cement slurry under higher temperatures. The synthesis process of glutaraldehyde-crosslinked polyvinyl alcohol (PVA) was optimized to develop an efficient fluid loss additive for oil well cement slurries. Using one-factor experiments and [...] Read more.
This study focuses on addressing the limitations of fluid loss additive in cement slurry under higher temperatures. The synthesis process of glutaraldehyde-crosslinked polyvinyl alcohol (PVA) was optimized to develop an efficient fluid loss additive for oil well cement slurries. Using one-factor experiments and the uniform design method, the optimal synthesis parameters were established: a reaction temperature of 50 °C; an acid concentration of 1 mol/L; a PVA mass concentration of 8%; a molar ratio of glutaraldehyde to PVA hydroxyl group of 1.47; and a crosslinking degree of 1.49%. The optimized crosslinked PVA demonstrated the ability to control API fluid loss within 50 mL when applied at 1% concentration in cement slurry under conditions of 30–110 °C and 6.9 MPa. Rheological analysis at medium and high temperatures revealed improved slurry properties, including smooth thickening curves and unaffected compressive strength. Further analyses, including thermogravimetric analysis (TGA), Zeta potential testing, and scanning electron microscopy (SEM), revealed that the crosslinked PVA hydrogel remained thermally stable up to 260 °C. Chemical crosslinking transformed the linear PVA into a network structure, enhancing its molecular weight, viscoelasticity, and thermal stability. This thermal resistance mechanism is attributed to the hydrogel’s high-strength reticular structure which forms a uniform, dense, and highly stable adsorption layer, thereby improving both the additive’s efficiency and the hydrogel’s temperature resistance. Full article
(This article belongs to the Special Issue Advances in Functional Hydrogels and Their Applications)
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<p>Effect of reaction temperature on crosslinking degree.</p>
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<p>Effect of reaction time on crosslinking degree under different acid concentrations.</p>
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<p>Influence of PVA mass fraction on crosslinking degree.</p>
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<p>Effect of molar ratio of glutaraldehyde to PVA hydroxyl groups on crosslinking degree.</p>
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<p>The influence of the crosslinking degree of crosslinked PVA on filtration loss.</p>
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<p>The effect of crosslinked PVA concentration on fluid loss performance.</p>
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<p>Thickening curves of cement slurry at different temperatures. ((<b>a</b>) Thickening curve at 60 °C; (<b>b</b>) thickening curve at 90 °C; (<b>c</b>) thickening curve at 110 °C; (<b>d</b>) thickening curve at 110 °C + retarding agent).</p>
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<p>Thickening curves of cement slurry at different temperatures. ((<b>a</b>) Thickening curve at 60 °C; (<b>b</b>) thickening curve at 90 °C; (<b>c</b>) thickening curve at 110 °C; (<b>d</b>) thickening curve at 110 °C + retarding agent).</p>
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<p>TGA of crosslinked PVA.</p>
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<p>Effect of crosslinked PVA concentration on Zeta potential.</p>
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<p>Adsorption amount of crosslinked PVA on cement particle surfaces.</p>
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<p>SEM image of cement slurry after solidification.</p>
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<p>Water loss mechanism of cement slurry and water loss reduction mechanism of crosslinked PVA.</p>
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<p>Crosslinking reaction of PVA and glutaraldehyde.</p>
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19 pages, 5747 KiB  
Article
Reservoir Fluid Identification Based on Bayesian-Optimized SVM Model
by Hongxi Li, Mingjiang Chen, Xiankun Zhang, Bei Yang, Bin Zhao, Xiansheng Li and Huanhuan Wang
Processes 2025, 13(2), 369; https://doi.org/10.3390/pr13020369 - 28 Jan 2025
Viewed by 418
Abstract
Tight sandstone reservoirs are characterized by fine-grained rock particles, a high clay content, and a complex interplay between the electrical properties and gas content. These factors contribute to low-contrast reservoirs, where the logging responses of the gas and water layers are similar, resulting [...] Read more.
Tight sandstone reservoirs are characterized by fine-grained rock particles, a high clay content, and a complex interplay between the electrical properties and gas content. These factors contribute to low-contrast reservoirs, where the logging responses of the gas and water layers are similar, resulting in traditional logging interpretation charts exhibiting a low accuracy in the fluid-type classification. This inadequacy fails to meet the fluid identification needs of the study area’s reservoirs and severely restricts the exploration and development of unconventional oil and gas resources. To address this challenge, this study proposes a fluid identification method based on Bayesian-optimized Support Vector Machine (SVM) to enhance the accuracy and efficiency of the fluid identification in low-contrast reservoirs. Firstly, through a sensitivity analysis of the logging responses, sensitive logging parameters such as the natural gamma, compensated density, compensated neutron, and compensated sonic logs are selected as input data for the model. Subsequently, Bayesian optimization is employed to automatically search for the optimal combination of hyperparameters for the SVM model. Finally, an SVM model is established using the optimized hyperparameters to classify and identify the following four fluid types: water layers, gas layers, gas–water layers, and dry layers. The proposed method is applied to fluid identification in the study area, and comparative experiments are conducted with the K-Nearest Neighbor (KNN), Random Forest (RF), and AdaBoost models. The classification performance of each model is systematically evaluated using metrics such as the accuracy, recall, and F1-score. The experimental results indicate that the SVM model outperforms the other models in fluid identification, achieving an average accuracy of 91.41%. This represents improvements of 16.94%, 4.39%, and 8.30% over the KNN, RF, and AdaBoost models, respectively. These findings validate the superiority of the SVM model for fluid identification in the study area and provide an efficient and feasible solution for fluid identification in tight sandstone reservoirs. Full article
(This article belongs to the Section Energy Systems)
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<p>Optimal hyperplane.</p>
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<p>BO-SVM training and prediction process.</p>
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<p>Cross-plots of the logging response characteristics for different fluids. The mean value of the GR curve was 67.58 API with a standard deviation of 14.03 API; the mean value of the RT curve was 18.41 Ω-m with a standard deviation of 10.9 Ω-m; the mean value of the DEN curve was 2.47 g/cm<sup>3</sup> with a standard deviation of 0.07 g/cm<sup>3</sup>; the mean value of the CNL curve was 8.7% with a standard deviation of 3.3%; the mean value of the AC curve was 64.6 us/ft with a standard deviation was 3.7 us/ft.</p>
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<p>Boxplots of different fluid log responses in the test set: (<b>a</b>) Natural gamma boxplot; (<b>b</b>) Deep resistivity boxplot; (<b>c</b>) Compensated density boxplot; (<b>d</b>) Compensated neutron boxplot; (<b>e</b>) Compensated sonic boxplot.</p>
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<p>Sample sizes of the four fluid datasets.</p>
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<p>Confusion matrices of the SVM model fluid identification before and after the synthetic minority oversampling. (<b>a</b>) Recognition results before the synthetic minority oversampling. (<b>b</b>) Recognition results after the synthetic minority oversampling.</p>
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<p>Bayesian optimization results.</p>
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<p>Importance proportion of the hyperparameters. (<b>a</b>) Importance proportion of the SVM hyperparameters; (<b>b</b>) Importance proportion of the RF hyperparameters; (<b>c</b>) Importance proportion of the AdaBoost hyperparameters.</p>
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<p>Fluid identification accuracy and average accuracy for the different models. (<b>a</b>) SVM model; (<b>b</b>) KNN model; (<b>c</b>) RF model; (<b>d</b>) AdaBoost model.</p>
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<p>Confusion matrix for the fluid identification by the different models. (<b>a</b>) SVM model; (<b>b</b>) KNN model; (<b>c</b>) RF model; (<b>d</b>) AdaBoost model.</p>
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<p>Fluid identification results by the different models.</p>
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<p>Multi-model fusion framework for fluid identification.</p>
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16 pages, 17291 KiB  
Article
Numerical Simulation of Particle Migration and Settlement in Hydraulic Fractures Using the Multiphase Particle-in-Cell Method
by Youshi Jiang, Zhibin He, Shuxia Jiang, Mouxiang Cai, Fujian Liu and Ying Yuan
Processes 2025, 13(2), 363; https://doi.org/10.3390/pr13020363 - 28 Jan 2025
Viewed by 490
Abstract
Solid–liquid two-phase flow often occurs when pumping proppant or temporary plugging agents into hydraulically fractured wells. The final distribution of these injected particles in the fracture has an important influence on the well productivity after hydraulic fracturing. This paper focuses on simulating and [...] Read more.
