Resolution: 1.76 Å
EM Method: Single-particle
Fitted PDBs: 9fx1
Q-score: 0.821
Wald J, Goessweiner-Mohr N, Real-Hohn A, Blaas D, Marlovits TC
Sci Rep (2024) 14 pp. 30408-30408 [ DOI: doi:10.1038/s41598-024-81789-x Pubmed: 39639094 ]
- Water (18 Da, Ligand)
- Capsid protein vp4 (1 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
- Lauric acid (200 Da, Ligand)
- Capsid protein vp2 (28 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
- Capsid protein vp3 (23 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
- Capsid protein vp1 (31 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
- Human rhinovirus 89 atcc vr-1199 (Virus from Human rhinovirus 89 ATCC VR-1199)
Resolution: 1.96 Å
EM Method: Single-particle
Fitted PDBs: 9fx9
Q-score: 0.7
Wald J, Goessweiner-Mohr N, Real-Hohn A, Blaas D, Marlovits TC
Sci Rep (2024) 14 pp. 30408-30408 [ DOI: doi:10.1038/s41598-024-81789-x Pubmed: 39639094 ]
- Capsid protein vp2 (27 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
- Capsid protein vp1 (23 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
- Human rhinovirus 89 atcc vr-1199 (Virus from Human rhinovirus 89 ATCC VR-1199)
- Capsid protein vp3 (25 kDa, Protein from Human rhinovirus 89 ATCC VR-1199)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8pnb
Q-score: 0.324
Gil-Cantero D, Mata CP, Valiente L, Rodriguez-Huete A, Valbuena A, Twarock R, Stockley PG, Mateu MG, Caston JR
Commun Biol (2024) 7 pp. 1501-1501 [ DOI: doi:10.1038/s42003-024-07213-2 Pubmed: 39537894 ]
- Genome polyprotein (26 kDa, Protein from rhinovirus B14)
- Capsid protein vp2 (27 kDa, Protein from rhinovirus B14)
- Capsid protein vp1 (26 kDa, Protein from rhinovirus B14)
- Rhinovirus b14 (Virus from rhinovirus B14)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8pnf
Q-score: 0.601
Gil-Cantero D, Mata CP, Valiente L, Rodriguez-Huete A, Valbuena A, Twarock R, Stockley PG, Mateu MG, Caston JR
Commun Biol (2024) 7 pp. 1501-1501 [ DOI: doi:10.1038/s42003-024-07213-2 Pubmed: 39537894 ]
- Capsid protein vp3 (26 kDa, Protein from rhinovirus B14)
- Capsid protein vp1 (31 kDa, Protein from rhinovirus B14)
- Rna (5'-r(p*ap*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (4 kDa, RNA from rhinovirus B14)
- Capsid protein vp2 (27 kDa, Protein from rhinovirus B14)
- Capsid protein vp4 (5 kDa, Protein from rhinovirus B14)
- Rhinovirus b14 (Virus from rhinovirus B14)
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 9b52
Q-score: 0.667
Dagotto G, Fisher JL, Li D, Li Z, Jenni S, Li Z, Tartaglia LJ, Abbink P, Barouch DH
Mol Ther Methods Clin Dev (2024) 32 pp. 101350-101350 [ Pubmed: 39469420 DOI: doi:10.1016/j.omtm.2024.101350 ]
- Capsid protein vp1 (58 kDa, Protein from Adeno-associated virus)
- Adeno-associated virus (Virus from Adeno-associated virus)
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9b53
Q-score: 0.665
Dagotto G, Fisher JL, Li D, Li Z, Jenni S, Li Z, Tartaglia LJ, Abbink P, Barouch DH
Mol Ther Methods Clin Dev (2024) 32 pp. 101350-101350 [ Pubmed: 39469420 DOI: doi:10.1016/j.omtm.2024.101350 ]
- Adeno-associated virus (Virus from Adeno-associated virus)
- Capsid protein vp1 (58 kDa, Protein from Adeno-associated virus)
Coxsackievirus A9 bound with compound 20 (CL300)
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 8s7j
Q-score: 0.598
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ DOI: doi:10.1021/acs.jmedchem.4c00701 Pubmed: 39292620 ]
- ~{n}-[(4-methoxyphenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (325 Da, Ligand)
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Human coxsackievirus a9 (strain griggs) (8 MDa, Virus from Human coxsackievirus A9 (strain Griggs))
Coxsackievirus A9 bound with compound 14 (CL275)
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9exi
Q-score: 0.584
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ DOI: doi:10.1021/acs.jmedchem.4c00701 Pubmed: 39292620 ]
- Myristic acid (228 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (32 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- 4-[(4-methylpiperazin-1-yl)methyl]-n-[[4-(trifluoromethyl)phenyl]methyl]aniline (363 Da, Ligand)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp2 (27 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
Coxsackievirus A9 bound with compound 16 (CL298)
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 9fa9
Q-score: 0.553
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ DOI: doi:10.1021/acs.jmedchem.4c00701 Pubmed: 39292620 ]
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (32 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- ~{n}-[(2-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (313 Da, Ligand)
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
Coxsackievirus A9 bound with compound 17 (CL301)
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 9fcz
Q-score: 0.573
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ DOI: doi:10.1021/acs.jmedchem.4c00701 Pubmed: 39292620 ]
- Myristic acid (228 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (32 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- ~{n}-[(3-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (313 Da, Ligand)
- Capsid protein vp2 (27 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Human coxsackievirus a9 (strain griggs) (8 MDa, Virus from Human coxsackievirus A9 (strain Griggs))