A draft human pangenome reference
Here the Human Pangenome Reference Consortium presents a first draft of the human
pangenome reference. The pangenome contains 47 phased, diploid assemblies from a cohort of …
pangenome reference. The pangenome contains 47 phased, diploid assemblies from a cohort of …
[HTML][HTML] High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
The 1000 Genomes Project (1kGP) is the largest fully open resource of whole-genome
sequencing (WGS) data consented for public distribution without access or use restrictions. The …
sequencing (WGS) data consented for public distribution without access or use restrictions. The …
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
…, B Raeder, P Hasenfeld, AA Regier, HJ Abel… - Science, 2021 - science.org
INTRODUCTION The characterization of the full spectrum of genetic variation is critical to
understanding human health and disease. Recent technological advances have made it …
understanding human health and disease. Recent technological advances have made it …
Mapping and characterization of structural variation in 17,795 human genomes
A key goal of whole-genome sequencing for studies of human genetics is to interrogate all
forms of variation, including single-nucleotide variants, small insertion or deletion (indel) …
forms of variation, including single-nucleotide variants, small insertion or deletion (indel) …
Genome-wide association studies of metabolites in Finnish men identify disease-relevant loci
Few studies have explored the impact of rare variants (minor allele frequency < 1%) on highly
heritable plasma metabolites identified in metabolomic screens. The Finnish population …
heritable plasma metabolites identified in metabolomic screens. The Finnish population …
[HTML][HTML] Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens
DH Spencer, JK Sehn, HJ Abel, MA Watson… - The Journal of molecular …, 2013 - Elsevier
Next-generation sequencing (NGS) has emerged as a powerful technique for the detection
of genetic variants in the clinical laboratory. NGS can be performed using DNA from FFPE …
of genetic variants in the clinical laboratory. NGS can be performed using DNA from FFPE …
Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches
HJ Abel, EJ Duncavage - Cancer genetics, 2013 - Elsevier
Next generation sequencing (NGS), or massively paralleled sequencing, refers to a collective
group of methods in which numerous sequencing reactions take place simultaneously, …
group of methods in which numerous sequencing reactions take place simultaneously, …
[HTML][HTML] Validation of a next-generation sequencing assay for clinical molecular oncology
…, EJ Duncavage, DH Spencer, HJ Abel… - The Journal of molecular …, 2014 - Elsevier
Currently, oncology testing includes molecular studies and cytogenetic analysis to detect
genetic aberrations of clinical significance. Next-generation sequencing (NGS) allows rapid …
genetic aberrations of clinical significance. Next-generation sequencing (NGS) allows rapid …
Exome sequencing of Finnish isolates enhances rare-variant association power
…, SK Service, AS Havulinna, L Stell, M Pirinen, HJ Abel… - Nature, 2019 - nature.com
Exome-sequencing studies have generally been underpowered to identify deleterious
alleles with a large effect on complex traits as such alleles are mostly rare. Because the …
alleles with a large effect on complex traits as such alleles are mostly rare. Because the …
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
…, R Reddy, E Torstenson, MK Banasiewicz, HJ Abel… - Cell Genomics, 2022 - cell.com
The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL;
https://anvilproject.org) was developed to address a widespread community need for a …
https://anvilproject.org) was developed to address a widespread community need for a …