Lu XJ - Search Results

1

Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures.

Li S, Olson WK, Lu XJ. Li S, et al. Among authors: lu xj. Nucleic Acids Res. 2019 Jul 2;47(W1):W26-W34. doi: 10.1093/nar/gkz394. Nucleic Acids Res. 2019. PMID: 31114927 Free PMC article.

2

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Lu XJ, Olson WK. Lu XJ, et al. Nucleic Acids Res. 2003 Sep 1;31(17):5108-21. doi: 10.1093/nar/gkg680. Nucleic Acids Res. 2003. PMID: 12930962 Free PMC article.

3

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures.

Lu XJ, Olson WK. Lu XJ, et al. Nat Protoc. 2008;3(7):1213-27. doi: 10.1038/nprot.2008.104. Nat Protoc. 2008. PMID: 18600227 Free PMC article.

4

New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures.

Olson WK, Esguerra M, Xin Y, Lu XJ. Olson WK, et al. Among authors: lu xj. Methods. 2009 Mar;47(3):177-86. doi: 10.1016/j.ymeth.2008.12.003. Epub 2009 Jan 14. Methods. 2009. PMID: 19150407 Free PMC article. Review.

5

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.

Zheng G, Lu XJ, Olson WK. Zheng G, et al. Among authors: lu xj. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W240-6. doi: 10.1093/nar/gkp358. Epub 2009 May 27. Nucleic Acids Res. 2009. PMID: 19474339 Free PMC article.

6

3DNALandscapes: a database for exploring the conformational features of DNA.

Zheng G, Colasanti AV, Lu XJ, Olson WK. Zheng G, et al. Among authors: lu xj. Nucleic Acids Res. 2010 Jan;38(Database issue):D267-74. doi: 10.1093/nar/gkp959. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906722 Free PMC article.

7

Analyzing and building nucleic acid structures with 3DNA.

Colasanti AV, Lu XJ, Olson WK. Colasanti AV, et al. Among authors: lu xj. J Vis Exp. 2013 Apr 26;(74):e4401. doi: 10.3791/4401. J Vis Exp. 2013. PMID: 23644419 Free PMC article.

8

DSSR: an integrated software tool for dissecting the spatial structure of RNA.

Lu XJ, Bussemaker HJ, Olson WK. Lu XJ, et al. Nucleic Acids Res. 2015 Dec 2;43(21):e142. doi: 10.1093/nar/gkv716. Epub 2015 Jul 15. Nucleic Acids Res. 2015. PMID: 26184874 Free PMC article.

9

Effects of Noncanonical Base Pairing on RNA Folding: Structural Context and Spatial Arrangements of G·A Pairs.

Olson WK, Li S, Kaukonen T, Colasanti AV, Xin Y, Lu XJ. Olson WK, et al. Among authors: lu xj. Biochemistry. 2019 May 21;58(20):2474-2487. doi: 10.1021/acs.biochem.9b00122. Epub 2019 May 8. Biochemistry. 2019. PMID: 31008589 Free PMC article.

10

Resolving the discrepancies among nucleic acid conformational analyses.

Lu XJ, Olson WK. Lu XJ, et al. J Mol Biol. 1999 Jan 29;285(4):1563-75. doi: 10.1006/jmbi.1998.2390. J Mol Biol. 1999. PMID: 9917397

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