Solid–liquid two-phase flow often occurs when pumping proppant or temporary plugging agents into hydraulically fractured wells. The final distribution of these injected particles in the fracture has an important influence on the well productivity after hydraulic fracturing. This paper focuses on simulating and analyzing particle migration within slug injection hydraulic fractures in the Sulige gas reservoir. In this study, a particle migration and settlement model in hydraulic fractures is established based on the Multiphase Particle-in-Cell (MP-PIC) method, allowing for effective simulation of particle migration and settlement in fractures. This model is validated by the results of particle-pumping experiments. The influences of fluid viscosity, injection rate, particle density, particle diameter, and particle concentration on the distribution of particles are studied. The results indicate that keeping the viscosity of the particle-carrying liquid above 50 mPa·s is necessary. It is recommended to keep the liquid viscosity above 200 mPa·s so that the particles can move farther in the fractures. For pulse fracturing, a lower flow rate leads to a more dispersed distribution of particles, but for temporary plugging with particles, a lower flow rate can lead to a decrease in particle concentration and reduce the success rate of temporary plugging. Low particle density can lead to more dispersed particles, but the amount of particle settlement will be less, so from the perspective of pulse fracturing, it is recommended that the particle density should not be lower than 2200 kg/m3. Similarly, the particle size should not be too large for pulse fracturing, and the initial particle concentration should be maintained above 18%. Full article
(This article belongs to the Special Issue Advanced Fracturing Technology for Oil and Gas Reservoir Stimulation)
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<p>Schematic diagram of the fracture physical model.</p>
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<p>Distribution of the particle distribution at an injection rate of 15 L/min.</p>
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<p>The distribution of particle concentrations. The different colors represent different particle concentrations; the legend on the bottom shows that the red area has a higher particle concentration, and the blue area has a lower particle concentration.</p>
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<p>Calculation of the concentration of particles.</p>
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<p>Particle distributions under different liquid viscosities of 50 mPa<math display="inline"><semantics> <mrow> <mspace width="0.166667em"/> <mi>·</mi> <mspace width="0.166667em"/> </mrow> </semantics></math>s, 100 mPa<math display="inline"><semantics> <mrow> <mspace width="0.166667em"/> <mi>·</mi> <mspace width="0.166667em"/> </mrow> </semantics></math>s, 150 mPa<math display="inline"><semantics> <mrow> <mspace width="0.166667em"/> <mi>·</mi> <mspace width="0.166667em"/> </mrow> </semantics></math>s, 200 mPa<math display="inline"><semantics> <mrow> <mspace width="0.166667em"/> <mi>·</mi> <mspace width="0.166667em"/> </mrow> </semantics></math>s, 250 mPa<math display="inline"><semantics> <mrow> <mspace width="0.166667em"/> <mi>·</mi> <mspace width="0.166667em"/> </mrow> </semantics></math>s and 300 mPa<math display="inline"><semantics> <mrow> <mspace width="0.166667em"/> <mi>·</mi> <mspace width="0.166667em"/> </mrow> </semantics></math>s.</p>
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<p>The influence of liquid viscosity on particle concentration.</p>
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<p>Particle distributions under different injection rates of 36 L/min, 42 L/min, 48 L/min, 54 L/min, 60 L/min and 66 L/min.</p>
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<p>The influence of injection rate on particle concentration.</p>
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<p>Particle distributions under different particle densities of 1200 <math display="inline"><semantics> <mrow> <mi>kg</mi> <mo>/</mo> <msup> <mi mathvariant="normal">m</mi> <mn>3</mn> </msup> </mrow> </semantics></math>, 1700 <math display="inline"><semantics> <mrow> <mi>kg</mi> <mo>/</mo> <msup> <mi mathvariant="normal">m</mi> <mn>3</mn> </msup> </mrow> </semantics></math>, 2200 <math display="inline"><semantics> <mrow> <mi>kg</mi> <mo>/</mo> <msup> <mi mathvariant="normal">m</mi> <mn>3</mn> </msup> </mrow> </semantics></math>, 2600 <math display="inline"><semantics> <mrow> <mi>kg</mi> <mo>/</mo> <msup> <mi mathvariant="normal">m</mi> <mn>3</mn> </msup> </mrow> </semantics></math> and 3200 <math display="inline"><semantics> <mrow> <mi>kg</mi> <mo>/</mo> <msup> <mi mathvariant="normal">m</mi> <mn>3</mn> </msup> </mrow> </semantics></math>.</p>
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<p>The influence of particle density on particle concentration.</p>
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<p>Particle distributions under different particle diameters of 16/20 mesh, 20/40 mesh and 30/50 mesh.</p>
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<p>The influence of particle diameter on particle concentration.</p>
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<p>Particle distributions under different particle concentrations (volume fractions) of <math display="inline"><semantics> <mrow> <mn>6</mn> <mo>%</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mn>9</mn> <mo>%</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mn>12</mn> <mo>%</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mn>15</mn> <mo>%</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mn>18</mn> <mo>%</mo> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mn>21</mn> <mo>%</mo> </mrow> </semantics></math>.</p>
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<p>The influence of particle concentration (volume fraction) on overall particle concentration.</p>
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24 pages, 22367 KiB  
Article
Laboratory-to-Field Scale Numerical Investigation of Enhanced Oil Recovery Mechanism for Supercritical CO2-Energized Fracturing
by Xiaolun Yan, Ting Zuo, Jianping Lan, Yu Jia and Cong Xiao
Energies 2025, 18(3), 515; https://doi.org/10.3390/en18030515 - 23 Jan 2025
Viewed by 482
Abstract
This study systematically performs multi-scale numerical investigation of supercritical CO2-energized fracturing, widely employed for enhanced oil recovery (EOR) in tight oil and gas reservoirs. Two distinct models, spanning from core scale to field scale, are designed to explore the diffusion patterns [...] Read more.
