User profiles for "author:Deneux T"

Thomas Deneux

CNRS, UNIC
Verified email at unic.cnrs-gif.fr
Cited by 1141

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo

T Deneux, A Kaszas, G Szalay, G Katona… - Nature …, 2016 - nature.com
Extracting neuronal spiking activity from large-scale two-photon recordings remains
challenging, especially in mammals in vivo, where large noises often contaminate the …

Context-dependent signaling of coincident auditory and visual events in primary visual cortex

T Deneux, ER Harrell, A Kempf, S Ceballo, A Filipchuk… - Elife, 2019 - elifesciences.org
Detecting rapid, coincident changes across sensory modalities is essential for recognition of
sudden threats or events. Using two-photon calcium imaging in identified cell types in …

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

P Berens, J Freeman, T Deneux… - PLoS computational …, 2018 - journals.plos.org
In recent years, two-photon calcium imaging has become a standard tool to probe the
function of neural circuits and to study computations in neuronal populations. However, the …

Temporal asymmetries in auditory coding and perception reflect multi-layered nonlinearities

T Deneux, A Kempf, A Daret, E Ponsot… - Nature …, 2016 - nature.com
Sound recognition relies not only on spectral cues, but also on temporal cues, as
demonstrated by the profound impact of time reversals on perception of common sounds. To …

Odor identity coding by distributed ensembles of neurons in the mouse olfactory cortex

B Roland, T Deneux, KM Franks, B Bathellier… - Elife, 2017 - elifesciences.org
Olfactory perception and behaviors critically depend on the ability to identify an odor across
a wide range of concentrations. Here, we use calcium imaging to determine how odor …

How do spontaneous and sensory-evoked activities interact?

I Ferezou, T Deneux - Neurophotonics, 2017 - spiedigitallibrary.org
Twenty years ago, the seminal work of Grinvald et al. revolutionized the view cast on
spontaneous cortical activity by showing how, instead of being a mere measure of noise, it …

Using nonlinear models in fMRI data analysis: model selection and activation detection

T Deneux, O Faugeras - NeuroImage, 2006 - Elsevier
There is an increasing interest in using physiologically plausible models in fMRI analysis.
These models do raise new mathematical problems in terms of parameter estimation and …

Variational, geometric, and statistical methods for modeling brain anatomy and function

O Faugeras, G Adde, G Charpiat, C Chefd'Hotel… - NeuroImage, 2004 - Elsevier
We survey the recent activities of the Odyssée Laboratory in the area of the application of
mathematics to the design of models for studying brain anatomy and function. We start with …

Network dynamics underlying OFF responses in the auditory cortex

G Bondanelli, T Deneux, B Bathellier, S Ostojic - Elife, 2021 - elifesciences.org
Across sensory systems, complex spatio-temporal patterns of neural activity arise following
the onset (ON) and offset (OFF) of stimuli. While ON responses have been widely studied …

Milliseconds of sensory input abruptly modulate the dynamics of cortical states for seconds

T Deneux, A Grinvald - Cerebral Cortex, 2017 - academic.oup.com
Spontaneous internal activity plays a major role in higher brain functions. The question of
how it modulates sensory evoked activity and behavior has been explored in anesthetized …