The hydratase activity of malonate semialdehyde decarboxylase: mechanistic and evolutionary implications

GJ Poelarends, H Serrano, WH Johnson… - Journal of the …, 2004 - ACS Publications
GJ Poelarends, H Serrano, WH Johnson, DW Hoffman, CP Whitman
Journal of the American Chemical Society, 2004ACS Publications
Malonate semialdehyde decarboxylase (MSAD) is a member of the tautomerase
superfamily, a group of structurally homologous proteins that have a characteristic β− α− β-
fold and a catalytic amino-terminal proline. In addition to its physiological decarboxylase
activity, the conversion of malonate semialdehyde to acetaldehyde and carbon dioxide, the
enzyme has now been found to display a promiscuous hydratase activity, converting 2-oxo-3-
pentynoate to acetopyruvate, with ak cat/K m value of 6.0× 102 M-1 s-1. Pro-1 and Arg-75 …
Malonate semialdehyde decarboxylase (MSAD) is a member of the tautomerase superfamily, a group of structurally homologous proteins that have a characteristic β−α−β-fold and a catalytic amino-terminal proline. In addition to its physiological decarboxylase activity, the conversion of malonate semialdehyde to acetaldehyde and carbon dioxide, the enzyme has now been found to display a promiscuous hydratase activity, converting 2-oxo-3-pentynoate to acetopyruvate, with a kcat/Km value of 6.0 × 102 M-1 s-1. Pro-1 and Arg-75 are critical for both activities, and the pKa of Pro-1 was determined to be ∼9.2 by a direct 15N NMR titration. These observations implicate a decarboxylation mechanism in which Pro-1 polarizes the carbonyl oxygen of substrate by hydrogen bonding and/or an electrostatic interaction. Arg-75 may position the carboxylate group into a favorable orientation for decarboxylation. Both the hydratase activity and the pKa value of Pro-1 are shared with trans-3-chloroacrylic acid dehalogenase, another tautomerase superfamily member that precedes MSAD in a bacterial degradation pathway for trans-1,3-dichloropropene. Hence, MSAD and CaaD could have evolved by divergent evolution from a common ancestral protein, retaining the necessary catalytic components for the conjugate addition of water.
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