This study systematically performs multi-scale numerical investigation of supercritical CO2-energized fracturing, widely employed for enhanced oil recovery (EOR) in tight oil and gas reservoirs. Two distinct models, spanning from core scale to field scale, are designed to explore the diffusion patterns of CO2 into the matrix and its impact on crude oil production at varying scales. The core-scale model employs discrete grid regions to simulate the interaction between fractures and the core, facilitating a comprehensive understanding of CO2 diffusion and its interaction with crude oil. Based on the core-scale numerical model, the wellbore treatment process is simulated, investigating CO2 distribution within the core and its influence on crude oil during the well treatment phase. The field-scale model employs a series of grids to simulate fractures, the matrix, and the treatment zone. Additionally, a dilation model is employed to simulate fracture initiation and closure during CO2 fracturing and production processes. The model explores CO2 diffusion and its interaction with crude oil at different shut-in times and various injection rates, analyzing their impact on cumulative oil production within a year. The study concludes that during shut-in, CO2 continues to diffuse deeper into the matrix until CO2 concentration reaches an equilibrium within a certain range. At the core scale, CO2 penetrates approximately 4 cm into the core after a 15-day shut-in, effectively reducing the viscosity within a range of about 3.5 cm. At the field scale, CO2 diffusion extends up to approximately 4 m, with an effective viscosity reduction zone of about 3 m. Results suggest that, theoretically, higher injection rates and longer shut-in times yield better EOR results. However, considering economic factors, a 20-day shut-in period is preferred. Different injection rates indicate varying fracture conduction capabilities upon gas injection completion. Full article
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<p>The relative permeability curves for region ② in Model 1 and the matrix zone in Model 2.</p>
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<p>The relative permeability curves for region ① in Model 1 and fracture zone in Model 2.</p>
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<p>Schematic representation of the core-scale model. We designate the void space of the diffusion cell, excluding the core sample, as Region ①, while the core sample itself is denoted as Region ②.</p>
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<p>Oil field-scale model schematic. ① is fracture region, ② is stimulated reservoir volume (SRV) and ③ is reservoir matrix region.</p>
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<p>Permeability multiplier curve as a function of pressure in the rock.</p>
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<p>CO<sub>2</sub> distribution in the core at different soaking times.</p>
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<p>Distribution of CO<sub>2</sub> (<b>a</b>) and CO<sub>2</sub> diffusion front (<b>b</b>) at different soaking times.</p>
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<p>Distribution of crude oil viscosity in the core at different soaking times. The unit of oil viscosity is cp.</p>
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<p>Distribution of crude oil viscosity (<b>a</b>) and effective viscosity reduction front (<b>b</b>) at different soaking times.</p>
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<p>Distribution of CO<sub>2</sub> (<b>a</b>) and crude oil viscosity (<b>b</b>) at different soaking times under scenario 3 conditions.</p>
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<p>Distribution of CO<sub>2</sub> (<b>a</b>) and crude oil viscosity (<b>b</b>) at different soaking times under scenario 2 conditions.</p>
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<p>Illustration of the CO<sub>2</sub> impact zone. Region A represents an area untouched by CO<sub>2</sub>. Region B is the area influenced by CO<sub>2</sub> diffusion. Region C is where CO<sub>2</sub> interaction with oil and efficiently diminishes the oil’s viscosity.</p>
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<p>CO<sub>2</sub> diffusion distance and effective viscosity reduction distance under different soaking time conditions.</p>
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<p>Time-varying evolution of CO<sub>2</sub> injection rate and bottom-hole pressure during injection phase.</p>
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<p>Pressure distribution at the end of injection. The unit of pressure is KPa.</p>
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<p>CO<sub>2</sub> distribution along (<b>a</b>) and vertical (<b>b</b>) to fractures at different soaking times.</p>
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<p>CO<sub>2</sub> distribution at different soaking times.</p>
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<p>CO<sub>2</sub> distribution at different soaking times.</p>
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<p>Crude oil viscosity distribution along (<b>a</b>) and vertical (<b>b</b>) to fractures at different soaking times.</p>
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<p>Crude oil viscosity distribution at different soaking times. The unit of oil viscosity is cp.</p>
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<p>Crude oil viscosity distribution at different soaking times. The unit of oil viscosity is cp.</p>
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<p>Annual cumulative oil production at different soaking times.</p>
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<p>CO<sub>2</sub> distribution along (<b>a</b>) and vertical (<b>b</b>) to fractures at 30 days of soaking under different gas injection rates.</p>
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<p>Crude oil viscosity distribution along (<b>a</b>) and vertical (<b>b</b>) to fractures at 30 days of soaking under various gas injection rates.</p>
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<p>Fracture conductivity (<b>b</b>) and one-year cumulative oil production (<b>a</b>) at 30 days of soaking under different gas injection rates.</p>
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16 pages, 3781 KiB  
Article
Proximity Labeling-Based Identification of MGAT3 Substrates and Revelation of the Tumor-Suppressive Role of Bisecting GlcNAc in Breast Cancer via GLA Degradation
by Bowen Wang, Xin He, Yue Zhou, Zengqi Tan, Xiang Li, Feng Guan and Lei Lei
Cells 2025, 14(2), 103; https://doi.org/10.3390/cells14020103 - 12 Jan 2025
Viewed by 850
Abstract
Glycosylation plays a critical role in various biological processes, yet identifying specific glycosyltransferase substrates remains a challenge due to the complexity of glycosylation. Here, we employ proximity labeling with biotin ligases BASU and TurboID to map the proximitome of MGAT3, a glycosyltransferase responsible [...] Read more.
