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Page 1
Blood-based tumor mutational burden as a predictor of clinical benefit in non-small-cell lung cancer patients treated with atezolizumab.
Gandara DR, Paul SM, Kowanetz M, Schleifman E, Zou W, Li Y, Rittmeyer A, Fehrenbacher L, Otto G, Malboeuf C, Lieber DS, Lipson D, Silterra J, Amler L, Riehl T, Cummings CA, Hegde PS, Sandler A, Ballinger M, Fabrizio D, Mok T, Shames DS. Gandara DR, et al. Among authors: silterra j. Nat Med. 2018 Sep;24(9):1441-1448. doi: 10.1038/s41591-018-0134-3. Epub 2018 Aug 6. Nat Med. 2018. PMID: 30082870
SciPy 1.0: fundamental algorithms for scientific computing in Python.
Virtanen P, Gommers R, Oliphant TE, Haberland M, Reddy T, Cournapeau D, Burovski E, Peterson P, Weckesser W, Bright J, van der Walt SJ, Brett M, Wilson J, Millman KJ, Mayorov N, Nelson ARJ, Jones E, Kern R, Larson E, Carey CJ, Polat İ, Feng Y, Moore EW, VanderPlas J, Laxalde D, Perktold J, Cimrman R, Henriksen I, Quintero EA, Harris CR, Archibald AM, Ribeiro AH, Pedregosa F, van Mulbregt P; SciPy 1.0 Contributors. Virtanen P, et al. Nat Methods. 2020 Mar;17(3):261-272. doi: 10.1038/s41592-019-0686-2. Epub 2020 Feb 3. Nat Methods. 2020. PMID: 32015543 Free PMC article. Review.
Quantitative visualization of alternative exon expression from RNA-seq data.
Katz Y, Wang ET, Silterra J, Schwartz S, Wong B, Thorvaldsdóttir H, Robinson JT, Mesirov JP, Airoldi EM, Burge CB. Katz Y, et al. Among authors: silterra j. Bioinformatics. 2015 Jul 15;31(14):2400-2. doi: 10.1093/bioinformatics/btv034. Epub 2015 Jan 22. Bioinformatics. 2015. PMID: 25617416 Free PMC article.
Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups.
Archer TC, Ehrenberger T, Mundt F, Gold MP, Krug K, Mah CK, Mahoney EL, Daniel CJ, LeNail A, Ramamoorthy D, Mertins P, Mani DR, Zhang H, Gillette MA, Clauser K, Noble M, Tang LC, Pierre-François J, Silterra J, Jensen J, Tamayo P, Korshunov A, Pfister SM, Kool M, Northcott PA, Sears RC, Lipton JO, Carr SA, Mesirov JP, Pomeroy SL, Fraenkel E. Archer TC, et al. Among authors: silterra j. Cancer Cell. 2018 Sep 10;34(3):396-410.e8. doi: 10.1016/j.ccell.2018.08.004. Cancer Cell. 2018. PMID: 30205044 Free PMC article.
Boltz-1 Democratizing Biomolecular Interaction Modeling.
Wohlwend J, Corso G, Passaro S, Reveiz M, Leidal K, Swiderski W, Portnoi T, Chinn I, Silterra J, Jaakkola T, Barzilay R. Wohlwend J, et al. Among authors: silterra j. bioRxiv [Preprint]. 2024 Nov 20:2024.11.19.624167. doi: 10.1101/2024.11.19.624167. bioRxiv. 2024. PMID: 39605745 Free PMC article. Preprint.
A genomic and evolutionary approach reveals non-genetic drug resistance in malaria.
Herman JD, Rice DP, Ribacke U, Silterra J, Deik AA, Moss EL, Broadbent KM, Neafsey DE, Desai MM, Clish CB, Mazitschek R, Wirth DF. Herman JD, et al. Among authors: silterra j. Genome Biol. 2014;15(11):511. doi: 10.1186/PREACCEPT-1067113631444973. Genome Biol. 2014. PMID: 25395010 Free PMC article.
Responses to Bacteria, Virus, and Malaria Distinguish the Etiology of Pediatric Clinical Pneumonia.
Valim C, Ahmad R, Lanaspa M, Tan Y, Acácio S, Gillette MA, Almendinger KD, Milner DA Jr, Madrid L, Pellé K, Harezlak J, Silterra J, Alonso PL, Carr SA, Mesirov JP, Wirth DF, Wiegand RC, Bassat Q. Valim C, et al. Among authors: silterra j. Am J Respir Crit Care Med. 2016 Feb 15;193(4):448-59. doi: 10.1164/rccm.201506-1100OC. Am J Respir Crit Care Med. 2016. PMID: 26469764 Free PMC article.
Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python.
Virtanen P, Gommers R, Oliphant TE, Haberland M, Reddy T, Cournapeau D, Burovski E, Peterson P, Weckesser W, Bright J, van der Walt SJ, Brett M, Wilson J, Millman KJ, Mayorov N, Nelson ARJ, Jones E, Kern R, Larson E, Carey CJ, Polat İ, Feng Y, Moore EW, VanderPlas J, Laxalde D, Perktold J, Cimrman R, Henriksen I, Quintero EA, Harris CR, Archibald AM, Ribeiro AH, Pedregosa F, van Mulbregt P; SciPy 1.0 Contributors. Virtanen P, et al. Nat Methods. 2020 Mar;17(3):352. doi: 10.1038/s41592-020-0772-5. Nat Methods. 2020. PMID: 32094914 Free PMC article.