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nCal: an R package for non-linear calibration

Bioinformatics. 2013 Oct 15;29(20):2653-4. doi: 10.1093/bioinformatics/btt456. Epub 2013 Aug 6.

Abstract

Summary: Non-linear calibration is a widely used method for quantifying biomarkers wherein concentration-response curves estimated using samples of known concentrations are used to predict the biomarker concentrations in the samples of interest. The R package nCal fills an important gap in the open source, stand-alone software for performing non-linear calibration. For curve fitting, nCal provides a new implementation of a robust, Bayesian hierarchical five-parameter logistic model. nCal supports a simple graphical user interface that can be used by laboratory scientists, and contains functionality for importing data from the multiplex bead array assay instrumentation.

Availability: The R package 'nCal' is available from http://cran.r-project.org/web/packages/nCal/ under GPL-2 or later.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bayes Theorem
  • Calibration
  • Nonlinear Dynamics*
  • Programming Languages
  • Software