Glycosylation plays a critical role in various biological processes, yet identifying specific glycosyltransferase substrates remains a challenge due to the complexity of glycosylation. Here, we employ proximity labeling with biotin ligases BASU and TurboID to map the proximitome of MGAT3, a glycosyltransferase responsible for the biosynthesis of the bisecting GlcNAc structure, in HEK293T cells. This approach enriched 116 and 189 proteins, respectively, identifying 17 common substrates shared with bisecting GlcNAc-bearing proteome obtained via intact glycopeptide enrichment methods. Gene ontology analysis revealed that the enriched proteins were predominantly localized in the exosome, endoplasmic reticulum, and Golgi apparatus, consistent with subcellular localization of MGAT3 substrates. Notably, four novel substrates, GOLM2, CCDC134, ASPH, and ERO1A, were confirmed to bear bisecting GlcNAc modification, validating the utility of the proximity labeling method. Furthermore, we observed that bisecting GlcNAc modification inhibits breast cancer progression by promoting the degradation of α-galactosidase A (GLA). These findings demonstrate the efficacy of proximity labeling in identifying glycosyltransferase substrates and provide insights into the functional impact of bisecting GlcNAc modification. Full article
(This article belongs to the Section Cell Methods)
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<p>Construction and validation of proximity labeling tools in HEK293T cells. (<b>A</b>) Schematic illustration of the biotinylation labeling for MGAT3 substrates (top) and the construction of two fusion proteins, with an HA tag inserted between MGAT3 and biotin ligase (bottom). (<b>B</b>) Agarose gel electrophoresis confirming knock-in fragments at AAVS1 locus. Abbreviations: WT, wild-type; BASU, MGAT3-BASU knock-in; TurboID, MGAT3-TurboID knock-in. (<b>C</b>) Lectin blot analysis of the level of bisecting GlcNAc modification. (<b>D</b>) Validation of the level of protein biotinylation under time-dependent biotin incubation. (<b>E</b>) Validation of the level of protein biotinylation under concentration-dependent biotin incubation.</p>
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<p>Analysis of the MGAT3 proximitome labeled by BASU and TurboID. (<b>A</b>) Flowchart for enrichment and identification of the MGAT3 proximitome. (<b>B</b>) Volcano plot highlighting 116 significantly enriched proteins in biotin-treated MGAT3-BASU cells (<span class="html-italic">p</span>-value &lt; 0.05 and fold change &gt; 2). Known MGAT3 substrates are highlighted in red. (<b>C</b>) Volcano plot highlighting 189 significantly enriched proteins in biotin-treated MGAT3-TurboID cells (<span class="html-italic">p</span>-value &lt; 0.05 and fold change &gt; 2). Known MGAT3 substrates are highlighted in red. (<b>D</b>) Gene ontology (GO) analysis of the MGAT3-BASU proximitome. (<b>E</b>) GO analysis of the MGAT3-TurboID proximitome.</p>
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<p>Identification of bisecting GlcNAc-bearing proteins and validation of novel MGAT3 substrates. (<b>A</b>) Stacked bar chart showing the proportion of bisecting GlcNAc-modified N-GPSMs relative to total N-GPSMs. (<b>B</b>) Venn diagram comparing bisecting GlcNAc-bearing peptides and proteins enriched by Oasis MAX and ZIC-HILIC. (<b>C</b>) GO analysis of 85 identified proteins bearing bisecting GlcNAc modification. (<b>D</b>) Venn diagram comparing two MGAT3 proximitomes with the identified bisecting GlcNAc-bearing proteins. (<b>E</b>) Representative MS/MS spectrum of GOLM2 glycopeptides bearing bisecting GlcNAc. The N-glycosites are highlighted in red and oxidation-methionine is marked in green.</p>
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<p>Effect of the bisecting GlcNAc modification on GLA stability. (<b>A</b>) Volcano plot showing differently expressed proteins between MGAT3/231 cells and Vector/231 cells. (<b>B</b>) Venn diagram comparing MGAT3 proximitome, differently expressed proteins, and bisecting GlcNAc-bearing proteins identified in MDA-MB-231 cells by PHA-E affinity enrichment [<a href="#B30-cells-14-00103" class="html-bibr">30</a>]. (<b>C</b>) Protein abundance of six proteins shared by the MGAT3 proximitome and differently expressed proteins. (<b>D</b>) Western blot analysis of GLA protein level. (<b>E</b>) Quantitative analysis of GLA mRNA level. (<b>F</b>) Representative MS/MS spectrum of GLA glycopeptide bearing bisecting GlcNAc. The N-glycosite is highlighted in red. (<b>G</b>) Western blot analysis of GLA stability under time-dependent CHX treatment (100 μM). ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001; ****, <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Effect of GLA knockdown on the phenotype of MDA-MB-231 cells. (<b>A</b>) Western blot analysis confirming reduced GLA protein level after shRNA transfection. (<b>B</b>) Quantitative analysis of GLA mRNA level. (<b>C</b>) CCK-8 assay evaluating cell proliferation. (<b>D</b>) Flow cytometry analysis evaluating cell proliferation. (<b>E</b>) Transwell assay measuring cell migration. Scale bar: 200 μm. (<b>F</b>) Flow cytometry analysis evaluating cell apoptosis. *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001; ****, <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Effect of GLA overexpression on the phenotype of MGAT3/231 cells. (<b>A</b>) Flow cytometry analysis evaluating cell proliferation. (<b>B</b>) Transwell assay evaluating cell migration. Scale bar: 200 μm. (<b>C</b>) Flow cytometry analysis evaluating cell apoptosis. ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001.</p>
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15 pages, 10011 KiB  
Article
Genome-Wide Association Analysis of Boar Semen Traits Based on Computer-Assisted Semen Analysis and Flow Cytometry
by Xiyan Yang, Jingkun Nie, Yaxuan Zhang, Suqing Wang, Xiaoping Zhu, Zhili Li, Yunxiang Zhao and Xiuguo Shang
Animals 2025, 15(1), 26; https://doi.org/10.3390/ani15010026 - 26 Dec 2024
Viewed by 533
Abstract
Semen quality and persistence are critical for evaluating the usability of individual boars in AI, a standard practice in pig breeding. We conducted GWASs on various semen traits of Duroc boars, including MOT, DEN, ABN, MMP, AIR, and ROS levels. These traits were [...] Read more.
Semen quality and persistence are critical for evaluating the usability of individual boars in AI, a standard practice in pig breeding. We conducted GWASs on various semen traits of Duroc boars, including MOT, DEN, ABN, MMP, AIR, and ROS levels. These traits were assessed using FCM and CASA. A total of 1183 Duroc boars were genotyped using the GeneSeek GGP Porcine 50 K SNP BeadChip. The GWAS was performed using three different models: GLM, MLM, and FarmCPU. Additionally, trait heritability was estimated using single- and multiple-trait PBLUP models, yielding 0.19, 0.29, 0.13, 0.18, 0.11, and 0.14 heritability for MOT, DEN, ABN, MMP, AIR, and ROS, respectively. All semen traits exhibited low heritability except ABN, which demonstrated medium heritability. Nine candidate genes (GPX5, AWN, PSP-II, CCDC62, TMEM65, SLC8B1, TRPV4, UBE3B, and SIRT5) were potentially associated with semen traits. These genes are associated with antioxidant and mitochondrial functions in porcine sperm. Our findings provide insight into the genetic architecture of semen traits in Duroc boars, and the identified SNPs and candidate genes may enhance economic outcomes in the pig breeding industry while improving sperm quality through targeted breeding strategies. Full article
(This article belongs to the Special Issue Genetic Improvement in Pigs)
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<p>Manhattan and QQ plots obtained from the GWAS of DEN, MOT, ABN, MMP, AIR, and ROS traits in Duroc boars by the three models. The <span class="html-italic">x</span>-axis represents the chromosomes, and the <span class="html-italic">y</span>-axis represents the −log<sub>10</sub>(<span class="html-italic">p</span>-value). The dashed lines indicate the thresholds for semen traits in pigs after Bonferroni correction. The dashed line in Manhattan plots (<b>A</b>,<b>C</b>,<b>E</b>,<b>G</b>,<b>I</b>,<b>K</b>) indicates the thresholds for semen traits in pigs. Traits considered are semen density (<b>A</b>,<b>B</b>); sperm motility (<b>C</b>,<b>D</b>); abnormal sperm number (<b>E</b>,<b>F</b>); mitochondrial membrane potential (<b>G</b>,<b>H</b>); sperm acrosomal integrity rate (<b>I</b>,<b>J</b>); and reactive oxygen species level (<b>K</b>,<b>L</b>). Abbreviations: GLM = generalized linear models; MLM = mixed linear model; FarmCPU = fixed and random model circulating probability unification.</p>
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<p>Manhattan and QQ plots obtained from the GWAS of DEN, MOT, ABN, MMP, AIR, and ROS traits in Duroc boars by the three models. The <span class="html-italic">x</span>-axis represents the chromosomes, and the <span class="html-italic">y</span>-axis represents the −log<sub>10</sub>(<span class="html-italic">p</span>-value). The dashed lines indicate the thresholds for semen traits in pigs after Bonferroni correction. The dashed line in Manhattan plots (<b>A</b>,<b>C</b>,<b>E</b>,<b>G</b>,<b>I</b>,<b>K</b>) indicates the thresholds for semen traits in pigs. Traits considered are semen density (<b>A</b>,<b>B</b>); sperm motility (<b>C</b>,<b>D</b>); abnormal sperm number (<b>E</b>,<b>F</b>); mitochondrial membrane potential (<b>G</b>,<b>H</b>); sperm acrosomal integrity rate (<b>I</b>,<b>J</b>); and reactive oxygen species level (<b>K</b>,<b>L</b>). Abbreviations: GLM = generalized linear models; MLM = mixed linear model; FarmCPU = fixed and random model circulating probability unification.</p>
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24 pages, 17809 KiB  
Article
Transcriptomic Characterization Reveals Mitochondrial Involvement in Nrf2/Keap1-Mediated Osteoclastogenesis
by Eiko Sakai and Takayuki Tsukuba
Antioxidants 2024, 13(12), 1575; https://doi.org/10.3390/antiox13121575 - 20 Dec 2024
Viewed by 664
Abstract
Although osteoclasts play crucial roles in the skeletal system, the mechanisms that underlie oxidative stress during osteoclastogenesis remain unclear. The transcription factor Nrf2 and its suppressor, Keap1, function as central mediators of oxidative stress. To further elucidate the function of Nrf2/Keap1-mediated oxidative stress [...] Read more.
