The leucine-rich repeat structure
The leucine-rich repeat is a widespread structural motif of 20–30 amino acids with a
characteristic repetitive sequence pattern rich in leucines. Leucine-rich repeat domains are …
characteristic repetitive sequence pattern rich in leucines. Leucine-rich repeat domains are …
The interface of protein structure, protein biophysics, and molecular evolution
Abstract The interface of protein structural biology, protein biophysics, molecular evolution,
and molecular population genetics forms the foundations for a mechanistic understanding of …
and molecular population genetics forms the foundations for a mechanistic understanding of …
An integrated view of molecular coevolution in protein–protein interactions
SC Lovell, DL Robertson - Molecular biology and evolution, 2010 - academic.oup.com
Protein–protein interactions effectively mediate molecular function. They are the result of
specific interactions between protein interfaces and are maintained by the action of …
specific interactions between protein interfaces and are maintained by the action of …
Structure validation by Cα geometry: ϕ, ψ and Cβ deviation
Geometrical validation around the C is described, with a new C measure and updated
Ramachandran plot. Deviation of the observed C atom from ideal position provides a single …
Ramachandran plot. Deviation of the observed C atom from ideal position provides a single …
MolProbity: more and better reference data for improved all‐atom structure validation
CJ Williams, JJ Headd, NW Moriarty… - Protein …, 2018 - Wiley Online Library
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …
are provided at the MolProbity website, emphasizing changes and additions since the …
Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation
JM Word, SC Lovell, JS Richardson… - Journal of molecular …, 1999 - Elsevier
Small-probe contact dot surface analysis, with all explicit hydrogen atoms added and their
van der Waals contacts included, was used to choose between the two possible orientations …
van der Waals contacts included, was used to choose between the two possible orientations …
The penultimate rotamer library
SC Lovell, JM Word, JS Richardson… - Proteins: Structure …, 2000 - Wiley Online Library
All published rotamer libraries contain some rotamers that exhibit impossible internal atomic
overlaps if built in ideal geometry with all hydrogen atoms. Removal of uncertain residues …
overlaps if built in ideal geometry with all hydrogen atoms. Removal of uncertain residues …
Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature
GI Rice, PR Kasher, GMA Forte, NM Mannion… - Nature …, 2012 - nature.com
Adenosine deaminases acting on RNA (ADARs) catalyze the hydrolytic deamination of
adenosine to inosine in double-stranded RNA (dsRNA) and thereby potentially alter the …
adenosine to inosine in double-stranded RNA (dsRNA) and thereby potentially alter the …
Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms
The technique of small-probe contact dot surfaces is described as a method for calculating
and displaying the detailed atomic contacts inside or between molecules. It allows one both …
and displaying the detailed atomic contacts inside or between molecules. It allows one both …
Mutations in CTC1, encoding conserved telomere maintenance component 1, cause Coats plus
BH Anderson, PR Kasher, J Mayer, M Szynkiewicz… - Nature …, 2012 - nature.com
Coats plus is a highly pleiotropic disorder particularly affecting the eye, brain, bone and
gastrointestinal tract. Here, we show that Coats plus results from mutations in CTC1 …
gastrointestinal tract. Here, we show that Coats plus results from mutations in CTC1 …