Although osteoclasts play crucial roles in the skeletal system, the mechanisms that underlie oxidative stress during osteoclastogenesis remain unclear. The transcription factor Nrf2 and its suppressor, Keap1, function as central mediators of oxidative stress. To further elucidate the function of Nrf2/Keap1-mediated oxidative stress regulation in osteoclastogenesis, DNA microarray analysis was conducted in this study using wild-type (WT), Keap1 knockout (Keap1 KO), and Nrf2 knockout (Nrf2 KO) osteoclasts. Principal component analysis showed that 403 genes, including Nqo1, Il1f9, and Mmp12, were upregulated in Keap1 KO compared with WT osteoclasts, whereas 24 genes, including Snhg6, Ccdc109b, and Wfdc17, were upregulated in Nrf2 KO compared with WT osteoclasts. Moreover, 683 genes, including Car2, Calcr, and Pate4, were upregulated in Nrf2 KO cells compared to Keap1 KO cells. Functional analysis by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analysis showed upregulated genes in Nrf2 KO osteoclasts were mostly enriched in oxidative phosphorylation. Furthermore, GeneMANIA predicted the protein–protein interaction network of novel molecules such as Rufy4 from genes upregulated in Nrf2 KO osteoclasts. Understanding the complex interactions between these molecules may pave the way for developing promising therapeutic strategies against bone metabolic diseases caused by increased osteoclast differentiation under oxidative stress. Full article
(This article belongs to the Special Issue Role of Nrf2 and ROS in Bone Metabolism)
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<p>Microarray analysis of WT, <span class="html-italic">Nrf2</span> KO, and <span class="html-italic">Keap1</span> KO cells. (<b>A</b>) Splenic macrophages from WT, <span class="html-italic">Keap1</span> KO, and <span class="html-italic">Nrf2</span> KO mice were cultured with 30 ng/mL M-CSF and 50 ng/mL RANKL for three days, followed by TRAP staining. Representative photographs showing red-colored osteoclasts. (<b>a</b>) WT, (<b>b</b>) <span class="html-italic">Keap1</span> KO, and (<b>c</b>) <span class="html-italic">Nrf2</span> KO mice. Scale bars: 100 μm. (<b>B</b>) Splenic macrophages from two mice each of WT, <span class="html-italic">Keap1</span> KO, and <span class="html-italic">Nrf2</span> KO were cultured with 30 ng/mL M-CSF and 50 ng/mL RANKL for three days, and RNA was collected from each cell for DNA microarray analysis (single microarray analysis for each cell). Graphs showing scatter plots of (<b>a</b>) <span class="html-italic">Keap1</span> KO cells vs. WT osteoclasts, (<b>b</b>) <span class="html-italic">Nrf2</span> KO osteoclasts vs. WT osteoclasts, and (<b>c</b>) <span class="html-italic">Nrf2</span> KO osteoclasts vs. <span class="html-italic">Keap1</span> KO cells. Green lines indicate log<sub>2</sub>2 or log<sub>2</sub>0.5.</p>
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<p>Validation of microarray data. Upregulated genes in <a href="#antioxidants-13-01575-t001" class="html-table">Table 1</a> were confirmed by qRT-PCR. The relative mRNA levels of <span class="html-italic">Nqo1</span>, <span class="html-italic">Il1f9</span>, <span class="html-italic">Mmp12</span>, <span class="html-italic">Slc39a4</span>, <span class="html-italic">Fabp7</span>, <span class="html-italic">Cxcl14</span>, <span class="html-italic">Gsta3</span>, <span class="html-italic">Rnf128</span>, <span class="html-italic">Ly6g</span>, <span class="html-italic">Tanc2</span>, and <span class="html-italic">Gclm</span> in <span class="html-italic">Keap1</span> KO were confirmed. Data are presented as the mean ± SD from three independent experiments (* <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Validation of microarray data. Downregulated genes in <a href="#antioxidants-13-01575-t002" class="html-table">Table 2</a> were confirmed by qRT-PCR. The relative mRNA levels of <span class="html-italic">Calcr</span>, <span class="html-italic">Scin</span>, <span class="html-italic">Ctsk</span>, <span class="html-italic">Pate4</span>, <span class="html-italic">Ocstamp</span>, <span class="html-italic">Ccr3</span>, <span class="html-italic">Tm4sf19</span>, and <span class="html-italic">Steap4</span> in <span class="html-italic">Keap1</span> KO were confirmed. Data are presented as the mean ± SD from three independent experiments (* <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Validation of microarray data. Upregulated genes in <a href="#antioxidants-13-01575-t003" class="html-table">Table 3</a> were confirmed by qRT-PCR. (<b>A</b>) Significant upregulation of <span class="html-italic">Snhg6</span> and <span class="html-italic">ccdc109b</span> in <span class="html-italic">Nrf2</span> KO osteoclasts derived from splenocyte were confirmed. <span class="html-italic">Ppbp</span> gene expression tended to increase. (<b>B</b>) Significant upregulation of <span class="html-italic">Snhg6</span>, <span class="html-italic">Wfdc17</span>, <span class="html-italic">Ppbp</span>, and <span class="html-italic">Ctsk</span> in <span class="html-italic">Nrf2</span> KO osteoclasts derived from BMMs were confirmed. Data are presented as the mean ± SD from three independent experiments (* <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Validation of microarray data. Downregulated genes in <a href="#antioxidants-13-01575-t004" class="html-table">Table 4</a> were confirmed by qRT-PCR. Significant downregulation of <span class="html-italic">Ctse</span>, <span class="html-italic">Ifi202b</span>, <span class="html-italic">Me1</span>, <span class="html-italic">Cbr3</span>, <span class="html-italic">Thy1</span>, <span class="html-italic">Lrrc32</span>, <span class="html-italic">Rnf128</span>, <span class="html-italic">Cxcl14</span>, <span class="html-italic">Slc7a11</span>, and <span class="html-italic">Nqo1</span> in <span class="html-italic">Nrf2</span> KO osteoclasts were confirmed. Data are presented as the mean ± SD from three independent experiments (* <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Validation of microarray data. Upregulated genes in <a href="#antioxidants-13-01575-t005" class="html-table">Table 5</a> were confirmed by qRT-PCR. Significant upregulation of <span class="html-italic">Calcr</span>, <span class="html-italic">Pate4</span>, <span class="html-italic">Oscar</span>, <span class="html-italic">Scin</span>, <span class="html-italic">Akr1c18</span>, <span class="html-italic">Ctsk</span>, <span class="html-italic">Steap4</span>, <span class="html-italic">Adck3</span>, <span class="html-italic">Tm4sf19</span>, <span class="html-italic">Atp6v0d2</span>, and <span class="html-italic">Ccr3</span> in <span class="html-italic">Nrf2</span> KO osteoclasts were confirmed. Data are presented as the mean ± SD from three independent experiments (** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Validation of microarray data. Downregulated genes in <a href="#antioxidants-13-01575-t006" class="html-table">Table 6</a> were confirmed by qRT-PCR. Significant downregulation of <span class="html-italic">Nqo1</span>, <span class="html-italic">Ctse</span>, <span class="html-italic">Cxcl14</span>, <span class="html-italic">Rnf128</span>, <span class="html-italic">Me1</span>, <span class="html-italic">Mmp12</span>, <span class="html-italic">Slc39a4</span>, <span class="html-italic">Gclm</span>, <span class="html-italic">Slc7a11</span>, <span class="html-italic">Cbr3</span>, and <span class="html-italic">Fabp7</span> in <span class="html-italic">Nrf2</span> KO osteoclasts were confirmed. Data are presented as the mean ± SD from three independent experiments (* <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>GO enrichment analysis. (<b>A</b>) Up- or downregulated genes were analyzed using the Database for Annotation, Visualization, and Integrated Discovery (DAVID) for GO enrichment analysis in <span class="html-italic">Keap1</span> KO cells compared with WT osteoclasts. (<b>B</b>) Up- or downregulated genes were analyzed using DAVID for GO enrichment analysis in <span class="html-italic">Nrf2</span> KO osteoclasts compared with WT osteoclasts. (<b>C</b>) Up- or downregulated genes were analyzed using DAVID for GO enrichment analysis in <span class="html-italic">Nrf2</span> KO osteoclasts compared with <span class="html-italic">Keap1</span> KO cells.</p>
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<p>GO enrichment analysis. (<b>A</b>) Up- or downregulated genes were analyzed using the Database for Annotation, Visualization, and Integrated Discovery (DAVID) for GO enrichment analysis in <span class="html-italic">Keap1</span> KO cells compared with WT osteoclasts. (<b>B</b>) Up- or downregulated genes were analyzed using DAVID for GO enrichment analysis in <span class="html-italic">Nrf2</span> KO osteoclasts compared with WT osteoclasts. (<b>C</b>) Up- or downregulated genes were analyzed using DAVID for GO enrichment analysis in <span class="html-italic">Nrf2</span> KO osteoclasts compared with <span class="html-italic">Keap1</span> KO cells.</p>
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<p>GO enrichment analysis. (<b>A</b>) Up- or downregulated genes were analyzed using the Database for Annotation, Visualization, and Integrated Discovery (DAVID) for GO enrichment analysis in <span class="html-italic">Keap1</span> KO cells compared with WT osteoclasts. (<b>B</b>) Up- or downregulated genes were analyzed using DAVID for GO enrichment analysis in <span class="html-italic">Nrf2</span> KO osteoclasts compared with WT osteoclasts. (<b>C</b>) Up- or downregulated genes were analyzed using DAVID for GO enrichment analysis in <span class="html-italic">Nrf2</span> KO osteoclasts compared with <span class="html-italic">Keap1</span> KO cells.</p>
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<p>KEGG pathway enrichment analysis. Compared to <span class="html-italic">Keap1</span> KO cells, <span class="html-italic">Nrf2</span> KO osteoclasts exhibited a marked increase in expression of genes (surrounded by red lines) involved in oxidative phosphorylation (<b>A</b>) and osteoclast differentiation (<b>B</b>), whereas marked decreased in expression of genes (surrounded by blue lines) involved in focal adhesion (<b>C</b>) and ECM–receptor interaction (<b>D</b>).</p>
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<p>KEGG pathway enrichment analysis. Compared to <span class="html-italic">Keap1</span> KO cells, <span class="html-italic">Nrf2</span> KO osteoclasts exhibited a marked increase in expression of genes (surrounded by red lines) involved in oxidative phosphorylation (<b>A</b>) and osteoclast differentiation (<b>B</b>), whereas marked decreased in expression of genes (surrounded by blue lines) involved in focal adhesion (<b>C</b>) and ECM–receptor interaction (<b>D</b>).</p>
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<p>KEGG pathway enrichment analysis. Compared to <span class="html-italic">Keap1</span> KO cells, <span class="html-italic">Nrf2</span> KO osteoclasts exhibited a marked increase in expression of genes (surrounded by red lines) involved in oxidative phosphorylation (<b>A</b>) and osteoclast differentiation (<b>B</b>), whereas marked decreased in expression of genes (surrounded by blue lines) involved in focal adhesion (<b>C</b>) and ECM–receptor interaction (<b>D</b>).</p>
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<p>Protein–protein interaction network analysis by GeneMANIA. (<b>A</b>) Predicted network of proteins that interact with proteins encoded by the top 40 upregulated genes in <span class="html-italic">Nrf2</span> KO osteoclast against <span class="html-italic">Keap1</span> KO cells. (<b>B</b>) Predicted network of proteins interacting with proteins encoded by genes upregulated in Nrf2 KO osteoclast compared with WT osteoclasts.</p>
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<p>Protein–protein interaction network analysis by GeneMANIA. (<b>A</b>) Predicted network of proteins that interact with proteins encoded by the top 40 upregulated genes in <span class="html-italic">Nrf2</span> KO osteoclast against <span class="html-italic">Keap1</span> KO cells. (<b>B</b>) Predicted network of proteins interacting with proteins encoded by genes upregulated in Nrf2 KO osteoclast compared with WT osteoclasts.</p>
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24 pages, 4996 KiB  
Article
Research and Performance Evaluation of Environmentally Friendly Shale Inhibitor TIL-NH2 for Shale Gas Horizontal Wells
by Yuexin Tian, Xiangjun Liu, Yintao Liu, Haifeng Dong, Guodong Zhang, Biao Su, Xiaofeng Liu, Yifan Hu, Jinjun Huang and Zeze Lu
Molecules 2024, 29(24), 5950; https://doi.org/10.3390/molecules29245950 - 17 Dec 2024
Viewed by 585
Abstract
Wellbore instability caused by hydration during the development of shale gas reservoirs poses significant challenges to drilling engineering. In this study, a novel and environmentally friendly shale inhibitor, TIL-NH2, was synthesized via free radical polymerization using 1-vinylimidazole and N-(2-bromoethyl)-1,3-propanediamine dihydrobromide as [...] Read more.
Wellbore instability caused by hydration during the development of shale gas reservoirs poses significant challenges to drilling engineering. In this study, a novel and environmentally friendly shale inhibitor, TIL-NH2, was synthesized via free radical polymerization using 1-vinylimidazole and N-(2-bromoethyl)-1,3-propanediamine dihydrobromide as the main raw materials. The molecular structure of TIL-NH2 was characterized by infrared spectroscopy and nuclear magnetic resonance. Incorporating imidazole cations and amino bifunctional groups, TIL-NH2 exhibits excellent inhibitory performance and environmental friendliness. Its performance was systematically evaluated through linear swelling tests, shale cuttings rolling recovery tests, permeability recovery experiments, and dynamic adsorption analyses. The results indicate the following: (1) At a concentration of 1.2 wt%, TIL-NH2 reduced the linear swelling height of shale by 65.69%, significantly outperforming traditional inhibitors like KCl and NW-1. (2) Under conditions of 140 °C, the cuttings rolling recovery rate of TIL-NH2 reached 88.12%, demonstrating excellent high-temperature resistance. (3) Permeability recovery experiments showed that at a concentration of 2.0 wt%, TIL-NH2 achieved a permeability recovery rate of 90.58%, effectively mitigating formation damage. (4) Dynamic adsorption experiments indicated that at a concentration of 2.5 wt%, the adsorption capacity tended toward saturation, reaching 26.00 mg/g, demonstrating stable adsorption capability. Additionally, environmental friendliness evaluations revealed that TIL-NH2 has a degradation rate exceeding 90% within 28 days, and its acute toxicity is significantly lower than that of traditional inhibitors like KCl (the LC50 of TIL-NH2 is 1080.3 mg/L, whereas KCl is only 385.4 mg/L). This research provides a high-efficiency and environmentally friendly new inhibitor for green drilling fluid systems in horizontal shale gas wells, offering important references for technological advancements in unconventional energy development. Full article
(This article belongs to the Topic Petroleum and Gas Engineering, 2nd edition)
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<p>Reaction mechanism equation.</p>
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<p>TIL-NH<sub>2</sub> inhibitor infrared spectra [<a href="#B39-molecules-29-05950" class="html-bibr">39</a>].</p>
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<p><sup>1</sup>H-NMR spectrum of TIL-NH<sub>2</sub> [<a href="#B39-molecules-29-05950" class="html-bibr">39</a>].</p>
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<p>Relationship between shale swelling height and immersion time in TIL-NH<sub>2</sub> solutions with different concentrations.</p>
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<p>Relationship between shale swelling height and immersion time under different concentrations of inhibitor solution.</p>
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<p>Variation in heat rolling recovery with TIL-NH<sub>2</sub> addition at different temperatures.</p>
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<p>Heat roll recovery for each inhibitor at 140 °C.</p>
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<p>Expansion stress of illite in response to different solution treatments.</p>
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<p>Influence of TIL-NH<sub>2</sub> concentration on the swelling stress of illite.</p>
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<p>Effect of combined KCl/TIL-NH<sub>2</sub> solutions on illite swelling stress.</p>
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<p>Triaxial stress diagrams of downhole shale of the Longmaxi Formation soaked by different treatments ((<b>a</b>) water, (<b>b</b>) diesel fuel, (<b>c</b>) white oil, (<b>d</b>) 2% DEM, (<b>e</b>) 2% polyetheramine, (<b>f</b>) TIL-NH<sub>2</sub> solution).</p>
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<p>Variation in shale permeability recovery rates at different TIL-NH<sub>2</sub> concentrations.</p>
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<p>Dynamic adsorption as a function of TIL-NH<sub>2</sub> concentration.</p>
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<p>Influence of KCl concentration on the anti-swelling effectiveness of TIL-NH<sub>2</sub>.</p>
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<p>Biodegradation rates of different concentrations of TIL-NH<sub>2</sub> as a function of time.</p>
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<p>Flowchart summarizing the experimental design and workflow of this study.</p>
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9 pages, 3640 KiB  
Proceeding Paper
Theoretical Study of Intermolecular Interactions in Benzopyrans Substituted with Polyhaloalkyl Groups
by Lissette A. Haro-Saltos, Pablo M. Bonilla-Valladares and Christian D. Alcívar-León
Chem. Proc. 2024, 16(1), 32; https://doi.org/10.3390/ecsoc-28-20209 - 13 Dec 2024
Viewed by 434
Abstract
A study of the solid-state intermolecular interactions of twenty-nine benzopyrans substituted with polyhaloalkyl groups was carried out by quantum chemical calculations using the Mercury and WinGX computer programs. Molecular structures were obtained from crystallographic information files (CIF) of the CCDC database. C-H—O, C-H—X, [...] Read more.
A study of the solid-state intermolecular interactions of twenty-nine benzopyrans substituted with polyhaloalkyl groups was carried out by quantum chemical calculations using the Mercury and WinGX computer programs. Molecular structures were obtained from crystallographic information files (CIF) of the CCDC database. C-H—O, C-H—X, C-X—O and C-X—X type contacts, characterized as unconventional hydrogen bonds, were identified and calculated. The criteria used for distances and angles were d(D—A) < R(D) + R(A) + 0.50 and d(H—A) < R(H) + R(A)—0.12°, where D-H—A > 100.0°. D is the donor atom, A is the acceptor atom, R is the Van der Waals radius and d is the interatomic distance. In addition, Etter’s notation was used to describe sets of hydrogen bonds in organic crystals, detailing the intermolecular contacts and periodic arrangements of the crystal packing. It was corroborated that certain positions of halogen atoms and their interactions play an important role in stabilizing the crystal lattice. Full article
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<p>3D Scatter Plot: R vs ETOTAL with color coding for <b>1</b>–<b>29</b> compounds.</p>
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<p>Geometric parameters that involving π-π interactions (A°, °) between heterocycles of chromone ring of <b>1</b>, <b>3</b>–<b>16</b>, <b>20–23</b>, <b>25</b> and <b>26</b> compounds.</p>
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<p>Hydrogen bonding interaction C—H ··· O and C—H ··· F of the <b>8</b> compound.</p>
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<p>π···π stacking and C—O ··· π interactions showing intercentroid interaction and O ··· Cg1 distance of the <b>8</b> compound.</p>
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<p>View of Hirshfeld surfaces in two orientations for compound <b>8</b>. (1) C—H ··· O; (2) C—H ···F of the <b>8</b> compound.</p>
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<p>Hirshfeld surfaces evaluated with the shape index and curvature (curvedness) of the <b>8</b> compound.</p>
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<p>2D fingerprint plot of the close contacts with the greatest contribution as (1) O ··· H, (2) F ··· H (3) H ···H and (4) C ··· C of the <b>8</b> compound.</p>
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<p>Relative contributions of the main intermolecular contacts on the Hirshfeld surface for the set of compounds.</p>
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15 pages, 1689 KiB  
Article
Identifying Significant SNPs of the Total Number of Piglets Born and Their Relationship with Leg Bumps in Pigs
by Siroj Bakoev, Lyubov Getmantseva, Maria Kolosova, Faridun Bakoev, Anatoly Kolosov, Elena Romanets, Varvara Shevtsova, Timofey Romanets, Yury Kolosov and Alexander Usatov
Biology 2024, 13(12), 1034; https://doi.org/10.3390/biology13121034 - 11 Dec 2024
Viewed by 756
Abstract
The aim of this study was to identify genetic variants and pathways associated with the total number of piglets born and to investigate the potential negative consequences of the intensive selection for reproductive traits, particularly the formation of bumps on the legs of [...] Read more.
The aim of this study was to identify genetic variants and pathways associated with the total number of piglets born and to investigate the potential negative consequences of the intensive selection for reproductive traits, particularly the formation of bumps on the legs of pigs. We used genome-wide association analysis and methods for identifying selection signatures. As a result, 47 SNPs were identified, localized in genes that play a significant role during sow pregnancy. These genes are involved in follicle growth and development (SGC), early embryonic development (CCDC3, LRRC8C, LRFN3, TNFRSF19), endometrial receptivity and implantation (NEBL), placentation, and embryonic development (ESRRG, GHRHR, TUSC3, NBAS). Several genes are associated with disorders of the nervous system and brain development (BCL11B, CDNF, ULK4, CC2D2A, KCNK2). Additionally, six SNPs are associated with the formation of bumps on the legs of pigs. These variants include intronic variants in the CCDC3, ULK4, and MINDY4 genes, as well as intergenic variants, regulatory region variants, and variants in the exons of non-coding transcripts. The results suggest important biological pathways and genetic variants associated with sow fertility and highlight the potential negative impacts on the health and physical condition of pigs. Full article
(This article belongs to the Special Issue Reproductive Physiology and Pathology in Livestock)
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<p>The results of enrichment analysis of the genes on the basis of the DL algorithm. Legend: (<b>A</b>) path tree; (<b>B</b>) distribution of paths by degree of enrichment.</p>
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<p>The results of enrichment analysis of the genes on the basis of the RR algorithm. Legend: (<b>A</b>) path tree; (<b>B</b>) distribution of paths by degree of enrichment.</p>
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<p>Distribution of selection signals. Legend: (<b>A</b>) distribution of iHS (integrated haplotype score) signals; (<b>B</b>) distribution of iHH12 (integrated haplotype homozygosity pooled) signals; (<b>C</b>) distribution of nSl (number of segregating sites by length) signals.</p>
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<p>Enrichment of selection signals with quantitative trait loci. Legend: <span class="html-italic">(</span><b>A</b>) enrichment at the QTLs type; <span class="html-italic">(</span><b>B</b>) enrichment at the feature level.</p>
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22 pages, 27970 KiB  
Article
Monthly Prediction of Pine Stress Probability Caused by Pine Shoot Beetle Infestation Using Sentinel-2 Satellite Data
by Wen Jia, Shili Meng, Xianlin Qin, Yong Pang, Honggan Wu, Jia Jin and Yunteng Zhang
Remote Sens. 2024, 16(23), 4590; https://doi.org/10.3390/rs16234590 - 6 Dec 2024
Viewed by 729
Abstract
Due to the significant threat to forest health posed by beetle infestations on pine trees, timely and accurate predictions are crucial for effective forest management. This study developed a pine tree stress probability prediction workflow based on monthly cloud-free Sentinel-2 composite images to [...] Read more.
Due to the significant threat to forest health posed by beetle infestations on pine trees, timely and accurate predictions are crucial for effective forest management. This study developed a pine tree stress probability prediction workflow based on monthly cloud-free Sentinel-2 composite images to address this challenge. First, representative pine tree stress samples were selected by combining long-term forest disturbance data using the Continuous Change Detection and Classification (CCDC) algorithm with high-resolution remote sensing imagery. Monthly cloud-free Sentinel-2 images were then composited using the Multifactor Weighting (MFW) method. Finally, a Random Forest (RF) algorithm was employed to build the pine tree stress probability model and analyze the importance of spectral, topographic, and meteorological features. The model achieved prediction precisions of 0.876, 0.900, and 0.883, and overall accuracies of 89.5%, 91.6%, and 90.2% for January, February, and March 2023, respectively. The results indicate that spectral features, such as band reflectance and vegetation indices, ranked among the top five in importance (i.e., SWIR2, SWIR1, Red band, NDVI, and NBR). They more effectively reflected changes in canopy pigments and leaf moisture content under stress compared with topographic and meteorological features. Additionally, combining long-term stress disturbance data with high-resolution imagery to select training samples improved their spatial and temporal representativeness, enhancing the model’s predictive capability. This approach provides valuable insights for improving forest health monitoring and uncovers opportunities to predict future beetle outbreaks and take preventive measures. Full article
(This article belongs to the Section Forest Remote Sensing)
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Figure 1

Figure 1
<p>Location of the study area in Ning’er County, Puer City, Yunnan Province, China, overlaid on a false-color Sentinel-2 image (R, G, B = SWIR1, NIR, Red bands). The yellow dashed line delineates the study area’s boundaries.</p>
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<p>Field survey of pine stress.</p>
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<p>Overall technical workflow for predicting monthly pine stress probability.</p>
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<p>Reference data based on stress disturbance results. (<b>a</b>) The monthly stress disturbance results from 2019 to 2023; (<b>b</b>) An example of reference sample points displayed on the GF-1, GF-2, Sentinel-2, and Landsat-8 imagery; (<b>c</b>) The spatial distribution of non-stress sample points selected through visual interpretation; (<b>d</b>) The spatial distribution of pine stress sample points selected through visual interpretation.</p>
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<p>Comparison of monthly cloud-free Sentinel-2 composite images and vegetation indices from January to March 2023. The images are displayed as false-color composites (RGB = SWIR1, NIR, Red). A specific site was selected for detailed close-up analysis, showing the imagery, NDVI, and NDWI of the pine stress area affected by beetle infestation.</p>
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<p>Feature importance ranking for pine stress prediction model.</p>
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<p>Predicted pine stress probability for January, February, and March 2023 (<b>left</b>) and spatial distribution of areas with probability greater than 80% (<b>right</b>).</p>
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<p>Site 1: Monthly increase in pine stress level and area from January to March 2023, with Sentinel-2 imagery and stress probability distribution. The dash circles are key focus areas of forest stress.</p>
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<p>Site 2: Monthly decrease in pine stress level and area from January to March 2023, with Sentinel-2 imagery and stress probability distribution. The dash circles are key focus areas of forest stress.</p>
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<p>Site 3: Monthly changes (increase and decrease) in pine stress levels and areas from January to March 2023, with Sentinel-2 imagery and stress probability distribution. The dash circles are key focus areas of forest stress.</p>
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